Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004732

Physical Location & Seq

Genomic Coordinates Forward (+)

56052340 .. 56053260

Gene Structure 921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019727

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCAACAGAGTTCAAAAACTGGTACTGCTTTCAGCATTCTTCGCAATGTTGTCACCACGGAAGGCCCGACTGCCCTTTACAGAGGCATAGCTGCTCCCTTGGCCTCCATCACATTTCAGAGTGCCATGGTTTTCCAAACATATGCCACTCTCTCTCGAGCTCTGGATCCATCGGTTTCTCCTAAAGACCCTCCTTCTTACAAAGGTGTTGCTCTAGGAGGATTTGGGGCTGGTGCTGTGCAGAGTTTGATGATCACCCCAGTAGAACTCGTAAAAATCCGTCTTCAGCTGCAAACCGAGAGCCATAAAGGGCCCATAGATGTTGCGAAAAGCATAATCAAATCAGAAGGGGTAAAAGGAATGTATAGAGGCTTAACCATCACCATGCTAAGGGATGCACCAGCTCATGCTTTCTACTTTTGTACTTATGAGTACATGAAGGAGCAGCTTCACCCGGGATGTAGAAAAAGCGGTGAAGAAAGCTTGCGAGCTACGTTAGTGGCTGGAGGACTAGCAGGAGTAGCTAGCTGGATTAGTTGTTATCCCTTGGATGTCGTAAAAACAAGATTGCAAGCTCAATCGATGTACCCTGTACCAAAATACACTGGAATTGTTGATTGCTTCAGGAAGAGTGTGAGGGAGGACGGGCACGGCGTGCTGTGGCGAGGACTAGGAACTGCGGTTTCCAGAGCGTTTCTTGTGAATGGGGCTATCTTTGCGGCTTATGAGGTTGCTATGAAGGGCCTAGGCAGCAGGGGAAGCGTGGTTCTAGCAGATAATGCAATCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

264

Amino Acids

28.17

Weight (kDa)

9.49

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 55	8e-07	Mitochondrial carrier protein
Mito_carr	PF00153	71 - 150	9.5e-25	Mitochondrial carrier protein
Mito_carr	PF00153	161 - 250	5.2e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79900
fragaria_vesca	FvH4_6g31430 FvH4_6g31440 FvH4_6g31440
malus_domestica	MD09G1211700.v1.1 MD17G1194000.v1.1
prunus_persica	Prupe.3G069700_v2.0.a1
pyrus_communis	pycom09g12890 pycom17g19990
rosa_chinensis	RchiOBHm_Chr2g0138231 RchiOBHm_Chr2g0138241
rosa_laevigata	RLG00000019727 RLG00000019728
rosa_multiflora	Rmu_sc0004576.1_g000030 Rmu_sc0004576.1_g000031 Rmu_sc0006570.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106390 Rroxscaffold_2G00106400
rosa_rugosa	Rorug02G0350000 Rorug02G0350100 Rorug02G0350200
rosa_samantha	Rh2AG396600 Rh2AG396700 Rh2BG409600 Rh2BG409800 Rh2CG383100 Rh2CG383200 Rh2DG418300 Rh2DG418500
rosa_wichuraiana	Rw2G032430 Rw2G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	471, 680, 719
AclWI	GGATC	2 cut(s)	161, 174
AcuI	CTGAAG	2 cut(s)	269, 607
AdeI	CACNNNGTG	1 cut(s)	655
AfaI	GTAC	5 cut(s)	25, 424, 434, 587, 594
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgsI	TTSAA	1 cut(s)	15
AloI	GAACNNNNNNTCC	2 cut(s)	750, 782
Alw21I	GWGCWC	1 cut(s)	163
AlwI	GGATC	2 cut(s)	161, 174
Ama87I	CYCGRG	2 cut(s)	156, 454
AoxI	GGCC	4 cut(s)	64, 102, 311, 742
ApaI	GGGCCC	1 cut(s)	315
ApeKI	GCWGC	4 cut(s)	92, 289, 445, 750
AspA2I	CCTAGG	1 cut(s)	745
AspS9I	GGNCC	4 cut(s)	65, 311, 312, 742
AsuC2I	CCSGG	2 cut(s)	455, 456
AsuHPI	GGTGA	5 cut(s)	46, 247, 373, 443, 485
AsuNHI	GCTAGC	1 cut(s)	524
AvaI	CYCGRG	2 cut(s)	156, 454
AvrII	CCTAGG	1 cut(s)	745
BaeGI	GKGCMC	2 cut(s)	315, 651
BamHI	GGATCC	1 cut(s)	166
BanII	GRGCYC	2 cut(s)	163, 315
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	4 cut(s)	79, 276, 457, 762
BccI	CCATC	3 cut(s)	116, 178, 386
BceAI	ACGGC	1 cut(s)	667
BclI	TGATCA	1 cut(s)	252
BcnI	CCSGG	2 cut(s)	455, 456
BfaI	CTAG	6 cut(s)	215, 512, 525, 671, 746, 770
BisI	GCNGC	5 cut(s)	93, 290, 446, 720, 751
BlnI	CCTAGG	1 cut(s)	745
BlsI	GCNGC	5 cut(s)	94, 291, 447, 721, 752
Bme1390I	CCNGG	2 cut(s)	455, 456
BmeT110I	CYCGRG	2 cut(s)	156, 454
BmgT120I	GGNCC	4 cut(s)	65, 311, 312, 742
BmiI	GGNNCC	2 cut(s)	168, 313
BmrFI	CCNGG	2 cut(s)	455, 456
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	385
BmtI	GCTAGC	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	455, 456
Bsa29I	ATCGAT	1 cut(s)	581
BsaJI	CCNNGG	6 cut(s)	57, 99, 126, 454, 546, 745
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	3 cut(s)	25, 260, 610
Bse3DI	GCAATG	1 cut(s)	52
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	6 cut(s)	57, 99, 126, 454, 546, 745
BseGI	GGATG	3 cut(s)	400, 464, 556
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	52
BseNI	ACTGG	3 cut(s)	25, 260, 610
BseSI	GKGCMC	2 cut(s)	315, 651
BseXI	GCAGC	4 cut(s)	79, 276, 457, 762
BsgI	GTGCAG	1 cut(s)	260
BshFI	GGCC	4 cut(s)	66, 104, 313, 744
BshVI	ATCGAT	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	163
BsiHKCI	CYCGRG	2 cut(s)	156, 454
BsiSI	CCGG	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	4 cut(s)	66, 104, 313, 744
BsoBI	CYCGRG	2 cut(s)	156, 454
Bsp120I	GGGCCC	1 cut(s)	311
Bsp1286I	GDGCHC	3 cut(s)	163, 315, 651
Bsp143I	GATC	2 cut(s)	166, 252
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	3 cut(s)	471, 680, 719
BspANI	GGCC	4 cut(s)	66, 104, 313, 744
BspDI	ATCGAT	1 cut(s)	581
BspLI	GGNNCC	2 cut(s)	168, 313
BspOI	GCTAGC	1 cut(s)	528
BspPI	GGATC	2 cut(s)	161, 174
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	3 cut(s)	25, 260, 610
BssECI	CCNNGG	6 cut(s)	57, 99, 126, 454, 546, 745
BssMI	GATC	2 cut(s)	166, 252
BssT1I	CCWWGG	4 cut(s)	99, 126, 546, 745
Bst6I	CTCTTC	1 cut(s)	623
BstAPI	GCANNNNNTGC	2 cut(s)	655, 779
BstC8I	GCNNGC	5 cut(s)	485, 489, 526, 573, 656
BstDEI	CTNAG	1 cut(s)	389
BstDSI	CCRYGG	2 cut(s)	57, 126
BstF5I	GGATG	3 cut(s)	400, 464, 556
BstKTI	GATC	2 cut(s)	169, 255
BstMBI	GATC	2 cut(s)	166, 252
BstMWI	GCNNNNNNNGC	8 cut(s)	42, 101, 521, 655, 716, 750, 759, 779
BstSCI	CCNGG	2 cut(s)	453, 454
BstSLI	GKGCMC	2 cut(s)	315, 651
BstV1I	GCAGC	4 cut(s)	79, 276, 457, 762
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	581
BsuRI	GGCC	4 cut(s)	66, 104, 313, 744
BsuTUI	ATCGAT	1 cut(s)	581
BtgI	CCRYGG	2 cut(s)	57, 126
BtsCI	GGATG	3 cut(s)	400, 464, 556
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	5 cut(s)	485, 489, 526, 573, 656
Cfr13I	GGNCC	4 cut(s)	65, 311, 312, 742
Cfr9I	CCCGGG	1 cut(s)	454
ClaI	ATCGAT	1 cut(s)	581
Csp6I	GTAC	5 cut(s)	24, 423, 433, 586, 593
CviAII	CATG	4 cut(s)	127, 385, 407, 436
CviQI	GTAC	5 cut(s)	24, 423, 433, 586, 593
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	2 cut(s)	168, 254
DpnII	GATC	2 cut(s)	166, 252
DraIII	CACNNNGTG	1 cut(s)	655
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
Ecl136II	GAGCTC	1 cut(s)	161
Eco130I	CCWWGG	4 cut(s)	99, 126, 546, 745
Eco24I	GRGCYC	2 cut(s)	163, 315
Eco53kI	GAGCTC	1 cut(s)	161
Eco57I	CTGAAG	2 cut(s)	269, 607
Eco88I	CYCGRG	2 cut(s)	156, 454
EcoICRI	GAGCTC	1 cut(s)	161
EcoO109I	RGGNCCY	2 cut(s)	311, 742
EcoT14I	CCWWGG	4 cut(s)	99, 126, 546, 745
EcoT38I	GRGCYC	2 cut(s)	163, 315
ErhI	CCWWGG	4 cut(s)	99, 126, 546, 745
FaeI	CATG	4 cut(s)	130, 388, 410, 439
FatI	CATG	4 cut(s)	126, 384, 406, 435
FauNDI	CATATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	93, 290, 446, 720, 751
FokI	GGATG	3 cut(s)	407, 471, 563
FriOI	GRGCYC	2 cut(s)	163, 315
Fsp4HI	GCNGC	5 cut(s)	93, 290, 446, 720, 751
FspBI	CTAG	6 cut(s)	215, 512, 525, 671, 746, 770
GluI	GCNGC	5 cut(s)	93, 290, 446, 720, 751
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	4 cut(s)	66, 104, 313, 744
HapII	CCGG	1 cut(s)	455
Hin1II	CATG	4 cut(s)	130, 388, 410, 439
HindIII	AAGCTT	1 cut(s)	481
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	5 cut(s)	46, 247, 373, 443, 485
Hpy188I	TCNGA	2 cut(s)	120, 346
Hpy188III	TCNNGA	4 cut(s)	156, 164, 625, 687
HpyAV	CCTTC	5 cut(s)	56, 204, 341, 433, 733
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	6 cut(s)	4, 241, 292, 398, 571, 782
HpyF10VI	GCNNNNNNNGC	8 cut(s)	42, 101, 521, 655, 716, 750, 759, 779
HpyF3I	CTNAG	1 cut(s)	389
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	130, 388, 410, 439
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	166, 252
LmnI	GCTCC	2 cut(s)	100, 442
Lsp1109I	GCAGC	4 cut(s)	79, 276, 457, 762
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	6 cut(s)	215, 512, 525, 671, 746, 770
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	168, 254
MboI	GATC	2 cut(s)	166, 252
MboII	GAAGA	4 cut(s)	32, 275, 488, 640
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	3 cut(s)	163, 315, 651
MluCI	AATT	1 cut(s)	609
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	2 cut(s)	455, 456
Mva1269I	GAATGC	1 cut(s)	36
MwoI	GCNNNNNNNGC	8 cut(s)	42, 101, 521, 655, 716, 750, 759, 779
NciI	CCSGG	2 cut(s)	455, 456
NcoI	CCATGG	1 cut(s)	126
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	2 cut(s)	166, 252
NheI	GCTAGC	1 cut(s)	524
NlaIII	CATG	4 cut(s)	130, 388, 410, 439
NlaIV	GGNNCC	2 cut(s)	168, 313
NmuCI	GTSAC	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 651
PctI	GAATGC	1 cut(s)	36
PkrI	GCNGC	5 cut(s)	94, 291, 447, 721, 752
Psp124BI	GAGCTC	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	168, 313
PspOMI	GGGCCC	1 cut(s)	311
PspPI	GGNCC	4 cut(s)	65, 311, 312, 742
PsuI	RGATCY	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	5 cut(s)	25, 424, 434, 587, 594
RsaNI	GTAC	5 cut(s)	24, 423, 433, 586, 593
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	5 cut(s)	93, 290, 446, 720, 751
Sau3AI	GATC	2 cut(s)	166, 252
Sau96I	GGNCC	4 cut(s)	65, 311, 312, 742
ScrFI	CCNGG	2 cut(s)	455, 456
SduI	GDGCHC	3 cut(s)	163, 315, 651
SfaNI	GCATC	1 cut(s)	385
Sfr274I	CTCGAG	1 cut(s)	156
SlaI	CTCGAG	1 cut(s)	156
SmaI	CCCGGG	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	1 cut(s)	609
SsiI	CCGC	3 cut(s)	471, 680, 719
SspMI	CTAG	6 cut(s)	215, 512, 525, 671, 746, 770
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	2 cut(s)	453, 454
StyI	CCWWGG	4 cut(s)	99, 126, 546, 745
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	2 cut(s)	157, 581
TasI	AATT	1 cut(s)	609
TatI	WGTACW	2 cut(s)	422, 432
TauI	GCSGC	1 cut(s)	722
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	4 cut(s)	92, 289, 445, 750
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	452, 752
TspGWI	ACGGA	2 cut(s)	74, 269
TspMI	CCCGGG	1 cut(s)	454
TspRI	CASTG	1 cut(s)	610
XhoI	CTCGAG	1 cut(s)	156
XmaI	CCCGGG	1 cut(s)	454
XmaJI	CCTAGG	1 cut(s)	745
XspI	CTAG	6 cut(s)	215, 512, 525, 671, 746, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.