Rmu_sc0035965.1_g000001
ERF Family

Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. TrmE GTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035965.1
OG0012258
Physical Location & Seq
Forward (+)
1 .. 720
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035965.1_g000001.1.cds

Sequence Viewer

Length: 554 bp
tcaaactccgccctcgctcccctccctatttacactcctgccactgctccttcaccgcctcttccccactcgcagactccgactacaaaacccagacgccgcttctcggcagagacgagcgagctgccgtagggagtgggtcccagccgcagccggagggcgcgagcacaatcgcggccattgtgacgtcagttgggggcccacccggcgcggttgggatcgtgcggctgtccggcccgtccgcggtggccgtcgtcggccgcgtgttccgtccgagcaagaaaaggagaaagagcaagagctctggtgctgagccatggcgacccactagtcatgtaatcgaatacggcgtcgttttggaccccaacggcaatgtcgtcgacgaggttttagctgtgccaatgttggccccaagatcatatacacgtgaagatgtggtggagcttcaatgccatgggactcaagtgtgtctgaaccgggttctaagagcttgtttagaagctggagcaaggcttgcggaaccaggtgacttcatttattgctcgcacatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1 MnmE_helical TrmE_N

Protein Analysis

183

Amino Acids

19.44

Weight (kDa)

9.0

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78010
fragaria_vesca FvH4_5g38010 FvH4_5g38010
malus_domestica MD08G1177300.v1.1 MD15G1355000.v1.1
prunus_persica Prupe.1G511900_v2.0.a1
pyrus_communis pycom08g15220
rosa_chinensis RchiOBHm_Chr7g0239951
rosa_laevigata RLG00000000715
rosa_multiflora Rmu_sc0000540.1_g000022 Rmu_sc0006825.1_g000001 Rmu_sc0035965.1_g000001
rosa_roxburghii Rroxscaffold_3G00220600
rosa_rugosa Rorug07G0331400
rosa_samantha Rh7AG485100 Rh7BG458100 Rh7CG502400 Rh7DG470700
rosa_wichuraiana Rw7G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AatII GACGTC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 380
AccII CGCG 5 cut(s) 163, 175, 211, 244, 263
AclWI GGATC 1 cut(s) 226
AcoI YGGCCR 3 cut(s) 176, 248, 258
AcvI CACGTG 1 cut(s) 427
AcyI GRCGYC 3 cut(s) 97, 187, 350
AfiI CCNNNNNNNGG 2 cut(s) 106, 243
AflIII ACRYGT 1 cut(s) 424
AgsI TTSAA 1 cut(s) 448
AhlI ACTAGT 1 cut(s) 328
AjnI CCWGG 1 cut(s) 522
AluBI AGCT 6 cut(s) 124, 302, 394, 444, 490, 502
AluI AGCT 6 cut(s) 124, 302, 394, 444, 490, 502
Alw21I GWGCWC 2 cut(s) 169, 304
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 226
AoxI GGCC 6 cut(s) 176, 198, 234, 248, 258, 407
ApaI GGGCCC 1 cut(s) 202
ApeKI GCWGC 2 cut(s) 124, 150
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspLEI GCGC 2 cut(s) 163, 211
AspS9I GGNCC 6 cut(s) 140, 198, 199, 235, 360, 408
AsuC2I CCSGG 2 cut(s) 206, 478
AsuHPI GGTGA 2 cut(s) 45, 538
AvaII GGWCC 2 cut(s) 140, 360
BaeGI GKGCMC 1 cut(s) 202
BanII GRGCYC 2 cut(s) 202, 304
BbrPI CACGTG 1 cut(s) 427
Bbv12I GWGCWC 2 cut(s) 169, 304
BbvI GCAGC 2 cut(s) 111, 162
BceAI ACGGC 4 cut(s) 112, 235, 363, 384
BcgI CGANNNNNNTGC 4 cut(s) 106, 140, 360, 394
BciT130I CCWGG 1 cut(s) 524
BcnI CCSGG 2 cut(s) 206, 478
BcoDI GTCTC 1 cut(s) 107
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 1 cut(s) 329
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 7 cut(s) 100, 125, 148, 151, 176, 226, 261
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 7 cut(s) 101, 126, 149, 152, 177, 227, 262
Bme1390I CCNGG 3 cut(s) 206, 478, 524
Bme18I GGWCC 2 cut(s) 140, 360
BmgT120I GGNCC 6 cut(s) 140, 198, 199, 235, 360, 408
BmiI GGNNCC 7 cut(s) 141, 142, 199, 200, 362, 410, 521
BmrFI CCNGG 3 cut(s) 206, 478, 524
BpmI CTGGAG 1 cut(s) 524
Bpu1102I GCTNAGC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 446
BpuMI CCSGG 2 cut(s) 206, 478
BsaAI YACGTR 1 cut(s) 427
BsaHI GRCGYC 3 cut(s) 97, 187, 350
BsaJI CCNNGG 3 cut(s) 242, 316, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 243
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 3 cut(s) 242, 316, 453
BseLI CCNNNNNNNGG 2 cut(s) 106, 243
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 202
BseX3I CGGCCG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 111, 162
BseYI CCCAGC 1 cut(s) 143
Bsh1236I CGCG 5 cut(s) 163, 175, 211, 244, 263
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 6 cut(s) 178, 200, 236, 250, 260, 409
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 2 cut(s) 169, 304
BsiSI CCGG 4 cut(s) 154, 206, 233, 477
BslFI GGGAC 2 cut(s) 126, 471
BslI CCNNNNNNNGG 2 cut(s) 106, 243
BsmAI GTCTC 1 cut(s) 107
BsmBI CGTCTC 1 cut(s) 107
BsmFI GGGAC 2 cut(s) 126, 471
BsnI GGCC 6 cut(s) 178, 200, 236, 250, 260, 409
Bsp120I GGGCCC 1 cut(s) 198
Bsp1286I GDGCHC 3 cut(s) 169, 202, 304
Bsp143I GATC 2 cut(s) 218, 415
Bsp1720I GCTNAGC 1 cut(s) 311
Bsp19I CCATGG 2 cut(s) 316, 453
BspANI GGCC 6 cut(s) 178, 200, 236, 250, 260, 409
BspCNI CTCAG 1 cut(s) 303
BspFNI CGCG 5 cut(s) 163, 175, 211, 244, 263
BspLI GGNNCC 7 cut(s) 141, 142, 199, 200, 362, 410, 521
BspPI GGATC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 378
BssECI CCNNGG 3 cut(s) 242, 316, 453
BssMI GATC 2 cut(s) 218, 415
BssNI GRCGYC 3 cut(s) 97, 187, 350
BssT1I CCWWGG 2 cut(s) 316, 453
Bst2UI CCWGG 1 cut(s) 524
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 3 cut(s) 97, 187, 350
BstAPI GCANNNNNTGC 1 cut(s) 514
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 4 cut(s) 122, 165, 515, 544
BstDEI CTNAG 2 cut(s) 311, 484
BstDSI CCRYGG 3 cut(s) 242, 316, 453
BstFNI CGCG 5 cut(s) 163, 175, 211, 244, 263
BstHHI GCGC 2 cut(s) 163, 211
BstKTI GATC 2 cut(s) 221, 418
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 218, 415
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 206, 514
BstNI CCWGG 1 cut(s) 524
BstSCI CCNGG 3 cut(s) 204, 476, 522
BstSLI GKGCMC 1 cut(s) 202
BstUI CGCG 5 cut(s) 163, 175, 211, 244, 263
BstV1I GCAGC 2 cut(s) 111, 162
BstZI CGGCCG 1 cut(s) 258
BsuRI GGCC 6 cut(s) 178, 200, 236, 250, 260, 409
BtgI CCRYGG 3 cut(s) 242, 316, 453
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 4 cut(s) 122, 165, 515, 544
CfoI GCGC 2 cut(s) 163, 211
Cfr13I GGNCC 6 cut(s) 140, 198, 199, 235, 360, 408
Cfr42I CCGCGG 1 cut(s) 245
CseI GACGC 2 cut(s) 105, 339
CsiI ACCWGGT 1 cut(s) 522
CviAII CATG 3 cut(s) 317, 334, 454
DdeI CTNAG 2 cut(s) 311, 484
DpnI GATC 2 cut(s) 220, 417
DpnII GATC 2 cut(s) 218, 415
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 3 cut(s) 176, 248, 258
EagI CGGCCG 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 302
EclXI CGGCCG 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 316, 453
Eco24I GRGCYC 2 cut(s) 202, 304
Eco47I GGWCC 2 cut(s) 140, 360
Eco52I CGGCCG 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 302
Eco72I CACGTG 1 cut(s) 427
EcoICRI GAGCTC 1 cut(s) 302
EcoO109I RGGNCCY 2 cut(s) 140, 198
EcoRII CCWGG 1 cut(s) 522
EcoT14I CCWWGG 2 cut(s) 316, 453
EcoT38I GRGCYC 2 cut(s) 202, 304
ErhI CCWWGG 2 cut(s) 316, 453
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 3 cut(s) 320, 337, 457
FaiI YATR 5 cut(s) 318, 335, 420, 422, 455
FaqI GGGAC 2 cut(s) 126, 471
FatI CATG 3 cut(s) 316, 333, 453
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 7 cut(s) 100, 125, 148, 151, 176, 226, 261
FriOI GRGCYC 2 cut(s) 202, 304
Fsp4HI GCNGC 7 cut(s) 100, 125, 148, 151, 176, 226, 261
FspBI CTAG 1 cut(s) 329
GlaI GCGC 2 cut(s) 162, 210
GluI GCNGC 7 cut(s) 100, 125, 148, 151, 176, 226, 261
GsaI CCCAGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 524
HaeIII GGCC 6 cut(s) 178, 200, 236, 250, 260, 409
HapII CCGG 4 cut(s) 154, 206, 233, 477
HgaI GACGC 2 cut(s) 105, 339
HhaI GCGC 2 cut(s) 163, 211
Hin1I GRCGYC 3 cut(s) 97, 187, 350
Hin1II CATG 3 cut(s) 320, 337, 457
Hin6I GCGC 2 cut(s) 161, 209
HinP1I GCGC 2 cut(s) 161, 209
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 2 cut(s) 76, 459
HpaII CCGG 4 cut(s) 154, 206, 233, 477
HphI GGTGA 2 cut(s) 45, 538
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 3 cut(s) 81, 275, 473
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 5 cut(s) 256, 259, 355, 382, 385
HpyAV CCTTC 1 cut(s) 60
HpyCH4IV ACGT 2 cut(s) 187, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 514
HpyF3I CTNAG 2 cut(s) 311, 484
HpySE526I ACGT 2 cut(s) 187, 426
Hsp92I GRCGYC 3 cut(s) 97, 187, 350
Hsp92II CATG 3 cut(s) 320, 337, 457
HspAI GCGC 2 cut(s) 161, 209
KflI GGGWCCC 1 cut(s) 140
KspI CCGCGG 1 cut(s) 245
Kzo9I GATC 2 cut(s) 218, 415
LmnI GCTCC 4 cut(s) 22, 52, 441, 505
Lsp1109I GCAGC 2 cut(s) 111, 162
MabI ACCWGGT 1 cut(s) 522
MaeI CTAG 1 cut(s) 329
MaeII ACGT 2 cut(s) 187, 426
MaeIII GTNAC 2 cut(s) 183, 526
MalI GATC 2 cut(s) 220, 417
MboI GATC 2 cut(s) 218, 415
MboII GAAGA 2 cut(s) 53, 442
MhlI GDGCHC 3 cut(s) 169, 202, 304
MlyI GAGTC 2 cut(s) 70, 453
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 5 cut(s) 23, 32, 69, 150, 378
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 4 cut(s) 154, 206, 233, 477
MspR9I CCNGG 3 cut(s) 206, 478, 524
MvaI CCWGG 1 cut(s) 524
MvnI CGCG 5 cut(s) 163, 175, 211, 244, 263
MwoI GCNNNNNNNGC 2 cut(s) 206, 514
NciI CCSGG 2 cut(s) 206, 478
NcoI CCATGG 2 cut(s) 316, 453
NdeII GATC 2 cut(s) 218, 415
NlaIII CATG 3 cut(s) 320, 337, 457
NlaIV GGNNCC 7 cut(s) 141, 142, 199, 200, 362, 410, 521
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 2 cut(s) 183, 526
PcsI WCGNNNNNNNCGW 5 cut(s) 77, 113, 260, 347, 374
PkrI GCNGC 7 cut(s) 101, 126, 149, 152, 177, 227, 262
PleI GAGTC 2 cut(s) 70, 453
PmaCI CACGTG 1 cut(s) 427
PmlI CACGTG 1 cut(s) 427
PpsI GAGTC 2 cut(s) 70, 453
Ppu21I YACGTR 1 cut(s) 427
PpuMI RGGWCCY 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 522
PspCI CACGTG 1 cut(s) 427
PspFI CCCAGC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 7 cut(s) 141, 142, 199, 200, 362, 410, 521
PspOMI GGGCCC 1 cut(s) 198
PspPI GGNCC 6 cut(s) 140, 198, 199, 235, 360, 408
PspPPI RGGWCCY 1 cut(s) 140
SacI GAGCTC 1 cut(s) 304
SacII CCGCGG 1 cut(s) 245
SalI GTCGAC 1 cut(s) 379
SatI GCNGC 7 cut(s) 100, 125, 148, 151, 176, 226, 261
Sau3AI GATC 2 cut(s) 218, 415
Sau96I GGNCC 6 cut(s) 140, 198, 199, 235, 360, 408
SchI GAGTC 2 cut(s) 70, 453
ScrFI CCNGG 3 cut(s) 206, 478, 524
SduI GDGCHC 3 cut(s) 169, 202, 304
SexAI ACCWGGT 1 cut(s) 522
Sfr303I CCGCGG 1 cut(s) 245
SgrBI CCGCGG 1 cut(s) 245
SgrDI CGTCGACG 1 cut(s) 379
SinI GGWCC 2 cut(s) 140, 360
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SpeI ACTAGT 1 cut(s) 328
SspMI CTAG 1 cut(s) 329
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 3 cut(s) 204, 476, 522
StyI CCWWGG 2 cut(s) 316, 453
TaiI ACGT 2 cut(s) 190, 429
TaqI TCGA 2 cut(s) 341, 380
TauI GCSGC 5 cut(s) 102, 150, 178, 228, 263
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 2 cut(s) 183, 526
TseI GCWGC 2 cut(s) 124, 150
Tsp45I GTSAC 2 cut(s) 183, 526
TspDTI ATGAA 1 cut(s) 522
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 2 cut(s) 140, 360
XmiI GTMKAC 1 cut(s) 380
XspI CTAG 1 cut(s) 329
ZraI GACGTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.