MD17G1194000.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0004732
Physical Location & Seq
Reverse (-)
23272164 .. 23274857
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1194000.v1.1.491

Sequence Viewer

Length: 897 bp
ATGGATTTCTGGCCCGAGTTTCTTGCGAGCAGTTGGGGAAGAGAGTTTGTGGCAGGAGGGGTTGGAGGGATGGCTGGTGTTGTTTCTGGTTATCCGCTCGACACTCTCCGGATCTTGCAACAGAATTCGCATTCGGCATCGGCCTTCAGCATCCTTCGCAATGTTGTCTCTGCTGAAGGCCCCGTTGCCCTTTACAGGGGCATGACTGCTCCCCTGGCAGCCGTTACCTTCCAGAATGCCATAGTTTTCCAGGTATACTCCATCCTCTCCCGAACCTGCGATCCTTCCGTTTCCACCAAAGACCCTCCTTCATACAAAGGTGTTTATCTAGGGGGAATTGGCACAGGTGCTATACAGAGCCTAATACTCAGCCCTGTAGAACTCGTAAAAATCCGGCTTCAACTCCAAACCGATGCAAAATCGAAACCTCATCAGCTGCAATCCCCAAAAGGCCCTATAGATGTTGCCAAAAGCATTATGAGAGCAGAAGGCTTAAGGGGAATATATAGAGGACTTTCTATTACTGTCCTGAGGGATGCACCGTCGTTCGGTTTCTACTTCTGGACTTATGAGTACATGAGAGAGAAGCTTCACCCGGGCTGCAGAAGGACCGGGGAAGAGAGCTTGCAAACAATGCTGGTGGCGGGAGGGCTTGCAGGAGTAGCCAGCTGGATTTGTTGTTATCCCCTAGACGTTGTGAAAACGAGATTGCAGGCTCAGGTTGTGTCTCAGTACCCGCCCAGATATTCCGGCATCGTTGATTGCTTTCAGAAGAGCGTTAGAGAGGATGGTTATGGTGTGCTCTGGCGTGGACTAGGAACTGCGGTTTCTAGAGCGTTTCTGGTGAATGGGGCAGTTTTTGCTGCTTATGAGATTGCTCTGAGGTGCCTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

299

Amino Acids

32.48

Weight (kDa)

9.2

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 11 - 91 8e-14 Mitochondrial carrier protein
Mito_carr PF00153 109 - 197 1.6e-21 Mitochondrial carrier protein
Mito_carr PF00153 208 - 295 1.7e-23 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 885
AccBSI CCGCTC 1 cut(s) 97
AccI GTMKAC 1 cut(s) 255
AccIII TCCGGA 1 cut(s) 108
AciI CCGC 4 cut(s) 95, 644, 737, 824
AclWI GGATC 2 cut(s) 119, 275
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 2 cut(s) 130, 195
AfaI GTAC 2 cut(s) 575, 734
AfiI CCNNNNNNNGG 3 cut(s) 195, 196, 548
AflII CTTAAG 1 cut(s) 493
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 2 cut(s) 213, 249
AloI GAACNNNNNNTCC 2 cut(s) 265, 297
AluBI AGCT 4 cut(s) 436, 589, 624, 669
AluI AGCT 4 cut(s) 436, 589, 624, 669
Alw21I GWGCWC 1 cut(s) 804
Alw26I GTCTC 2 cut(s) 172, 732
AlwI GGATC 2 cut(s) 119, 275
Ama87I CYCGRG 2 cut(s) 14, 595
Aor13HI TCCGGA 1 cut(s) 108
AoxI GGCC 4 cut(s) 11, 141, 178, 451
ApeKI GCWGC 4 cut(s) 218, 436, 600, 863
ApoI RAATTY 1 cut(s) 124
AspS9I GGNCC 4 cut(s) 12, 179, 452, 609
AsuC2I CCSGG 3 cut(s) 596, 597, 613
AsuHPI GGTGA 2 cut(s) 584, 856
AvaI CYCGRG 2 cut(s) 14, 595
AvaII GGWCC 1 cut(s) 609
AxyI CCTNAGG 1 cut(s) 530
BanI GGYRCC 1 cut(s) 885
Bbv12I GWGCWC 1 cut(s) 804
BbvI GCAGC 4 cut(s) 230, 423, 587, 850
BccI CCATC 3 cut(s) 64, 269, 782
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 2 cut(s) 215, 251
BcnI CCSGG 3 cut(s) 596, 597, 613
BcoDI GTCTC 2 cut(s) 172, 732
BfaI CTAG 5 cut(s) 329, 689, 815, 831, 895
BfmI CTRYAG 3 cut(s) 375, 456, 601
BfrI CTTAAG 1 cut(s) 493
BfuAI ACCTGC 1 cut(s) 284
BisI GCNGC 4 cut(s) 219, 437, 601, 864
BlsI GCNGC 4 cut(s) 220, 438, 602, 865
Bme1390I CCNGG 5 cut(s) 215, 251, 596, 597, 613
Bme18I GGWCC 1 cut(s) 609
BmeT110I CYCGRG 2 cut(s) 14, 595
BmgT120I GGNCC 4 cut(s) 12, 179, 452, 609
BmiI GGNNCC 2 cut(s) 181, 887
BmrFI CCNGG 5 cut(s) 215, 251, 596, 597, 613
BmsI GCATC 5 cut(s) 146, 159, 403, 526, 762
Bpu10I CCTNAGC 1 cut(s) 717
BpuMI CCSGG 3 cut(s) 596, 597, 613
BsaJI CCNNGG 3 cut(s) 213, 595, 612
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 196, 548
Bse21I CCTNAGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 166
BseAI TCCGGA 1 cut(s) 108
BseBI CCWGG 2 cut(s) 215, 251
BseDI CCNNGG 3 cut(s) 213, 595, 612
BseGI GGATG 5 cut(s) 75, 150, 261, 541, 793
BseLI CCNNNNNNNGG 3 cut(s) 195, 196, 548
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 5 cut(s) 382, 521, 731, 743, 872
BseXI GCAGC 4 cut(s) 230, 423, 587, 850
BshFI GGCC 4 cut(s) 13, 143, 180, 453
BshNI GGYRCC 1 cut(s) 885
BsiHKAI GWGCWC 1 cut(s) 804
BsiHKCI CYCGRG 2 cut(s) 14, 595
BsiSI CCGG 5 cut(s) 109, 394, 596, 612, 750
BslI CCNNNNNNNGG 3 cut(s) 195, 196, 548
BsmAI GTCTC 2 cut(s) 172, 732
BsmI GAATGC 2 cut(s) 130, 241
BsnI GGCC 4 cut(s) 13, 143, 180, 453
BsoBI CYCGRG 2 cut(s) 14, 595
Bsp1286I GDGCHC 1 cut(s) 804
Bsp13I TCCGGA 1 cut(s) 108
Bsp143I GATC 2 cut(s) 111, 280
BspACI CCGC 4 cut(s) 95, 644, 737, 824
BspANI GGCC 4 cut(s) 13, 143, 180, 453
BspCNI CTCAG 5 cut(s) 381, 522, 730, 742, 873
BspEI TCCGGA 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 181, 887
BspMAI CTGCAG 1 cut(s) 605
BspMI ACCTGC 1 cut(s) 284
BspPI GGATC 2 cut(s) 119, 275
BspQI GCTCTTC 1 cut(s) 767
BspT107I GGYRCC 1 cut(s) 885
BspTI CTTAAG 1 cut(s) 493
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 213, 595, 612
BssMI GATC 2 cut(s) 111, 280
BssNAI GTATAC 1 cut(s) 256
Bst1107I GTATAC 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 215, 251
Bst4CI ACNGT 2 cut(s) 526, 543
Bst6I CTCTTC 3 cut(s) 34, 612, 767
BstAFI CTTAAG 1 cut(s) 493
BstAPI GCANNNNNTGC 2 cut(s) 634, 860
BstC8I GCNNGC 5 cut(s) 28, 626, 654, 667, 714
BstDEI CTNAG 5 cut(s) 368, 530, 717, 729, 881
BstF5I GGATG 5 cut(s) 75, 150, 261, 541, 793
BstKTI GATC 2 cut(s) 114, 283
BstMAI GTCTC 2 cut(s) 172, 732
BstMBI GATC 2 cut(s) 111, 280
BstMWI GCNNNNNNNGC 5 cut(s) 156, 215, 634, 662, 860
BstNI CCWGG 2 cut(s) 215, 251
BstSCI CCNGG 5 cut(s) 213, 249, 594, 595, 611
BstSFI CTRYAG 3 cut(s) 375, 456, 601
BstV1I GCAGC 4 cut(s) 230, 423, 587, 850
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BstZ17I GTATAC 1 cut(s) 256
Bsu36I CCTNAGG 1 cut(s) 530
BsuRI GGCC 4 cut(s) 13, 143, 180, 453
BtsCI GGATG 5 cut(s) 75, 150, 261, 541, 793
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 5 cut(s) 28, 626, 654, 667, 714
Cfr13I GGNCC 4 cut(s) 12, 179, 452, 609
Cfr9I CCCGGG 1 cut(s) 595
Csp6I GTAC 2 cut(s) 574, 733
CspCI CAANNNNNGTGG 2 cut(s) 621, 656
CviAII CATG 2 cut(s) 202, 577
CviQI GTAC 2 cut(s) 574, 733
DdeI CTNAG 5 cut(s) 368, 530, 717, 729, 881
DpnI GATC 2 cut(s) 113, 282
DpnII GATC 2 cut(s) 111, 280
Eam1104I CTCTTC 3 cut(s) 34, 612, 767
EarI CTCTTC 3 cut(s) 34, 612, 767
Eco47I GGWCC 1 cut(s) 609
Eco57I CTGAAG 2 cut(s) 130, 195
Eco81I CCTNAGG 1 cut(s) 530
Eco88I CYCGRG 2 cut(s) 14, 595
EcoO109I RGGNCCY 2 cut(s) 179, 452
EcoRI GAATTC 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 213, 249
FaeI CATG 2 cut(s) 205, 580
FatI CATG 2 cut(s) 201, 576
FauI CCCGC 2 cut(s) 637, 744
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 4 cut(s) 219, 437, 601, 864
FokI GGATG 5 cut(s) 82, 137, 248, 548, 800
Fsp4HI GCNGC 4 cut(s) 219, 437, 601, 864
FspBI CTAG 5 cut(s) 329, 689, 815, 831, 895
GluI GCNGC 4 cut(s) 219, 437, 601, 864
HaeIII GGCC 4 cut(s) 13, 143, 180, 453
HapII CCGG 5 cut(s) 109, 394, 596, 612, 750
Hin1II CATG 2 cut(s) 205, 580
HindIII AAGCTT 1 cut(s) 587
HpaII CCGG 5 cut(s) 109, 394, 596, 612, 750
HphI GGTGA 2 cut(s) 584, 856
Hpy166II GTNNAC 2 cut(s) 256, 812
Hpy188I TCNGA 2 cut(s) 771, 882
Hpy188III TCNNGA 6 cut(s) 109, 232, 270, 529, 562, 831
Hpy8I GTNNAC 2 cut(s) 256, 812
Hpy99I CGWCG 1 cut(s) 547
HpyAV CCTTC 8 cut(s) 154, 164, 170, 238, 294, 318, 482, 600
HpyCH4III ACNGT 2 cut(s) 526, 543
HpyCH4IV ACGT 1 cut(s) 693
HpyCH4V TGCA 8 cut(s) 118, 416, 439, 539, 603, 628, 656, 712
HpyF10VI GCNNNNNNNGC 5 cut(s) 156, 215, 634, 662, 860
HpyF3I CTNAG 5 cut(s) 368, 530, 717, 729, 881
HpySE526I ACGT 1 cut(s) 693
Hsp92II CATG 2 cut(s) 205, 580
Kpn2I TCCGGA 1 cut(s) 108
Kzo9I GATC 2 cut(s) 111, 280
LguI GCTCTTC 1 cut(s) 767
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 4 cut(s) 230, 423, 587, 850
LweI GCATC 5 cut(s) 146, 159, 403, 526, 762
MaeI CTAG 5 cut(s) 329, 689, 815, 831, 895
MaeII ACGT 1 cut(s) 693
MaeIII GTNAC 1 cut(s) 223
MalI GATC 2 cut(s) 113, 282
MbiI CCGCTC 1 cut(s) 97
MboI GATC 2 cut(s) 111, 280
MboII GAAGA 3 cut(s) 51, 629, 784
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 804
MluCI AATT 2 cut(s) 124, 336
MmeI TCCRAC 1 cut(s) 43
MroI TCCGGA 1 cut(s) 108
MseI TTAA 1 cut(s) 494
MspA1I CMGCKG 2 cut(s) 436, 669
MspCI CTTAAG 1 cut(s) 493
MspI CCGG 5 cut(s) 109, 394, 596, 612, 750
MspR9I CCNGG 5 cut(s) 215, 251, 596, 597, 613
Mva1269I GAATGC 2 cut(s) 130, 241
MvaI CCWGG 2 cut(s) 215, 251
MwoI GCNNNNNNNGC 5 cut(s) 156, 215, 634, 662, 860
NciI CCSGG 3 cut(s) 596, 597, 613
NdeII GATC 2 cut(s) 111, 280
NlaIII CATG 2 cut(s) 205, 580
NlaIV GGNNCC 2 cut(s) 181, 887
PciSI GCTCTTC 1 cut(s) 767
PctI GAATGC 2 cut(s) 130, 241
PkrI GCNGC 4 cut(s) 220, 438, 602, 865
Psp6I CCWGG 2 cut(s) 213, 249
PspGI CCWGG 2 cut(s) 213, 249
PspN4I GGNNCC 2 cut(s) 181, 887
PspPI GGNCC 4 cut(s) 12, 179, 452, 609
PstI CTGCAG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 111
PvuII CAGCTG 2 cut(s) 436, 669
RsaI GTAC 2 cut(s) 575, 734
RsaNI GTAC 2 cut(s) 574, 733
SapI GCTCTTC 1 cut(s) 767
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 4 cut(s) 219, 437, 601, 864
Sau3AI GATC 2 cut(s) 111, 280
Sau96I GGNCC 4 cut(s) 12, 179, 452, 609
ScrFI CCNGG 5 cut(s) 215, 251, 596, 597, 613
SduI GDGCHC 1 cut(s) 804
SfaNI GCATC 5 cut(s) 146, 159, 403, 526, 762
SfcI CTRYAG 3 cut(s) 375, 456, 601
SinI GGWCC 1 cut(s) 609
SmaI CCCGGG 1 cut(s) 597
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 2 cut(s) 124, 336
SsiI CCGC 4 cut(s) 95, 644, 737, 824
SspMI CTAG 5 cut(s) 329, 689, 815, 831, 895
StyD4I CCNGG 5 cut(s) 213, 249, 594, 595, 611
TaaI ACNGT 2 cut(s) 526, 543
TaiI ACGT 1 cut(s) 696
TaqI TCGA 2 cut(s) 99, 422
TasI AATT 2 cut(s) 124, 336
TatI WGTACW 1 cut(s) 573
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TseI GCWGC 4 cut(s) 218, 436, 600, 863
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 277
TspMI CCCGGG 1 cut(s) 595
Vha464I CTTAAG 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 609
XapI RAATTY 1 cut(s) 124
XbaI TCTAGA 1 cut(s) 830
XmaI CCCGGG 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 5 cut(s) 329, 689, 815, 831, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.