Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004732

Physical Location & Seq

Genomic Coordinates Forward (+)

24568574 .. 24571064

Gene Structure 2491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g31440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGATTTCTGGCCGGAGTTTCTTGCAAACAGCTGGGGAAAAGAATTTGTGGCAGGAGGATTTGGAGGCATTGCTGGTATAGTATCTGGGTATCCACTTGACACTGTTAGAATTTTGCAGCAGAATTCCAAAGGTGGCTCTGCTTTTAACATTCTTCGCAATGTCATCTCCAAAGAAGGCCCTACTGCCCTTTACAGGGGCATGGGTGCTCCCTTGGCATCCATCACATTTCAGAATGCTATGGTTTTCCAGTCATACGCCATTCTCTCTGGGGCTCTTGATCCATCAGTGTCCACTAAAGATCCTCCTTCTTACAAAGGTGTTGCTCTAGGAGGAGTTGGGGCAGGTGCTTTGCAGAGTCTAATCCTCTCCCCAGTAGAACTCGTAAAAATCCGGCTTCAACTGCAAACCAAAACCCAAAAAGGACCCAGAGAAGTTGCGAAAAGCATAATGAAAGCAGAAGGGTTAAGAGGATTATATAGAGGCCTCGGCATTACTATTCTCAGGGATGCACCAGCTCATGGTTTGTACTTTTGGACTTATGAGTATACGAGAGAGCAACTTCATCCTGGCTGTAGAAAATCCGGCGAAGAGAGCTTACAAACAATGTTGGTGGCAGGAGGGCTAGCAGGAGTAGCTAGCTGGATTTCTTGTTATCCGTTGGATGTGGTAAAAACCAGATTACAGGCTCAATCTTCATACCCTCCACCGAAATATACTGGCATAGTTGATTGCTTCAGGAAAAGTGTGAGAGCTGATGGTTACGCCGTGCTGTGGCGAGGACTTGGAACTGCGGTTTCTAGAGCCTTTCTGGTGAATGGGGCTATTTTTGCGGCCTATGAGATTGCTCTGAGGTGCCTTTTCAGCAATGGAAGCATTCCACAAGAGAATGCAATGCCTGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

303

Amino Acids

32.45

Weight (kDa)

9.37

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	11 - 89	6.8e-14	Mitochondrial carrier protein
Mito_carr	PF00153	109 - 188	7.8e-23	Mitochondrial carrier protein
Mito_carr	PF00153	199 - 288	1.2e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79900
fragaria_vesca	FvH4_6g31430 FvH4_6g31440 FvH4_6g31440
malus_domestica	MD09G1211700.v1.1 MD17G1194000.v1.1
prunus_persica	Prupe.3G069700_v2.0.a1
pyrus_communis	pycom09g12890 pycom17g19990
rosa_chinensis	RchiOBHm_Chr2g0138231 RchiOBHm_Chr2g0138241
rosa_laevigata	RLG00000019727 RLG00000019728
rosa_multiflora	Rmu_sc0004576.1_g000030 Rmu_sc0004576.1_g000031 Rmu_sc0006570.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106390 Rroxscaffold_2G00106400
rosa_rugosa	Rorug02G0350000 Rorug02G0350100 Rorug02G0350200
rosa_samantha	Rh2AG396600 Rh2AG396700 Rh2BG409600 Rh2BG409800 Rh2CG383100 Rh2CG383200 Rh2DG418300 Rh2DG418500
rosa_wichuraiana	Rw2G032430 Rw2G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	335
Acc36I	ACCTGC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	855
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	548
AciI	CCGC	2 cut(s)	794, 833
AclWI	GGATC	2 cut(s)	275, 296
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	3 cut(s)	44, 111, 124
AcuI	CTGAAG	1 cut(s)	721
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	4 cut(s)	195, 196, 521, 774
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	6 cut(s)	33, 518, 597, 638, 642, 755
AluI	AGCT	6 cut(s)	33, 518, 597, 638, 642, 755
Alw21I	GWGCWC	1 cut(s)	211
AlwI	GGATC	2 cut(s)	275, 296
AoxI	GGCC	4 cut(s)	11, 178, 484, 834
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	3 cut(s)	44, 111, 124
AspS9I	GGNCC	2 cut(s)	179, 425
AsuHPI	GGTGA	1 cut(s)	826
AsuNHI	GCTAGC	2 cut(s)	625, 638
AvaII	GGWCC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	855
BanII	GRGCYC	1 cut(s)	277
BarI	GAAGNNNNNNTAC	2 cut(s)	582, 614
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	230, 292, 752
BceAI	ACGGC	1 cut(s)	752
BciT130I	CCWGG	1 cut(s)	570
BciVI	GTATCC	1 cut(s)	102
BfaI	CTAG	4 cut(s)	329, 626, 639, 801
BfmI	CTRYAG	2 cut(s)	574, 900
BfuAI	ACCTGC	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	102
BisI	GCNGC	2 cut(s)	119, 834
BlsI	GCNGC	2 cut(s)	120, 835
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	2 cut(s)	179, 425
BmiI	GGNNCC	2 cut(s)	427, 857
BmrFI	CCNGG	1 cut(s)	570
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	2 cut(s)	227, 499
BmtI	GCTAGC	2 cut(s)	629, 642
BmuI	ACTGGG	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	213, 487
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 196, 521, 774
Bse1I	ACTGG	3 cut(s)	250, 374, 724
Bse3DI	GCAATG	4 cut(s)	69, 166, 874, 900
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	213, 487
BseGI	GGATG	4 cut(s)	218, 514, 565, 670
BseLI	CCNNNNNNNGG	4 cut(s)	195, 196, 521, 774
BseMI	GCAATG	4 cut(s)	69, 166, 874, 900
BseMII	CTCAG	2 cut(s)	517, 842
BseNI	ACTGG	3 cut(s)	250, 374, 724
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	130
BseYI	CCCAGC	1 cut(s)	33
BshFI	GGCC	4 cut(s)	13, 180, 486, 836
BshNI	GGYRCC	1 cut(s)	855
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	3 cut(s)	14, 394, 585
BslI	CCNNNNNNNGG	4 cut(s)	195, 196, 521, 774
BsmI	GAATGC	3 cut(s)	241, 876, 895
BsnI	GGCC	4 cut(s)	13, 180, 486, 836
Bsp1286I	GDGCHC	2 cut(s)	211, 277
Bsp143I	GATC	2 cut(s)	280, 301
BspACI	CCGC	2 cut(s)	794, 833
BspANI	GGCC	4 cut(s)	13, 180, 486, 836
BspCNI	CTCAG	2 cut(s)	516, 843
BspLI	GGNNCC	2 cut(s)	427, 857
BspMAI	CTGCAG	1 cut(s)	904
BspMI	ACCTGC	1 cut(s)	335
BspOI	GCTAGC	2 cut(s)	629, 642
BspPI	GGATC	2 cut(s)	275, 296
BspT107I	GGYRCC	1 cut(s)	855
BsrDI	GCAATG	4 cut(s)	69, 166, 874, 900
BsrI	ACTGG	3 cut(s)	250, 374, 724
BssECI	CCNNGG	2 cut(s)	213, 487
BssMI	GATC	2 cut(s)	280, 301
BssNAI	GTATAC	1 cut(s)	549
BssT1I	CCWWGG	1 cut(s)	213
Bst1107I	GTATAC	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	585
BstAPI	GCANNNNNTGC	1 cut(s)	899
BstC8I	GCNNGC	3 cut(s)	627, 640, 900
BstDEI	CTNAG	2 cut(s)	503, 851
BstF5I	GGATG	4 cut(s)	218, 514, 565, 670
BstKTI	GATC	2 cut(s)	283, 304
BstMBI	GATC	2 cut(s)	280, 301
BstMWI	GCNNNNNNNGC	8 cut(s)	215, 403, 594, 635, 830, 864, 873, 899
BstNI	CCWGG	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	2 cut(s)	574, 900
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BstZ17I	GTATAC	1 cut(s)	549
BsuI	GTATCC	1 cut(s)	102
BsuRI	GGCC	4 cut(s)	13, 180, 486, 836
BtsCI	GGATG	4 cut(s)	218, 514, 565, 670
BtsIMutI	CAGTG	2 cut(s)	102, 294
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	3 cut(s)	627, 640, 900
Cfr13I	GGNCC	2 cut(s)	179, 425
Csp6I	GTAC	1 cut(s)	529
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	2 cut(s)	202, 521
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	2 cut(s)	503, 851
DpnI	GATC	2 cut(s)	282, 303
DpnII	GATC	2 cut(s)	280, 301
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	721
EcoO109I	RGGNCCY	2 cut(s)	179, 425
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	205, 524
FatI	CATG	2 cut(s)	201, 520
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	2 cut(s)	119, 834
FokI	GGATG	4 cut(s)	205, 521, 552, 677
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	2 cut(s)	119, 834
FspBI	CTAG	4 cut(s)	329, 626, 639, 801
GluI	GCNGC	2 cut(s)	119, 834
GsaI	CCCAGC	1 cut(s)	37
HaeIII	GGCC	4 cut(s)	13, 180, 486, 836
HapII	CCGG	3 cut(s)	14, 394, 585
Hin1II	CATG	2 cut(s)	205, 524
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	3 cut(s)	14, 394, 585
HphI	GGTGA	1 cut(s)	826
Hpy166II	GTNNAC	2 cut(s)	294, 549
Hpy188I	TCNGA	2 cut(s)	234, 852
Hpy188III	TCNNGA	3 cut(s)	278, 739, 801
Hpy8I	GTNNAC	2 cut(s)	294, 549
HpyAV	CCTTC	3 cut(s)	170, 318, 455
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	7 cut(s)	26, 118, 355, 406, 512, 893, 902
HpyF10VI	GCNNNNNNNGC	8 cut(s)	215, 403, 594, 635, 830, 864, 873, 899
HpyF3I	CTNAG	2 cut(s)	503, 851
Hsp92II	CATG	2 cut(s)	205, 524
Kzo9I	GATC	2 cut(s)	280, 301
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	2 cut(s)	227, 499
MaeI	CTAG	4 cut(s)	329, 626, 639, 801
MaeIII	GTNAC	1 cut(s)	761
MalI	GATC	2 cut(s)	282, 303
MboI	GATC	2 cut(s)	280, 301
MboII	GAAGA	3 cut(s)	146, 602, 687
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	2 cut(s)	211, 277
MluCI	AATT	3 cut(s)	44, 111, 124
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	642
MseI	TTAA	2 cut(s)	147, 467
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	3 cut(s)	14, 394, 585
MspR9I	CCNGG	1 cut(s)	570
Mva1269I	GAATGC	3 cut(s)	241, 876, 895
MvaI	CCWGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	8 cut(s)	215, 403, 594, 635, 830, 864, 873, 899
NdeII	GATC	2 cut(s)	280, 301
NheI	GCTAGC	2 cut(s)	625, 638
NlaIII	CATG	2 cut(s)	205, 524
NlaIV	GGNNCC	2 cut(s)	427, 857
NmeAIII	GCCGAG	1 cut(s)	468
PaqCI	CACCTGC	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	486
PctI	GAATGC	3 cut(s)	241, 876, 895
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	2 cut(s)	120, 835
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PpuMI	RGGWCCY	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	568
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	2 cut(s)	427, 857
PspPI	GGNCC	2 cut(s)	179, 425
PspPPI	RGGWCCY	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	904
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	33
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SaqAI	TTAA	2 cut(s)	147, 467
SatI	GCNGC	2 cut(s)	119, 834
Sau3AI	GATC	2 cut(s)	280, 301
Sau96I	GGNCC	2 cut(s)	179, 425
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	2 cut(s)	211, 277
SfaNI	GCATC	2 cut(s)	227, 499
SfcI	CTRYAG	2 cut(s)	574, 900
SinI	GGWCC	1 cut(s)	425
Sse9I	AATT	3 cut(s)	44, 111, 124
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	2 cut(s)	794, 833
SspMI	CTAG	4 cut(s)	329, 626, 639, 801
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	568
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	106
TasI	AATT	3 cut(s)	44, 111, 124
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	836
Tru1I	TTAA	2 cut(s)	147, 467
Tru9I	TTAA	2 cut(s)	147, 467
TscAI	CASTG	2 cut(s)	109, 294
TseI	GCWGC	1 cut(s)	118
TspDTI	ATGAA	3 cut(s)	467, 554, 687
TspGWI	ACGGA	1 cut(s)	648
TspRI	CASTG	2 cut(s)	109, 294
Van91I	CCANNNNNTGG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	3 cut(s)	44, 111, 124
XbaI	TCTAGA	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	548
XspI	CTAG	4 cut(s)	329, 626, 639, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.