Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004732

Physical Location & Seq

Genomic Coordinates Forward (+)

52232980 .. 52237631

Gene Structure 4652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG383200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAATGCTATGGTTTTCCAGTCATACGCCATTCTCTCTCGGGCTCTAGATCCATCAGTGTCCACTAAAGATCCTCCTTCTTACAAAGGTGTTGCTCTAGGAGGGTTTGGGGCAGGTGCTTTGCAGAGTCTAGTCCTCAGCCCAGTAGAACTCATAAAAATCCGGCTTCAGCTGCAAACCAAAACCCAAAAGGGGCCCAGAGAAGTTGCCAAAAGCATTATGAAAGCAGAGGGGCTAAGAGGATTATATAGAGGCCTGGGCATTACTATTCTTAGGGATGCACCAGCTCATGGTTTGTACTTTTCGACTTATGAGTATATGAGAGAGCAGCTTCATCCCAGCTGTAGAAAAACCGGTGAAGAGAGCTTACAAACAATGTTGGTAGCTGGAGGGCTAGCAGGAGTAGCTAGCTGGATTTGTTGTTATCCCTTGGATGTTGTAAAGACCAGATTACAGGCTCAATCTGCGTACCCTCCACCGAAATATACTGGCATAGTTGATTGCTTCAGAAAGAGTGTGAGAGAGGATGGTCTTGCGGTCCTCTGGCGAGGACTAGGAACTGCTGTTTTGAGAGCGTTTCTGGTGAATGGTTCTATTTTTGCGGCGTATGAGATTGCTCTGAGATGCCTTCTCAGCAATGGAAGAATTCCAATAGAGAATGCAATGCCTGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

225

Amino Acids

24.53

Weight (kDa)

9.42

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	32 - 111	3.1e-23	Mitochondrial carrier protein
Mito_carr	PF00153	122 - 211	8.8e-26	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79900
fragaria_vesca	FvH4_6g31430 FvH4_6g31440 FvH4_6g31440
malus_domestica	MD09G1211700.v1.1 MD17G1194000.v1.1
prunus_persica	Prupe.3G069700_v2.0.a1
pyrus_communis	pycom09g12890 pycom17g19990
rosa_chinensis	RchiOBHm_Chr2g0138231 RchiOBHm_Chr2g0138241
rosa_laevigata	RLG00000019727 RLG00000019728
rosa_multiflora	Rmu_sc0004576.1_g000030 Rmu_sc0004576.1_g000031 Rmu_sc0006570.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106390 Rroxscaffold_2G00106400
rosa_rugosa	Rorug02G0350000 Rorug02G0350100 Rorug02G0350200
rosa_samantha	Rh2AG396600 Rh2AG396700 Rh2BG409600 Rh2BG409800 Rh2CG383100 Rh2CG383200 Rh2DG418300 Rh2DG418500
rosa_wichuraiana	Rw2G032430 Rw2G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	290
AciI	CCGC	2 cut(s)	536, 602
AclWI	GGATC	2 cut(s)	44, 65
AcsI	RAATTY	1 cut(s)	645
AcuI	CTGAAG	2 cut(s)	152, 490
AfaI	GTAC	2 cut(s)	299, 470
AfiI	CCNNNNNNNGG	2 cut(s)	192, 290
AgeI	ACCGGT	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	8 cut(s)	172, 287, 331, 342, 366, 386, 407, 411
AluI	AGCT	8 cut(s)	172, 287, 331, 342, 366, 386, 407, 411
AlwI	GGATC	2 cut(s)	44, 65
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	2 cut(s)	194, 253
ApaI	GGGCCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	172, 328
ApoI	RAATTY	1 cut(s)	645
AsiGI	ACCGGT	1 cut(s)	353
AspS9I	GGNCC	3 cut(s)	194, 195, 538
AsuHPI	GGTGA	2 cut(s)	368, 595
AsuNHI	GCTAGC	2 cut(s)	394, 407
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	538
BaeGI	GKGCMC	1 cut(s)	198
BanII	GRGCYC	2 cut(s)	46, 198
BarI	GAAGNNNNNNTAC	2 cut(s)	351, 383
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	159, 340
BccI	CCATC	2 cut(s)	61, 521
BciT130I	CCWGG	1 cut(s)	257
BfaI	CTAG	6 cut(s)	47, 98, 131, 395, 408, 554
BfmI	CTRYAG	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	104
BisI	GCNGC	3 cut(s)	173, 329, 603
BlsI	GCNGC	3 cut(s)	174, 330, 604
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	538
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	3 cut(s)	194, 195, 538
BmiI	GGNNCC	2 cut(s)	195, 196
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	268, 614
BmtI	GCTAGC	2 cut(s)	398, 411
BmuI	ACTGGG	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	256, 429
BsaWI	WCCGGW	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 290
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	19, 143, 493
Bse3DI	GCAATG	2 cut(s)	643, 669
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	256, 429
BseGI	GGATG	4 cut(s)	283, 334, 439, 532
BseLI	CCNNNNNNNGG	2 cut(s)	192, 290
BseMI	GCAATG	2 cut(s)	643, 669
BseMII	CTCAG	3 cut(s)	151, 611, 646
BseNI	ACTGG	3 cut(s)	19, 143, 493
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	159, 340
BseYI	CCCAGC	1 cut(s)	338
BshFI	GGCC	2 cut(s)	196, 255
BshTI	ACCGGT	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	163, 354
BslI	CCNNNNNNNGG	2 cut(s)	192, 290
BsmI	GAATGC	2 cut(s)	10, 664
BsnI	GGCC	2 cut(s)	196, 255
BsoBI	CYCGRG	1 cut(s)	39
Bsp120I	GGGCCC	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	46, 198
Bsp143I	GATC	2 cut(s)	49, 70
BspACI	CCGC	2 cut(s)	536, 602
BspANI	GGCC	2 cut(s)	196, 255
BspCNI	CTCAG	3 cut(s)	150, 612, 645
BspLI	GGNNCC	2 cut(s)	195, 196
BspMI	ACCTGC	1 cut(s)	104
BspOI	GCTAGC	2 cut(s)	398, 411
BspPI	GGATC	2 cut(s)	44, 65
BsrDI	GCAATG	2 cut(s)	643, 669
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	19, 143, 493
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	256, 429
BssMI	GATC	2 cut(s)	49, 70
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	675
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	396, 409
BstDEI	CTNAG	5 cut(s)	137, 236, 272, 620, 632
BstF5I	GGATG	4 cut(s)	283, 334, 439, 532
BstKTI	GATC	2 cut(s)	52, 73
BstMBI	GATC	2 cut(s)	49, 70
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 404, 464, 633
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	159, 340
BstX2I	RGATCY	2 cut(s)	49, 70
BstYI	RGATCY	2 cut(s)	49, 70
BsuRI	GGCC	2 cut(s)	196, 255
BtsCI	GGATG	4 cut(s)	283, 334, 439, 532
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	396, 409
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	3 cut(s)	194, 195, 538
Csp6I	GTAC	2 cut(s)	298, 469
CspAI	ACCGGT	1 cut(s)	353
CviAII	CATG	1 cut(s)	290
CviQI	GTAC	2 cut(s)	298, 469
DdeI	CTNAG	5 cut(s)	137, 236, 272, 620, 632
DpnI	GATC	2 cut(s)	51, 72
DpnII	GATC	2 cut(s)	49, 70
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	429
Eco147I	AGGCCT	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	46, 198
Eco47I	GGWCC	1 cut(s)	538
Eco57I	CTGAAG	2 cut(s)	152, 490
Eco88I	CYCGRG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	46, 198
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	1 cut(s)	293
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	173, 329, 603
FokI	GGATG	4 cut(s)	290, 321, 446, 539
FriOI	GRGCYC	2 cut(s)	46, 198
Fsp4HI	GCNGC	3 cut(s)	173, 329, 603
FspBI	CTAG	6 cut(s)	47, 98, 131, 395, 408, 554
GluI	GCNGC	3 cut(s)	173, 329, 603
GsaI	CCCAGC	1 cut(s)	342
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	196, 255
HapII	CCGG	2 cut(s)	163, 354
Hin1II	CATG	1 cut(s)	293
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	163, 354
HphI	GGTGA	2 cut(s)	368, 595
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	509, 621
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	87, 638
HpyCH4III	ACNGT	1 cut(s)	675
HpyCH4V	TGCA	4 cut(s)	124, 175, 281, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 404, 464, 633
HpyF3I	CTNAG	5 cut(s)	137, 236, 272, 620, 632
Hsp92II	CATG	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	49, 70
Lsp1109I	GCAGC	2 cut(s)	159, 340
LweI	GCATC	2 cut(s)	268, 614
MaeI	CTAG	6 cut(s)	47, 98, 131, 395, 408, 554
MalI	GATC	2 cut(s)	51, 72
MboI	GATC	2 cut(s)	49, 70
MboII	GAAGA	2 cut(s)	371, 654
MflI	RGATCY	2 cut(s)	49, 70
MhlI	GDGCHC	2 cut(s)	46, 198
MluCI	AATT	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	136
MspA1I	CMGCKG	2 cut(s)	172, 342
MspI	CCGG	2 cut(s)	163, 354
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	2 cut(s)	10, 664
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	4 cut(s)	172, 404, 464, 633
NdeII	GATC	2 cut(s)	49, 70
NheI	GCTAGC	2 cut(s)	394, 407
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	2 cut(s)	195, 196
PaqCI	CACCTGC	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	255
PctI	GAATGC	2 cut(s)	10, 664
PflMI	CCANNNNNTGG	1 cut(s)	290
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	174, 330, 604
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	195, 196
PspOMI	GGGCCC	1 cut(s)	194
PspPI	GGNCC	3 cut(s)	194, 195, 538
PsuI	RGATCY	2 cut(s)	49, 70
PvuII	CAGCTG	2 cut(s)	172, 342
RsaI	GTAC	2 cut(s)	299, 470
RsaNI	GTAC	2 cut(s)	298, 469
SatI	GCNGC	3 cut(s)	173, 329, 603
Sau3AI	GATC	2 cut(s)	49, 70
Sau96I	GGNCC	3 cut(s)	194, 195, 538
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	46, 198
SfaNI	GCATC	2 cut(s)	268, 614
SfcI	CTRYAG	1 cut(s)	343
SinI	GGWCC	1 cut(s)	538
Sse9I	AATT	1 cut(s)	645
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	2 cut(s)	536, 602
SspMI	CTAG	6 cut(s)	47, 98, 131, 395, 408, 554
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	675
TaqI	TCGA	1 cut(s)	305
TasI	AATT	1 cut(s)	645
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	605
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	2 cut(s)	172, 328
TspDTI	ATGAA	3 cut(s)	17, 236, 323
TspRI	CASTG	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	1 cut(s)	645
XbaI	TCTAGA	1 cut(s)	46
XspI	CTAG	6 cut(s)	47, 98, 131, 395, 408, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.