FvH4_6g31430

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004732
Physical Location & Seq
Forward (+)
24566245 .. 24567793
1549 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31430.t1

Sequence Viewer

Length: 900 bp
ATGGAAGACTTTGTTGCTAGCAGTTGGGGAAGAGAGTTTGTAGCTGGAGGGTTTGGAGGCATTGCTGGTATAATCTCAGGGCACCCACTTGACACTATTAGAATCATGCAACAAAGTTCAAAAACAGGTTCTGCTATCAGCATTCTTCGCAATGTCGTCGCCACACAAGGCCCAACTGCCCTCTACAGAGGCATAACTGCCCCCTTGGCCTCCATCACATTTCAGAGTGCCATTGTTTTCCAGACATATGCTATTCTCTCTCGAGCTCTGGATCCATCATCGGTTTCTCCTAATGACCCTCCTTCTTACGAAGGTGTTGCTCTAGGAGGATTTGGGGTTGGTGCTGTGCAGAGTTTGATGATCAGCCCAGTAGAACTTGTGAAAATCCGTCTTCAGCTGCAAACCGGGACACAAAAAGGCCCCATAGATGTTGCCAAGAGCATAATGAAAGCAGAAGGGCTAAAAGGAATGTATAGAGGCTTAACCATCACCATGCTAAGGGATGCACCCGCTCATGCTTTCTACTTTTCTACTTATGAGTACATGAGAGAGCAGCTTCACCCGGGATGTAGAAAAACCGGCAAAGAGAACTTGCGAGCTACTTTGGTGGCTGGAGGACTAGCAGGAGTAGCTAGCTGGCTTAGTTGTTATCCCTTGGATGTTGTAAAAACAAGATTGCAGGCTCAATCAATGTCCCCTCTACCAAAATACACAGGAATTGTTGATTGCTTCAGGAAAAGTGTGAGGGAGGACGGGCACGGCGTGCTGTGGCGAGGACTAGGAACTGCGGTTTCTAGAGCGTTTCTTGTTAATGGGGTTATCTTTGCAGCTTATGAGCTTGCTTTGAAGTGCATAGGCAGCAGGGGAAGTGTGGTTCTAGCAGATAACGCAGTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

300

Amino Acids

31.85

Weight (kDa)

9.47

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 7 - 90 7.9e-14 Mitochondrial carrier protein
Mito_carr PF00153 107 - 186 1.9e-22 Mitochondrial carrier protein
Mito_carr PF00153 197 - 283 2.5e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AccBSI CCGCTC 1 cut(s) 512
AciI CCGC 2 cut(s) 510, 788
AclWI GGATC 2 cut(s) 266, 279
AcuI CTGAAG 2 cut(s) 377, 715
AdeI CACNNNGTG 1 cut(s) 763
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 1 cut(s) 498
AgsI TTSAA 2 cut(s) 120, 847
AloI GAACNNNNNNTCC 2 cut(s) 858, 890
AluBI AGCT 9 cut(s) 44, 266, 397, 556, 599, 632, 636, 830, 838
AluI AGCT 9 cut(s) 44, 266, 397, 556, 599, 632, 636, 830, 838
Alw21I GWGCWC 1 cut(s) 268
AlwI GGATC 2 cut(s) 266, 279
AlwNI CAGNNNCTG 1 cut(s) 131
Ama87I CYCGRG 2 cut(s) 261, 562
AoxI GGCC 3 cut(s) 169, 207, 418
ApeKI GCWGC 4 cut(s) 397, 553, 827, 858
AspS9I GGNCC 2 cut(s) 170, 419
AsuC2I CCSGG 3 cut(s) 406, 563, 564
AsuHPI GGTGA 2 cut(s) 481, 551
AsuNHI GCTAGC 2 cut(s) 17, 632
AvaI CYCGRG 2 cut(s) 261, 562
BaeGI GKGCMC 2 cut(s) 84, 759
BamHI GGATCC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 268
BbsI GAAGAC 2 cut(s) 12, 383
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 4 cut(s) 384, 565, 839, 870
BccI CCATC 3 cut(s) 221, 283, 494
BceAI ACGGC 1 cut(s) 775
BcgI CGANNNNNNTGC 4 cut(s) 139, 173, 299, 333
BclI TGATCA 1 cut(s) 360
BcnI CCSGG 3 cut(s) 406, 563, 564
BfaI CTAG 7 cut(s) 18, 323, 620, 633, 779, 795, 878
BfmI CTRYAG 1 cut(s) 184
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 4 cut(s) 398, 554, 828, 859
BlsI GCNGC 4 cut(s) 399, 555, 829, 860
Bme1390I CCNGG 3 cut(s) 406, 563, 564
BmeT110I CYCGRG 2 cut(s) 261, 562
BmgT120I GGNCC 2 cut(s) 170, 419
BmiI GGNNCC 3 cut(s) 83, 273, 421
BmrFI CCNGG 3 cut(s) 406, 563, 564
BmrI ACTGGG 1 cut(s) 362
BmsI GCATC 1 cut(s) 493
BmtI GCTAGC 2 cut(s) 21, 636
BmuI ACTGGG 1 cut(s) 362
BpiI GAAGAC 2 cut(s) 12, 383
BpmI CTGGAG 2 cut(s) 66, 633
Bpu10I CCTNAGC 1 cut(s) 497
BpuMI CCSGG 3 cut(s) 406, 563, 564
BsaJI CCNNGG 3 cut(s) 204, 562, 654
Bsc4I CCNNNNNNNGG 1 cut(s) 498
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 1 cut(s) 368
Bse3DI GCAATG 2 cut(s) 60, 157
BseDI CCNNGG 3 cut(s) 204, 562, 654
BseGI GGATG 3 cut(s) 508, 572, 664
BseLI CCNNNNNNNGG 1 cut(s) 498
BseMI GCAATG 2 cut(s) 60, 157
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 368
BseSI GKGCMC 2 cut(s) 84, 759
BseXI GCAGC 4 cut(s) 384, 565, 839, 870
BsgI GTGCAG 1 cut(s) 368
BshFI GGCC 3 cut(s) 171, 209, 420
BshNI GGYRCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 2 cut(s) 261, 562
BsiSI CCGG 3 cut(s) 405, 563, 579
BslFI GGGAC 2 cut(s) 421, 679
BslI CCNNNNNNNGG 1 cut(s) 498
BsmFI GGGAC 2 cut(s) 421, 679
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 3 cut(s) 171, 209, 420
BsoBI CYCGRG 2 cut(s) 261, 562
Bsp1286I GDGCHC 3 cut(s) 84, 268, 759
Bsp143I GATC 2 cut(s) 271, 360
BspACI CCGC 2 cut(s) 510, 788
BspANI GGCC 3 cut(s) 171, 209, 420
BspCNI CTCAG 1 cut(s) 89
BspLI GGNNCC 3 cut(s) 83, 273, 421
BspOI GCTAGC 2 cut(s) 21, 636
BspPI GGATC 2 cut(s) 266, 279
BspT107I GGYRCC 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 512
BsrDI GCAATG 2 cut(s) 60, 157
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 3 cut(s) 204, 562, 654
BssMI GATC 2 cut(s) 271, 360
BssT1I CCWWGG 2 cut(s) 204, 654
Bst6I CTCTTC 1 cut(s) 25
BstAPI GCANNNNNTGC 1 cut(s) 763
BstC8I GCNNGC 7 cut(s) 19, 597, 634, 638, 681, 764, 840
BstDEI CTNAG 3 cut(s) 76, 497, 641
BstF5I GGATG 3 cut(s) 508, 572, 664
BstKTI GATC 2 cut(s) 274, 363
BstMBI GATC 2 cut(s) 271, 360
BstMWI GCNNNNNNNGC 6 cut(s) 147, 206, 629, 763, 858, 887
BstSCI CCNGG 3 cut(s) 404, 561, 562
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 2 cut(s) 84, 759
BstV1I GCAGC 4 cut(s) 384, 565, 839, 870
BstV2I GAAGAC 2 cut(s) 12, 383
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 3 cut(s) 171, 209, 420
BtsCI GGATG 3 cut(s) 508, 572, 664
Cac8I GCNNGC 7 cut(s) 19, 597, 634, 638, 681, 764, 840
CaiI CAGNNNCTG 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 2 cut(s) 170, 419
Cfr9I CCCGGG 1 cut(s) 562
Csp6I GTAC 1 cut(s) 541
CviAII CATG 4 cut(s) 106, 493, 515, 544
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 3 cut(s) 76, 497, 641
DpnI GATC 2 cut(s) 273, 362
DpnII GATC 2 cut(s) 271, 360
DraIII CACNNNGTG 1 cut(s) 763
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 204, 654
Eco24I GRGCYC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 266
Eco57I CTGAAG 2 cut(s) 377, 715
Eco88I CYCGRG 2 cut(s) 261, 562
EcoICRI GAGCTC 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 419
EcoT14I CCWWGG 2 cut(s) 204, 654
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 2 cut(s) 204, 654
FaeI CATG 4 cut(s) 109, 496, 518, 547
FaqI GGGAC 2 cut(s) 421, 679
FatI CATG 4 cut(s) 105, 492, 514, 543
FauI CCCGC 1 cut(s) 517
FauNDI CATATG 1 cut(s) 247
FbaI TGATCA 1 cut(s) 360
Fnu4HI GCNGC 4 cut(s) 398, 554, 828, 859
FokI GGATG 3 cut(s) 515, 579, 671
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 4 cut(s) 398, 554, 828, 859
FspBI CTAG 7 cut(s) 18, 323, 620, 633, 779, 795, 878
GluI GCNGC 4 cut(s) 398, 554, 828, 859
GsuI CTGGAG 2 cut(s) 66, 633
HaeIII GGCC 3 cut(s) 171, 209, 420
HapII CCGG 3 cut(s) 405, 563, 579
Hin1II CATG 4 cut(s) 109, 496, 518, 547
HinfI GANTC 1 cut(s) 102
HpaII CCGG 3 cut(s) 405, 563, 579
HphI GGTGA 2 cut(s) 481, 551
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 5 cut(s) 241, 261, 269, 733, 795
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 305, 312, 449
HpyCH4V TGCA 7 cut(s) 109, 349, 400, 506, 679, 827, 852
HpyF10VI GCNNNNNNNGC 6 cut(s) 147, 206, 629, 763, 858, 887
HpyF3I CTNAG 3 cut(s) 76, 497, 641
Hsp92II CATG 4 cut(s) 109, 496, 518, 547
Ksp22I TGATCA 1 cut(s) 360
Kzo9I GATC 2 cut(s) 271, 360
Lsp1109I GCAGC 4 cut(s) 384, 565, 839, 870
LweI GCATC 1 cut(s) 493
MaeI CTAG 7 cut(s) 18, 323, 620, 633, 779, 795, 878
MalI GATC 2 cut(s) 273, 362
MbiI CCGCTC 1 cut(s) 512
MboI GATC 2 cut(s) 271, 360
MboII GAAGA 4 cut(s) 17, 42, 137, 383
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 3 cut(s) 84, 268, 759
MluCI AATT 1 cut(s) 717
MseI TTAA 2 cut(s) 482, 810
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 397
MspI CCGG 3 cut(s) 405, 563, 579
MspR9I CCNGG 3 cut(s) 406, 563, 564
Mva1269I GAATGC 1 cut(s) 141
MwoI GCNNNNNNNGC 6 cut(s) 147, 206, 629, 763, 858, 887
NciI CCSGG 3 cut(s) 406, 563, 564
NdeI CATATG 1 cut(s) 247
NdeII GATC 2 cut(s) 271, 360
NheI GCTAGC 2 cut(s) 17, 632
NlaIII CATG 4 cut(s) 109, 496, 518, 547
NlaIV GGNNCC 3 cut(s) 83, 273, 421
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 759
PctI GAATGC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 4 cut(s) 399, 555, 829, 860
Psp124BI GAGCTC 1 cut(s) 268
PspN4I GGNNCC 3 cut(s) 83, 273, 421
PspPI GGNCC 2 cut(s) 170, 419
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 397
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 268
SaqAI TTAA 2 cut(s) 482, 810
SatI GCNGC 4 cut(s) 398, 554, 828, 859
Sau3AI GATC 2 cut(s) 271, 360
Sau96I GGNCC 2 cut(s) 170, 419
ScrFI CCNGG 3 cut(s) 406, 563, 564
SduI GDGCHC 3 cut(s) 84, 268, 759
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 184
Sfr274I CTCGAG 1 cut(s) 261
SlaI CTCGAG 1 cut(s) 261
SmaI CCCGGG 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 1 cut(s) 717
SsiI CCGC 2 cut(s) 510, 788
SspMI CTAG 7 cut(s) 18, 323, 620, 633, 779, 795, 878
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 3 cut(s) 404, 561, 562
StyI CCWWGG 2 cut(s) 204, 654
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 717
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 2 cut(s) 482, 810
Tru9I TTAA 2 cut(s) 482, 810
TseI GCWGC 4 cut(s) 397, 553, 827, 858
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 1 cut(s) 377
TspMI CCCGGG 1 cut(s) 562
XbaI TCTAGA 1 cut(s) 794
XhoI CTCGAG 1 cut(s) 261
XmaI CCCGGG 1 cut(s) 562
XspI CTAG 7 cut(s) 18, 323, 620, 633, 779, 795, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.