AT1G79900

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
30051955 .. 30053936
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79900.1

Sequence Viewer

Length: 891 bp
ATGGATTTCTGGCCGGAGTTTATGGCGACCAGCTGGGGAAGAGAGTTCGTCGCCGGTGGTTTCGGTGGCGTCGCCGGCATCATCTCCGGCTACCCCTTGGACACCCTCAGAATTCGCCAGCAACAGAGCTCGAAATCTGGATCTGCCTTCTCCATTCTCCGGCGGATGCTCGCCATTGAGGGTCCCTCCTCTCTCTACAGAGGCATGGCTGCGCCTTTGGCCTCCGTCACTTTTCAGAATGCTATGGTATTCCAGATATACGCCATATTCTCTCGCTCTTTTGATTCCTCTGTTCCTCTGGTAGAGCCTCCTTCCTACAGAGGCGTTGCTCTTGGTGGTGTTGCCACCGGTGCTGTACAGAGCCTCTTGCTCACCCCTGTCGAGCTCATCAAGATTCGTCTCCAGCTTCAGCAGACTAAGTCTGGTCCCATCACCTTGGCCAAGAGCATCCTTAGGAGACAGGGCCTTCAGGGGCTTTACAGAGGCCTCACCATCACCGTGCTCCGAGATGCTCCCGCTCATGGCCTCTACTTCTGGACCTATGAGTACGTCAGAGAAAGGCTTCACCCCGGCTGCAGAAAGACCGGACAAGAAAACCTCAGGACCATGCTCGTGGCTGGTGGCCTTGCTGGAGTGGCCAGCTGGGTCGCTTGTTATCCTCTTGATGTCGTCAAGACCAGACTCCAACAAGGTCATGGGGCTTACGAGGGCATTGCCGATTGTTTTCGCAAGAGCGTCAAACAGGAAGGCTATACGGTTCTCTGGCGTGGCCTCGGGACTGCAGTTGCCAGGGCCTTTGTGGTCAACGGTGCTATCTTTGCTGCTTATGAGGTAGCCTTGCGGTGTCTATTCAATCAATCGCCATCCCCAGATATTGTCACAGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

296

Amino Acids

32.25

Weight (kDa)

9.69

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 11 - 94 4.2e-14 Mitochondrial carrier protein
Mito_carr PF00153 110 - 189 2.1e-21 Mitochondrial carrier protein
Mito_carr PF00153 201 - 285 5.7e-23 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 518
AciI CCGC 3 cut(s) 163, 516, 841
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 3 cut(s) 11, 438, 636
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 2 cut(s) 392, 452
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 2 cut(s) 357, 548
AfiI CCNNNNNNNGG 2 cut(s) 159, 521
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 1 cut(s) 853
AjnI CCWGG 1 cut(s) 788
AluBI AGCT 5 cut(s) 33, 129, 385, 406, 642
AluI AGCT 5 cut(s) 33, 129, 385, 406, 642
Alw21I GWGCWC 3 cut(s) 131, 387, 504
Alw26I GTCTC 2 cut(s) 404, 451
AlwI GGATC 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 773
ApeKI GCWGC 3 cut(s) 209, 573, 821
ApoI RAATTY 1 cut(s) 111
AsiGI ACCGGT 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 561
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 6 cut(s) 182, 425, 463, 537, 603, 792
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 5 cut(s) 364, 424, 481, 487, 557
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 4 cut(s) 182, 425, 537, 603
AxyI CCTNAGG 2 cut(s) 452, 599
BalI TGGCCA 2 cut(s) 440, 638
BanII GRGCYC 2 cut(s) 131, 387
BauI CACGAG 1 cut(s) 611
Bbv12I GWGCWC 3 cut(s) 131, 387, 504
BbvI GCAGC 3 cut(s) 196, 560, 808
BccI CCATC 3 cut(s) 437, 500, 871
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 1 cut(s) 790
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 2 cut(s) 404, 451
BfmI CTRYAG 4 cut(s) 196, 316, 574, 780
BisI GCNGC 3 cut(s) 210, 574, 822
BlsI GCNGC 3 cut(s) 211, 575, 823
Bme1390I CCNGG 2 cut(s) 570, 790
Bme18I GGWCC 4 cut(s) 182, 425, 537, 603
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 6 cut(s) 182, 425, 463, 537, 603, 792
BmiI GGNNCC 3 cut(s) 183, 184, 427
BmrFI CCNGG 2 cut(s) 570, 790
BmsI GCATC 4 cut(s) 87, 156, 456, 499
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 2 cut(s) 386, 651
BpuMI CCSGG 1 cut(s) 570
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 5 cut(s) 96, 435, 568, 772, 789
BsaWI WCCGGW 2 cut(s) 347, 584
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 521
Bse118I RCCGGY 3 cut(s) 53, 74, 347
Bse21I CCTNAGG 2 cut(s) 452, 599
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 1 cut(s) 790
BseDI CCNNGG 5 cut(s) 96, 435, 568, 772, 789
BseGI GGATG 3 cut(s) 171, 447, 863
BseLI CCNNNNNNNGG 2 cut(s) 159, 521
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 2 cut(s) 121, 613
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 3 cut(s) 196, 560, 808
BseYI CCCAGC 2 cut(s) 33, 642
BshTI ACCGGT 1 cut(s) 347
BsiHKAI GWGCWC 3 cut(s) 131, 387, 504
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 8 cut(s) 14, 54, 75, 87, 160, 348, 570, 585
BslFI GGGAC 3 cut(s) 168, 411, 790
BslI CCNNNNNNNGG 2 cut(s) 159, 521
BsmAI GTCTC 2 cut(s) 404, 451
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 3 cut(s) 168, 411, 790
BsmI GAATGC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 773
Bsp1286I GDGCHC 3 cut(s) 131, 387, 504
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 1 cut(s) 140
BspACI CCGC 3 cut(s) 163, 516, 841
BspCNI CTCAG 2 cut(s) 120, 612
BspLI GGNNCC 3 cut(s) 183, 184, 427
BspMAI CTGCAG 2 cut(s) 578, 784
BspPI GGATC 1 cut(s) 148
BsrBI CCGCTC 1 cut(s) 518
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 3 cut(s) 53, 74, 347
BsrGI TGTACA 1 cut(s) 355
BssAI RCCGGY 3 cut(s) 53, 74, 347
BssECI CCNNGG 5 cut(s) 96, 435, 568, 772, 789
BssMI GATC 1 cut(s) 140
BssNI GRCGYC 1 cut(s) 69
BssSI CACGAG 1 cut(s) 611
BssT1I CCWWGG 2 cut(s) 96, 435
Bst2BI CACGAG 1 cut(s) 611
Bst2UI CCWGG 1 cut(s) 790
Bst4CI ACNGT 3 cut(s) 499, 757, 809
Bst6I CTCTTC 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 69
BstAUI TGTACA 1 cut(s) 355
BstC8I GCNNGC 4 cut(s) 76, 119, 171, 640
BstDEI CTNAG 4 cut(s) 107, 417, 452, 599
BstF5I GGATG 3 cut(s) 171, 447, 863
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 143
BstMAI GTCTC 2 cut(s) 404, 451
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 5 cut(s) 75, 218, 350, 635, 818
BstNI CCWGG 1 cut(s) 790
BstSCI CCNGG 2 cut(s) 568, 788
BstSFI CTRYAG 4 cut(s) 196, 316, 574, 780
BstV1I GCAGC 3 cut(s) 196, 560, 808
BstX2I RGATCY 1 cut(s) 140
BstXI CCANNNNNNTGG 2 cut(s) 436, 613
BstYI RGATCY 1 cut(s) 140
Bsu36I CCTNAGG 2 cut(s) 452, 599
BtsCI GGATG 3 cut(s) 171, 447, 863
Cac8I GCNNGC 4 cut(s) 76, 119, 171, 640
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 3 cut(s) 53, 74, 347
Cfr13I GGNCC 6 cut(s) 182, 425, 463, 537, 603, 792
CseI GACGC 2 cut(s) 58, 724
Csp6I GTAC 2 cut(s) 356, 547
CspAI ACCGGT 1 cut(s) 347
CviAII CATG 4 cut(s) 205, 521, 607, 695
CviQI GTAC 2 cut(s) 356, 547
DdeI CTNAG 4 cut(s) 107, 417, 452, 599
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
EaeI YGGCCR 3 cut(s) 11, 438, 636
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 178
Ecl136II GAGCTC 2 cut(s) 129, 385
Eco130I CCWWGG 2 cut(s) 96, 435
Eco147I AGGCCT 1 cut(s) 486
Eco24I GRGCYC 2 cut(s) 131, 387
Eco47I GGWCC 4 cut(s) 182, 425, 537, 603
Eco53kI GAGCTC 2 cut(s) 129, 385
Eco57I CTGAAG 2 cut(s) 392, 452
Eco81I CCTNAGG 2 cut(s) 452, 599
Eco88I CYCGRG 1 cut(s) 773
EcoICRI GAGCTC 2 cut(s) 129, 385
EcoO109I RGGNCCY 3 cut(s) 182, 463, 792
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 788
EcoT14I CCWWGG 2 cut(s) 96, 435
EcoT38I GRGCYC 2 cut(s) 131, 387
ErhI CCWWGG 2 cut(s) 96, 435
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 4 cut(s) 208, 524, 610, 698
FaqI GGGAC 3 cut(s) 168, 411, 790
FatI CATG 4 cut(s) 204, 520, 606, 694
FauI CCCGC 1 cut(s) 523
Fnu4HI GCNGC 3 cut(s) 210, 574, 822
FokI GGATG 3 cut(s) 178, 434, 850
FriOI GRGCYC 2 cut(s) 131, 387
Fsp4HI GCNGC 3 cut(s) 210, 574, 822
GlaI GCGC 1 cut(s) 213
GluI GCNGC 3 cut(s) 210, 574, 822
GsaI CCCAGC 2 cut(s) 37, 646
GsuI CTGGAG 2 cut(s) 386, 651
HapII CCGG 8 cut(s) 14, 54, 75, 87, 160, 348, 570, 585
HgaI GACGC 2 cut(s) 58, 724
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 4 cut(s) 208, 524, 610, 698
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 3 cut(s) 284, 394, 681
HpaII CCGG 8 cut(s) 14, 54, 75, 87, 160, 348, 570, 585
HphI GGTGA 5 cut(s) 364, 424, 481, 487, 557
Hpy166II GTNNAC 1 cut(s) 805
Hpy188I TCNGA 4 cut(s) 110, 237, 506, 554
Hpy188III TCNNGA 8 cut(s) 138, 253, 391, 535, 601, 662, 673, 775
Hpy8I GTNNAC 1 cut(s) 805
Hpy99I CGWCG 2 cut(s) 53, 74
HpyAV CCTTC 4 cut(s) 157, 321, 476, 740
HpyCH4III ACNGT 3 cut(s) 499, 757, 809
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 2 cut(s) 576, 782
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 218, 350, 635, 818
HpyF3I CTNAG 4 cut(s) 107, 417, 452, 599
HpySE526I ACGT 1 cut(s) 549
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 4 cut(s) 208, 524, 610, 698
HspAI GCGC 1 cut(s) 212
KflI GGGWCCC 1 cut(s) 182
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 507, 517
Lsp1109I GCAGC 3 cut(s) 196, 560, 808
LweI GCATC 4 cut(s) 87, 156, 456, 499
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 2 cut(s) 226, 877
MalI GATC 1 cut(s) 142
MbiI CCGCTC 1 cut(s) 518
MboI GATC 1 cut(s) 140
MboII GAAGA 1 cut(s) 51
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 3 cut(s) 131, 387, 504
MlsI TGGCCA 2 cut(s) 440, 638
MluCI AATT 1 cut(s) 111
MluNI TGGCCA 2 cut(s) 440, 638
MlyI GAGTC 1 cut(s) 675
MmeI TCCRAC 1 cut(s) 709
Mox20I TGGCCA 2 cut(s) 440, 638
MroNI GCCGGC 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 561
MscI TGGCCA 2 cut(s) 440, 638
MslI CAYNNNNRTG 2 cut(s) 497, 611
Msp20I TGGCCA 2 cut(s) 440, 638
MspA1I CMGCKG 2 cut(s) 33, 642
MspI CCGG 8 cut(s) 14, 54, 75, 87, 160, 348, 570, 585
MspR9I CCNGG 2 cut(s) 570, 790
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 1 cut(s) 790
MwoI GCNNNNNNNGC 5 cut(s) 75, 218, 350, 635, 818
NaeI GCCGGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 570
NdeII GATC 1 cut(s) 140
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 4 cut(s) 208, 524, 610, 698
NlaIV GGNNCC 3 cut(s) 183, 184, 427
NmuCI GTSAC 2 cut(s) 226, 877
PceI AGGCCT 1 cut(s) 486
PctI GAATGC 1 cut(s) 244
PdiI GCCGGC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 284, 394
PflFI GACNNNGTC 1 cut(s) 418
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 3 cut(s) 211, 575, 823
PleI GAGTC 1 cut(s) 675
PpsI GAGTC 1 cut(s) 675
PpuMI RGGWCCY 1 cut(s) 182
Psp124BI GAGCTC 2 cut(s) 131, 387
Psp5II RGGWCCY 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 788
PspFI CCCAGC 2 cut(s) 33, 642
PspGI CCWGG 1 cut(s) 788
PspN4I GGNNCC 3 cut(s) 183, 184, 427
PspPI GGNCC 6 cut(s) 182, 425, 463, 537, 603, 792
PspPPI RGGWCCY 1 cut(s) 182
PstI CTGCAG 2 cut(s) 578, 784
PsuI RGATCY 1 cut(s) 140
PsyI GACNNNGTC 1 cut(s) 418
PvuII CAGCTG 2 cut(s) 33, 642
RsaI GTAC 2 cut(s) 357, 548
RsaNI GTAC 2 cut(s) 356, 547
RseI CAYNNNNRTG 2 cut(s) 497, 611
SacI GAGCTC 2 cut(s) 131, 387
SatI GCNGC 3 cut(s) 210, 574, 822
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 6 cut(s) 182, 425, 463, 537, 603, 792
SchI GAGTC 1 cut(s) 675
ScrFI CCNGG 2 cut(s) 570, 790
SduI GDGCHC 3 cut(s) 131, 387, 504
SfaNI GCATC 4 cut(s) 87, 156, 456, 499
SfcI CTRYAG 4 cut(s) 196, 316, 574, 780
SgrAI CRCCGGYG 2 cut(s) 53, 347
SinI GGWCC 4 cut(s) 182, 425, 537, 603
SmiMI CAYNNNNRTG 2 cut(s) 497, 611
Sse9I AATT 1 cut(s) 111
SseBI AGGCCT 1 cut(s) 486
SsiI CCGC 3 cut(s) 163, 516, 841
SstI GAGCTC 2 cut(s) 131, 387
StuI AGGCCT 1 cut(s) 486
StyD4I CCNGG 2 cut(s) 568, 788
StyI CCWWGG 2 cut(s) 96, 435
TaaI ACNGT 3 cut(s) 499, 757, 809
TaiI ACGT 1 cut(s) 552
TaqI TCGA 2 cut(s) 131, 381
TasI AATT 1 cut(s) 111
TatI WGTACW 1 cut(s) 355
TfiI GAWTC 2 cut(s) 284, 394
TseFI GTSAC 2 cut(s) 226, 877
TseI GCWGC 3 cut(s) 209, 573, 821
Tsp45I GTSAC 2 cut(s) 226, 877
TspGWI ACGGA 1 cut(s) 214
Tth111I GACNNNGTC 1 cut(s) 418
VpaK11BI GGWCC 4 cut(s) 182, 425, 537, 603
XapI RAATTY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 2 cut(s) 692, 796
XmnI GAANNNNTTC 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.