Rorug02G0350100

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004732
Physical Location & Seq
Forward (+)
43988543 .. 43989416
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0350100.1

Sequence Viewer

Length: 318 bp
ATGTCTGAACACTACCAAGAAAACATGGTTGAGGAGAATCCTGTTGGTGTTGACACAGAAGTTGCAAACATTACTTGCAATCTTGAAGCTGTTCGAGCTGTGCTTGAGGATGCTGAGAGCAGACAACTGAAGGAGGACAATGTGAGGCTTTGGCTGAATGATCTTACACAACTTTGCTATGAGATGGAAGATGTGTTGGATGAGTGGAACACTGCAGTTCAAAAGAGACAAATGGAGAAACAAGAAAATGGAGATGAAGATGGCATTGTTACCAAGAAGAAGGTATGTTTCTCCATTCCTTCCTCTTGCTTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

105

Amino Acids

12.14

Weight (kDa)

4.3

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 15 - 81 7.9e-18 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 86, 221
AluBI AGCT 2 cut(s) 89, 98
AluI AGCT 2 cut(s) 89, 98
Alw26I GTCTC 1 cut(s) 220
Asp700I GAANNNNTTC 1 cut(s) 90
BccI CCATC 2 cut(s) 178, 254
BcoDI GTCTC 1 cut(s) 220
BfmI CTRYAG 1 cut(s) 213
BmsI GCATC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 125
BseGI GGATG 2 cut(s) 115, 205
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 217
BssMI GATC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 115, 205
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 115, 205
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
CviAII CATG 1 cut(s) 25
CviJI RGCY 4 cut(s) 89, 98, 148, 154
CviKI_1 RGCY 4 cut(s) 89, 98, 148, 154
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 149
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 180, 286
FatI CATG 1 cut(s) 24
FokI GGATG 2 cut(s) 122, 212
Hin1II CATG 1 cut(s) 28
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 3 cut(s) 124, 274, 309
HpyCH4V TGCA 3 cut(s) 65, 78, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 1 cut(s) 54
LweI GCATC 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 268
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 3 cut(s) 200, 269, 289
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 5 cut(s) 25, 100, 127, 138, 313
MroXI GAANNNNTTC 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 217
Sau3AI GATC 1 cut(s) 160
SetI ASST 3 cut(s) 91, 100, 285
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 213
SgeI CNNG 9 cut(s) 29, 37, 53, 87, 95, 107, 116, 254, 286
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
TaqI TCGA 2 cut(s) 94, 312
TfiI GAWTC 1 cut(s) 37
TscAI CASTG 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 270
TspRI CASTG 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.