Rmu_sc0006825.1_g000001
ERF Family

Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. TrmE GTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006825.1
OG0012258
Physical Location & Seq
Reverse (-)
1 .. 2840
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006825.1_g000001.1.cds

Sequence Viewer

Length: 1159 bp
atggcctcgctgctctcacctctccgctttcgccattttctttacacgaggcctaaactaaaactgaaacccccttatctaatctctgccgcctctttcaaacccctcctcaaactccgccctcgctcccctccctatttacactcctgccactgctccttcaccgcctcttccccactcgcagactccggctacaaaacccagacgccgcttctcggcagagacgagcgagctgccgtagtgagtgggtcccagccgcagccggagagcgctagcacaatcgcggccattgtgacgtcagttgggggcccacccggcgcggttgggatcgtgcggctgtccggcccgtccgcggtggccgtcgtcggccgcgtgttccgtcagagcaagaaaaagagaaagagcaagagctctggtgctgagccatggcgacccactagtcatgtggtcgaatacggcgtcgttttggaccccaacggtaatgtcgtcgacgaggttttagctgtgccaatgttggccccaagatcatatacacgtgaagatgtggtggagcttcaatgccatgggactcaagtgtgtctgaaccgggttctcagagcttgtttagaagctggagcaaggcttgcggaaccaggggagttcactctgcgtgcctttctcaatggccgcttggacctgacccaagctgaaaatgttgataaactcatttcggccaagtctgtggctgcagcagatgcagcactagcggcaattcagggtggcttttcttccatggtaaaatccgtgagatttcagtgcattgagttgcttactgaaattgaagcccggttagattttgatgatgagatgccgccgcttgataccaatgaagttgtgaataaaatacattccatgtcacaagatgttgagagtgctctagagacggccaattatgaccaacttctgcaatctggattacagatagcaattctgggccgtccaaatgttgggaaatcaagcctcctcaatgcatggagcaaaactgagagagctatagttacagaagttgctgggaccactcgggatgtggttgaagccagtattacagttaatggtattcctgtaacccttcttgatacagcaggcatcagggaaaccactgacatagtggagaaaattg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1 MnmE_helical TrmE_N

Protein Analysis

386

Amino Acids

41.53

Weight (kDa)

8.46

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78010
fragaria_vesca FvH4_5g38010 FvH4_5g38010
malus_domestica MD08G1177300.v1.1 MD15G1355000.v1.1
prunus_persica Prupe.1G511900_v2.0.a1
pyrus_communis pycom08g15220
rosa_chinensis RchiOBHm_Chr7g0239951
rosa_laevigata RLG00000000715
rosa_multiflora Rmu_sc0000540.1_g000022 Rmu_sc0006825.1_g000001 Rmu_sc0035965.1_g000001
rosa_roxburghii Rroxscaffold_3G00220600
rosa_rugosa Rorug07G0331400
rosa_samantha Rh7AG485100 Rh7BG458100 Rh7CG502400 Rh7DG470700
rosa_wichuraiana Rw7G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 438
AatII GACGTC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 986
AccI GTMKAC 1 cut(s) 489
AccII CGCG 4 cut(s) 284, 320, 353, 372
AclWI GGATC 1 cut(s) 335
AcoI YGGCCR 6 cut(s) 285, 357, 367, 664, 711, 924
AcvI CACGTG 1 cut(s) 536
AcyI GRCGYC 3 cut(s) 206, 296, 459
AfeI AGCGCT 1 cut(s) 271
AfiI CCNNNNNNNGG 3 cut(s) 215, 352, 986
AflIII ACRYGT 1 cut(s) 533
AgsI TTSAA 4 cut(s) 100, 557, 821, 1073
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 1 cut(s) 631
AluBI AGCT 8 cut(s) 233, 411, 503, 553, 599, 611, 686, 1031
AluI AGCT 8 cut(s) 233, 411, 503, 553, 599, 611, 686, 1031
Alw21I GWGCWC 2 cut(s) 413, 916
Alw26I GTCTC 2 cut(s) 216, 914
AlwI GGATC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 1059
Aor51HI AGCGCT 1 cut(s) 271
ApaI GGGCCC 1 cut(s) 311
ApeKI GCWGC 6 cut(s) 10, 233, 259, 725, 728, 737
ArsI GACNNNNNNTTYG 2 cut(s) 444, 476
AspLEI GCGC 2 cut(s) 272, 320
AspS9I GGNCC 9 cut(s) 249, 307, 308, 344, 469, 517, 673, 973, 1053
AsuC2I CCSGG 3 cut(s) 315, 587, 826
AsuHPI GGTGA 2 cut(s) 9, 154
AsuNHI GCTAGC 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 1059
AvaII GGWCC 4 cut(s) 249, 469, 673, 1053
BaeGI GKGCMC 1 cut(s) 311
BanII GRGCYC 2 cut(s) 311, 413
BauI CACGAG 1 cut(s) 46
BbrPI CACGTG 1 cut(s) 536
Bbv12I GWGCWC 2 cut(s) 413, 916
BbvI GCAGC 5 cut(s) 220, 271, 712, 740, 749
BceAI ACGGC 5 cut(s) 221, 344, 472, 939, 960
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 633
BcnI CCSGG 3 cut(s) 315, 587, 826
BcoDI GTCTC 2 cut(s) 216, 914
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 4 cut(s) 273, 438, 743, 917
BfmI CTRYAG 2 cut(s) 726, 1032
BfoI RGCGCY 1 cut(s) 273
BglI GCCNNNNNGGC 1 cut(s) 315
BlpI GCTNAGC 1 cut(s) 420
Bme1390I CCNGG 4 cut(s) 315, 587, 633, 826
Bme18I GGWCC 4 cut(s) 249, 469, 673, 1053
BmeT110I CYCGRG 1 cut(s) 1059
BmgT120I GGNCC 9 cut(s) 249, 307, 308, 344, 469, 517, 673, 973, 1053
BmiI GGNNCC 8 cut(s) 250, 251, 308, 309, 471, 519, 630, 1054
BmrFI CCNGG 4 cut(s) 315, 587, 633, 826
BmsI GCATC 3 cut(s) 724, 837, 1134
BmtI GCTAGC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 633
Bpu1102I GCTNAGC 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 555
BpuMI CCSGG 3 cut(s) 315, 587, 826
BsaAI YACGTR 1 cut(s) 536
BsaHI GRCGYC 3 cut(s) 206, 296, 459
BsaJI CCNNGG 5 cut(s) 351, 425, 562, 632, 771
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 352, 986
Bse1I ACTGG 1 cut(s) 1077
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 5 cut(s) 351, 425, 562, 632, 771
BseGI GGATG 1 cut(s) 1069
BseLI CCNNNNNNNGG 3 cut(s) 215, 352, 986
BseMII CTCAG 3 cut(s) 411, 607, 1014
BseNI ACTGG 1 cut(s) 1077
BseRI GAGGAG 2 cut(s) 98, 992
BseSI GKGCMC 1 cut(s) 311
BseX3I CGGCCG 1 cut(s) 367
BseXI GCAGC 5 cut(s) 220, 271, 712, 740, 749
BseYI CCCAGC 2 cut(s) 252, 1049
Bsh1236I CGCG 4 cut(s) 284, 320, 353, 372
Bsh1285I CGRYCG 1 cut(s) 370
BsiEI CGRYCG 1 cut(s) 370
BsiHKAI GWGCWC 2 cut(s) 413, 916
BsiHKCI CYCGRG 1 cut(s) 1059
BsiSI CCGG 6 cut(s) 189, 263, 315, 342, 586, 826
BslFI GGGAC 3 cut(s) 235, 580, 1066
BslI CCNNNNNNNGG 3 cut(s) 215, 352, 986
BsmAI GTCTC 2 cut(s) 216, 914
BsmBI CGTCTC 2 cut(s) 216, 914
BsmFI GGGAC 3 cut(s) 235, 580, 1066
BsoBI CYCGRG 1 cut(s) 1059
Bsp120I GGGCCC 1 cut(s) 307
Bsp1286I GDGCHC 3 cut(s) 311, 413, 916
Bsp143I GATC 2 cut(s) 327, 524
Bsp1720I GCTNAGC 1 cut(s) 420
Bsp19I CCATGG 3 cut(s) 425, 562, 771
BspCNI CTCAG 3 cut(s) 412, 606, 1015
BspFNI CGCG 4 cut(s) 284, 320, 353, 372
BspLI GGNNCC 8 cut(s) 250, 251, 308, 309, 471, 519, 630, 1054
BspMAI CTGCAG 1 cut(s) 730
BspOI GCTAGC 1 cut(s) 276
BspPI GGATC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 1077
BssECI CCNNGG 5 cut(s) 351, 425, 562, 632, 771
BssMI GATC 2 cut(s) 327, 524
BssNI GRCGYC 3 cut(s) 206, 296, 459
BssSI CACGAG 1 cut(s) 46
BssT1I CCWWGG 3 cut(s) 425, 562, 771
Bst2BI CACGAG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 2 cut(s) 479, 1087
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 3 cut(s) 206, 296, 459
BstAPI GCANNNNNTGC 2 cut(s) 623, 734
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 5 cut(s) 231, 274, 624, 651, 1123
BstDEI CTNAG 3 cut(s) 420, 593, 1023
BstDSI CCRYGG 4 cut(s) 351, 425, 562, 771
BstF5I GGATG 1 cut(s) 1069
BstFNI CGCG 4 cut(s) 284, 320, 353, 372
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 2 cut(s) 272, 320
BstKTI GATC 2 cut(s) 330, 527
BstMAI GTCTC 2 cut(s) 216, 914
BstMBI GATC 2 cut(s) 327, 524
BstMCI CGRYCG 1 cut(s) 370
BstMWI GCNNNNNNNGC 6 cut(s) 315, 623, 734, 737, 743, 746
BstNI CCWGG 1 cut(s) 633
BstSCI CCNGG 4 cut(s) 313, 585, 631, 824
BstSFI CTRYAG 2 cut(s) 726, 1032
BstSLI GKGCMC 1 cut(s) 311
BstUI CGCG 4 cut(s) 284, 320, 353, 372
BstV1I GCAGC 5 cut(s) 220, 271, 712, 740, 749
BstXI CCANNNNNNTGG 1 cut(s) 721
BstZI CGGCCG 1 cut(s) 367
BtgI CCRYGG 4 cut(s) 351, 425, 562, 771
BtsCI GGATG 1 cut(s) 1069
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 3 cut(s) 151, 800, 1137
Cac8I GCNNGC 5 cut(s) 231, 274, 624, 651, 1123
CfoI GCGC 2 cut(s) 272, 320
Cfr13I GGNCC 9 cut(s) 249, 307, 308, 344, 469, 517, 673, 973, 1053
Cfr42I CCGCGG 1 cut(s) 354
CseI GACGC 2 cut(s) 214, 448
CviAII CATG 6 cut(s) 426, 443, 563, 772, 892, 1011
DdeI CTNAG 3 cut(s) 420, 593, 1023
DpnI GATC 2 cut(s) 329, 526
DpnII GATC 2 cut(s) 327, 524
DrdI GACNNNNNNGTC 1 cut(s) 438
DseDI GACNNNNNNGTC 1 cut(s) 438
EaeI YGGCCR 6 cut(s) 285, 357, 367, 664, 711, 924
EagI CGGCCG 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 411
EclXI CGGCCG 1 cut(s) 367
Eco130I CCWWGG 3 cut(s) 425, 562, 771
Eco147I AGGCCT 1 cut(s) 52
Eco24I GRGCYC 2 cut(s) 311, 413
Eco47I GGWCC 4 cut(s) 249, 469, 673, 1053
Eco47III AGCGCT 1 cut(s) 271
Eco52I CGGCCG 1 cut(s) 367
Eco53kI GAGCTC 1 cut(s) 411
Eco72I CACGTG 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 1059
EcoICRI GAGCTC 1 cut(s) 411
EcoO109I RGGNCCY 2 cut(s) 249, 307
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 3 cut(s) 425, 562, 771
EcoT22I ATGCAT 1 cut(s) 1012
EcoT38I GRGCYC 2 cut(s) 311, 413
ErhI CCWWGG 3 cut(s) 425, 562, 771
Esp3I CGTCTC 2 cut(s) 216, 914
FaeI CATG 6 cut(s) 429, 446, 566, 775, 895, 1014
FaqI GGGAC 3 cut(s) 235, 580, 1066
FatI CATG 6 cut(s) 425, 442, 562, 771, 891, 1010
FblI GTMKAC 1 cut(s) 489
FokI GGATG 1 cut(s) 1076
FriOI GRGCYC 2 cut(s) 311, 413
FspBI CTAG 4 cut(s) 273, 438, 743, 917
GlaI GCGC 2 cut(s) 271, 319
GsaI CCCAGC 2 cut(s) 256, 1053
GsuI CTGGAG 1 cut(s) 633
HaeII RGCGCY 1 cut(s) 273
HapII CCGG 6 cut(s) 189, 263, 315, 342, 586, 826
HgaI GACGC 2 cut(s) 214, 448
HhaI GCGC 2 cut(s) 272, 320
Hin1I GRCGYC 3 cut(s) 206, 296, 459
Hin1II CATG 6 cut(s) 429, 446, 566, 775, 895, 1014
Hin6I GCGC 2 cut(s) 270, 318
HinP1I GCGC 2 cut(s) 270, 318
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 2 cut(s) 185, 568
HpaII CCGG 6 cut(s) 189, 263, 315, 342, 586, 826
HphI GGTGA 2 cut(s) 9, 154
Hpy166II GTNNAC 2 cut(s) 490, 642
Hpy188I TCNGA 3 cut(s) 384, 582, 596
Hpy188III TCNNGA 4 cut(s) 917, 951, 1061, 1112
Hpy8I GTNNAC 2 cut(s) 490, 642
Hpy99I CGWCG 5 cut(s) 365, 368, 464, 491, 494
HpyAV CCTTC 2 cut(s) 169, 1118
HpyCH4III ACNGT 2 cut(s) 479, 1087
HpyCH4IV ACGT 2 cut(s) 296, 535
HpyCH4V TGCA 5 cut(s) 728, 737, 798, 946, 1010
HpyF10VI GCNNNNNNNGC 6 cut(s) 315, 623, 734, 737, 743, 746
HpyF3I CTNAG 3 cut(s) 420, 593, 1023
HpySE526I ACGT 2 cut(s) 296, 535
Hsp92I GRCGYC 3 cut(s) 206, 296, 459
Hsp92II CATG 6 cut(s) 429, 446, 566, 775, 895, 1014
HspAI GCGC 2 cut(s) 270, 318
KflI GGGWCCC 1 cut(s) 249
KspI CCGCGG 1 cut(s) 354
Kzo9I GATC 2 cut(s) 327, 524
LmnI GCTCC 5 cut(s) 131, 161, 550, 614, 1014
Lsp1109I GCAGC 5 cut(s) 220, 271, 712, 740, 749
LweI GCATC 3 cut(s) 724, 837, 1134
MaeI CTAG 4 cut(s) 273, 438, 743, 917
MaeII ACGT 2 cut(s) 296, 535
MaeIII GTNAC 4 cut(s) 292, 894, 1036, 1102
MalI GATC 2 cut(s) 329, 526
MboI GATC 2 cut(s) 327, 524
MboII GAAGA 3 cut(s) 162, 551, 759
MhlI GDGCHC 3 cut(s) 311, 413, 916
MluCI AATT 5 cut(s) 750, 816, 928, 966, 1155
MlyI GAGTC 2 cut(s) 179, 562
Mph1103I ATGCAT 1 cut(s) 1012
MseI TTAA 1 cut(s) 1089
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 6 cut(s) 189, 263, 315, 342, 586, 826
MspR9I CCNGG 4 cut(s) 315, 587, 633, 826
MvaI CCWGG 1 cut(s) 633
MvnI CGCG 4 cut(s) 284, 320, 353, 372
MwoI GCNNNNNNNGC 6 cut(s) 315, 623, 734, 737, 743, 746
NciI CCSGG 3 cut(s) 315, 587, 826
NcoI CCATGG 3 cut(s) 425, 562, 771
NdeII GATC 2 cut(s) 327, 524
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 6 cut(s) 429, 446, 566, 775, 895, 1014
NlaIV GGNNCC 8 cut(s) 250, 251, 308, 309, 471, 519, 630, 1054
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 2 cut(s) 292, 894
NsiI ATGCAT 1 cut(s) 1012
PceI AGGCCT 1 cut(s) 52
PcsI WCGNNNNNNNCGW 4 cut(s) 222, 369, 456, 483
PflMI CCANNNNNTGG 1 cut(s) 986
PleI GAGTC 2 cut(s) 179, 562
PmaCI CACGTG 1 cut(s) 536
PmlI CACGTG 1 cut(s) 536
PpsI GAGTC 2 cut(s) 179, 562
Ppu21I YACGTR 1 cut(s) 536
PpuMI RGGWCCY 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 631
PspCI CACGTG 1 cut(s) 536
PspFI CCCAGC 2 cut(s) 252, 1049
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 8 cut(s) 250, 251, 308, 309, 471, 519, 630, 1054
PspOMI GGGCCC 1 cut(s) 307
PspPI GGNCC 9 cut(s) 249, 307, 308, 344, 469, 517, 673, 973, 1053
PspPPI RGGWCCY 1 cut(s) 249
PstI CTGCAG 1 cut(s) 730
SacI GAGCTC 1 cut(s) 413
SacII CCGCGG 1 cut(s) 354
SalI GTCGAC 1 cut(s) 488
SaqAI TTAA 1 cut(s) 1089
Sau3AI GATC 2 cut(s) 327, 524
Sau96I GGNCC 9 cut(s) 249, 307, 308, 344, 469, 517, 673, 973, 1053
SchI GAGTC 2 cut(s) 179, 562
ScrFI CCNGG 4 cut(s) 315, 587, 633, 826
SduI GDGCHC 3 cut(s) 311, 413, 916
SfaNI GCATC 3 cut(s) 724, 837, 1134
SfcI CTRYAG 2 cut(s) 726, 1032
Sfr303I CCGCGG 1 cut(s) 354
SgrBI CCGCGG 1 cut(s) 354
SgrDI CGTCGACG 1 cut(s) 488
SinI GGWCC 4 cut(s) 249, 469, 673, 1053
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 5 cut(s) 750, 816, 928, 966, 1155
SseBI AGGCCT 1 cut(s) 52
SspMI CTAG 4 cut(s) 273, 438, 743, 917
SstI GAGCTC 1 cut(s) 413
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 4 cut(s) 313, 585, 631, 824
StyI CCWWGG 3 cut(s) 425, 562, 771
TaaI ACNGT 2 cut(s) 479, 1087
TaiI ACGT 2 cut(s) 299, 538
TaqI TCGA 2 cut(s) 450, 489
TasI AATT 5 cut(s) 750, 816, 928, 966, 1155
Tru1I TTAA 1 cut(s) 1089
Tru9I TTAA 1 cut(s) 1089
TscAI CASTG 3 cut(s) 158, 800, 1144
TseFI GTSAC 2 cut(s) 292, 894
TseI GCWGC 6 cut(s) 10, 233, 259, 725, 728, 737
Tsp45I GTSAC 2 cut(s) 292, 894
TspDTI ATGAA 1 cut(s) 882
TspGWI ACGGA 2 cut(s) 368, 772
TspRI CASTG 3 cut(s) 158, 800, 1144
Van91I CCANNNNNTGG 1 cut(s) 986
VpaK11BI GGWCC 4 cut(s) 249, 469, 673, 1053
XbaI TCTAGA 1 cut(s) 916
XcmI CCANNNNNNNNNTGG 3 cut(s) 442, 1063, 1144
XmiI GTMKAC 1 cut(s) 489
XspI CTAG 4 cut(s) 273, 438, 743, 917
ZraI GACGTC 1 cut(s) 297
Zsp2I ATGCAT 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.