Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004732

Physical Location & Seq

Genomic Coordinates Reverse (-)

11411105 .. 11416073

Gene Structure 4969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGATTTCTGGCCAGAGTTTCTTGCGAGCAGTTGGGGAAGAGAGTTTGTGGCAGGAGGGGTTGGAGGGATGGCTGGTGTGGTCTCTGGTTATCCCCTCGACACTCTCCGGGTCTTGCAACAGAGTTCGCCTTCGGGCTCGGCCTTCAGCATCCTCCGTAACGTGGTCTGCGCTGAAGGCCCAATTGCCCTCTACAGAGGCATGGCTGCTCCCATGGCAGCTGTCACCTTCCAGAATGCCATGGTTTTCCAGGTATACGCTATCCTCTCCCGAACCTGCGATCCTTCTGTTTCCGCCAAAGACCCTCCTTCGTACAAAGGTGTTGCTCTAGGAGGATTTGGCACAGGTGCTATACAGAGCCTACTACTCAGTCCCGTAGAACTTGTAAAAATCCGACTTCAACTCCAACGTGATGCAAAATCAAAACCCCATCAGCTGCAATCTCACAACGGTCCTGTAGATGTCGCCAAAAGCATAATGAGAGCAGAAGGCTTAAGGGGAATGTATAGAGGACTTTTTATTACTGTCCTTAGGGAAGCGCCGTCCTATGGCTTATACTTCTGGACTTACGAGTACATAAGAGAGAAGCTTCACCCGGGCTGCAGAAAGACCGGCGAAGAGAGCTTGCAAACAATGCTGGTGGCAGGAGGGCTAGCGGGAGTTGCCAGCTGGATTTGTTGTTATCCCTTAGATGTTGTGAAAACGAGATTGCAGGCTCAAGCTCCATCTCAGTACCTTCCACCCAGATATTCCGGCATTGCTGATTGCTTTCGGAAGAGTGTGAGAGAGGATGGTTATGGGGTACTATGGCGAGGATTAGGAACTGCGGTTTCTAGAGCATTTCTGGTGAATGGGGCAATTTTTGCTGCTTATGAGATTGCTCTAAGGTGCCTATTCAGCAACAGAAGTGGAGCCATTCAGACAGAGAAGATGCAATCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

315

Amino Acids

34.12

Weight (kDa)

9.31

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79900
fragaria_vesca	FvH4_6g31430 FvH4_6g31440 FvH4_6g31440
malus_domestica	MD09G1211700.v1.1 MD17G1194000.v1.1
prunus_persica	Prupe.3G069700_v2.0.a1
pyrus_communis	pycom09g12890 pycom17g19990
rosa_chinensis	RchiOBHm_Chr2g0138231 RchiOBHm_Chr2g0138241
rosa_laevigata	RLG00000019727 RLG00000019728
rosa_multiflora	Rmu_sc0004576.1_g000030 Rmu_sc0004576.1_g000031 Rmu_sc0006570.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106390 Rroxscaffold_2G00106400
rosa_rugosa	Rorug02G0350000 Rorug02G0350100 Rorug02G0350200
rosa_samantha	Rh2AG396600 Rh2AG396700 Rh2BG409600 Rh2BG409800 Rh2CG383100 Rh2CG383200 Rh2DG418300 Rh2DG418500
rosa_wichuraiana	Rw2G032430 Rw2G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	888
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	3 cut(s)	294, 656, 827
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	11
AcuI	CTGAAG	2 cut(s)	130, 195
AfaI	GTAC	4 cut(s)	314, 575, 734, 804
AfiI	CCNNNNNNNGG	2 cut(s)	163, 548
AflII	CTTAAG	1 cut(s)	493
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	249
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	7 cut(s)	221, 436, 589, 624, 669, 722, 942
AluI	AGCT	7 cut(s)	221, 436, 589, 624, 669, 722, 942
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	595
AoxI	GGCC	3 cut(s)	11, 141, 178
ApeKI	GCWGC	5 cut(s)	206, 218, 436, 600, 866
AspLEI	GCGC	2 cut(s)	173, 541
AspS9I	GGNCC	2 cut(s)	179, 452
AsuC2I	CCSGG	3 cut(s)	110, 596, 597
AsuHPI	GGTGA	3 cut(s)	217, 584, 859
AsuNHI	GCTAGC	1 cut(s)	652
AvaI	CYCGRG	1 cut(s)	595
AvaII	GGWCC	1 cut(s)	452
AxyI	CCTNAGG	1 cut(s)	530
BalI	TGGCCA	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	888
BanII	GRGCYC	1 cut(s)	140
BbvI	GCAGC	5 cut(s)	193, 230, 423, 587, 853
BccI	CCATC	4 cut(s)	64, 438, 733, 785
BceAI	ACGGC	1 cut(s)	526
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	3 cut(s)	110, 596, 597
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	5 cut(s)	329, 653, 834, 939, 943
BfmI	CTRYAG	3 cut(s)	193, 456, 601
BfoI	RGCGCY	1 cut(s)	542
BfrI	CTTAAG	1 cut(s)	493
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	5 cut(s)	207, 219, 437, 601, 867
BlsI	GCNGC	5 cut(s)	208, 220, 438, 602, 868
Bme1390I	CCNGG	4 cut(s)	110, 251, 596, 597
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	595
BmgT120I	GGNCC	2 cut(s)	179, 452
BmiI	GGNNCC	2 cut(s)	890, 913
BmrFI	CCNGG	4 cut(s)	110, 251, 596, 597
BmsI	GCATC	3 cut(s)	159, 403, 921
BmtI	GCTAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	702
BpuMI	CCSGG	3 cut(s)	110, 596, 597
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	3 cut(s)	213, 240, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 548
Bse118I	RCCGGY	1 cut(s)	611
Bse21I	CCTNAGG	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	213, 240, 595
BseGI	GGATG	3 cut(s)	75, 150, 796
BseLI	CCNNNNNNNGG	2 cut(s)	163, 548
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	2 cut(s)	382, 743
BseXI	GCAGC	5 cut(s)	193, 230, 423, 587, 853
BshFI	GGCC	3 cut(s)	13, 143, 180
BshNI	GGYRCC	1 cut(s)	888
BsiHKCI	CYCGRG	1 cut(s)	595
BsiSI	CCGG	4 cut(s)	109, 596, 612, 753
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	163, 548
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	3 cut(s)	13, 143, 180
Bso31I	GGTCTC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	595
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	280
Bsp19I	CCATGG	2 cut(s)	213, 240
BspACI	CCGC	3 cut(s)	294, 656, 827
BspANI	GGCC	3 cut(s)	13, 143, 180
BspCNI	CTCAG	2 cut(s)	381, 742
BspLI	GGNNCC	2 cut(s)	890, 913
BspMAI	CTGCAG	1 cut(s)	605
BspMI	ACCTGC	1 cut(s)	284
BspOI	GCTAGC	1 cut(s)	656
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	888
BspTI	CTTAAG	1 cut(s)	493
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	611
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	3 cut(s)	213, 240, 595
BssMI	GATC	1 cut(s)	280
BssNAI	GTATAC	1 cut(s)	256
BssT1I	CCWWGG	2 cut(s)	213, 240
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	452, 526
Bst6I	CTCTTC	3 cut(s)	34, 612, 770
BstAFI	CTTAAG	1 cut(s)	493
BstAPI	GCANNNNNTGC	2 cut(s)	634, 863
BstC8I	GCNNGC	5 cut(s)	28, 626, 654, 667, 714
BstDEI	CTNAG	5 cut(s)	368, 530, 688, 729, 884
BstDSI	CCRYGG	2 cut(s)	213, 240
BstF5I	GGATG	3 cut(s)	75, 150, 796
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	2 cut(s)	173, 541
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	7 cut(s)	177, 215, 621, 634, 662, 863, 897
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	4 cut(s)	108, 249, 594, 595
BstSFI	CTRYAG	3 cut(s)	193, 456, 601
BstV1I	GCAGC	5 cut(s)	193, 230, 423, 587, 853
BstZ17I	GTATAC	1 cut(s)	256
Bsu36I	CCTNAGG	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	13, 143, 180
BtgI	CCRYGG	2 cut(s)	213, 240
BtsCI	GGATG	3 cut(s)	75, 150, 796
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	5 cut(s)	28, 626, 654, 667, 714
CfoI	GCGC	2 cut(s)	173, 541
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	179, 452
Cfr9I	CCCGGG	1 cut(s)	595
Csp6I	GTAC	4 cut(s)	313, 574, 733, 803
CspCI	CAANNNNNGTGG	4 cut(s)	621, 656, 889, 924
CviAII	CATG	3 cut(s)	202, 214, 241
CviQI	GTAC	4 cut(s)	313, 574, 733, 803
DdeI	CTNAG	5 cut(s)	368, 530, 688, 729, 884
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	3 cut(s)	34, 612, 770
EarI	CTCTTC	3 cut(s)	34, 612, 770
EciI	GGCGGA	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	213, 240
Eco24I	GRGCYC	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	130, 195
Eco81I	CCTNAGG	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	2 cut(s)	213, 240
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	2 cut(s)	213, 240
FaeI	CATG	3 cut(s)	205, 217, 244
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	3 cut(s)	201, 213, 240
FauI	CCCGC	1 cut(s)	649
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	5 cut(s)	207, 219, 437, 601, 867
FokI	GGATG	3 cut(s)	82, 137, 803
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	5 cut(s)	207, 219, 437, 601, 867
FspBI	CTAG	5 cut(s)	329, 653, 834, 939, 943
GlaI	GCGC	2 cut(s)	172, 540
GluI	GCNGC	5 cut(s)	207, 219, 437, 601, 867
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	3 cut(s)	13, 143, 180
HapII	CCGG	4 cut(s)	109, 596, 612, 753
HhaI	GCGC	2 cut(s)	173, 541
Hin1II	CATG	3 cut(s)	205, 217, 244
Hin6I	GCGC	2 cut(s)	171, 539
HinP1I	GCGC	2 cut(s)	171, 539
HindIII	AAGCTT	1 cut(s)	587
HpaII	CCGG	4 cut(s)	109, 596, 612, 753
HphI	GGTGA	3 cut(s)	217, 584, 859
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	395, 774, 921
Hpy188III	TCNNGA	4 cut(s)	232, 270, 562, 834
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	8 cut(s)	141, 154, 170, 238, 294, 318, 482, 746
HpyCH4III	ACNGT	2 cut(s)	452, 526
HpyCH4IV	ACGT	2 cut(s)	162, 409
HpyCH4V	TGCA	7 cut(s)	118, 416, 439, 603, 628, 712, 934
HpyF10VI	GCNNNNNNNGC	7 cut(s)	177, 215, 621, 634, 662, 863, 897
HpyF3I	CTNAG	5 cut(s)	368, 530, 688, 729, 884
HpySE526I	ACGT	2 cut(s)	162, 409
Hsp92II	CATG	3 cut(s)	205, 217, 244
HspAI	GCGC	2 cut(s)	171, 539
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	3 cut(s)	214, 727, 911
Lsp1109I	GCAGC	5 cut(s)	193, 230, 423, 587, 853
LweI	GCATC	3 cut(s)	159, 403, 921
MaeI	CTAG	5 cut(s)	329, 653, 834, 939, 943
MaeII	ACGT	2 cut(s)	162, 409
MaeIII	GTNAC	2 cut(s)	158, 223
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	4 cut(s)	51, 629, 787, 940
MfeI	CAATTG	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	13
MluCI	AATT	2 cut(s)	183, 858
MluNI	TGGCCA	1 cut(s)	13
MmeI	TCCRAC	3 cut(s)	43, 418, 430
Mox20I	TGGCCA	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	13
MseI	TTAA	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	13
MspA1I	CMGCKG	3 cut(s)	221, 436, 669
MspCI	CTTAAG	1 cut(s)	493
MspI	CCGG	4 cut(s)	109, 596, 612, 753
MspR9I	CCNGG	4 cut(s)	110, 251, 596, 597
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	7 cut(s)	177, 215, 621, 634, 662, 863, 897
NciI	CCSGG	3 cut(s)	110, 596, 597
NcoI	CCATGG	2 cut(s)	213, 240
NdeII	GATC	1 cut(s)	280
NheI	GCTAGC	1 cut(s)	652
NlaIII	CATG	3 cut(s)	205, 217, 244
NlaIV	GGNNCC	2 cut(s)	890, 913
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	223
PctI	GAATGC	1 cut(s)	241
PkrI	GCNGC	5 cut(s)	208, 220, 438, 602, 868
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	890, 913
PspPI	GGNCC	2 cut(s)	179, 452
PstI	CTGCAG	1 cut(s)	605
PvuII	CAGCTG	3 cut(s)	221, 436, 669
RsaI	GTAC	4 cut(s)	314, 575, 734, 804
RsaNI	GTAC	4 cut(s)	313, 574, 733, 803
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	5 cut(s)	207, 219, 437, 601, 867
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	2 cut(s)	179, 452
ScrFI	CCNGG	4 cut(s)	110, 251, 596, 597
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	3 cut(s)	159, 403, 921
SfcI	CTRYAG	3 cut(s)	193, 456, 601
SinI	GGWCC	1 cut(s)	452
SmaI	CCCGGG	1 cut(s)	597
SmlI	CTYRAG	2 cut(s)	493, 717
SmoI	CTYRAG	2 cut(s)	493, 717
Sse9I	AATT	2 cut(s)	183, 858
SsiI	CCGC	3 cut(s)	294, 656, 827
SspMI	CTAG	5 cut(s)	329, 653, 834, 939, 943
StyD4I	CCNGG	4 cut(s)	108, 249, 594, 595
StyI	CCWWGG	2 cut(s)	213, 240
TaaI	ACNGT	2 cut(s)	452, 526
TaiI	ACGT	2 cut(s)	165, 412
TaqI	TCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	183, 858
TatI	WGTACW	1 cut(s)	573
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	5 cut(s)	206, 218, 436, 600, 866
Tsp45I	GTSAC	1 cut(s)	223
TspGWI	ACGGA	1 cut(s)	146
TspMI	CCCGGG	1 cut(s)	595
Vha464I	CTTAAG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	452
XbaI	TCTAGA	1 cut(s)	833
XmaI	CCCGGG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	5 cut(s)	329, 653, 834, 939, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.