Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004732

Physical Location & Seq

Genomic Coordinates Reverse (-)

29970958 .. 29974038

Gene Structure 3081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGATTTCTGGCCGGAATTTCTTGCAAGCAGTTGGGGCAAAGAATTTGTGGCAGGAGGATGTGGAGGCATTGCTGGTATAATATCTGGTTATCCACTTGACACTCTTAGGATTTTGCAACAGAATTCAAAGAGTGGCTCTGCCTTTAACATTCTTCGCAATGTCATCTCCAAAGAAGGCCCTAGTGCCCTTTACAGGGGCATGGCTGCCCCCTTGGCATCCATTACACTTCAGAATGCTATGGTTTTCCAGTCATACGCCATTCTCTCTCGGGCTCTCGATCCATCAGTGTCCACTAAAGATCCTCCTTCTTACAAAGGTGTTGCTCTAGGAGGGTTCGGGGCAGGTGCTTTGCAGAGTCTAGTCCTCAGCCCAGTAGAACTCATAAAAATCCGGCTTCAGCTGCAAACCAAAACCCAAAAGGGGCCCAGAGAAGTTGCCAAAAGCATTATGAAAGCAGAGGGGCTAAGAGGATTATATAGAGGCCTGGGCATTACTATTCTTAGGGATGCACCAGCTCATGGTTTGTACTTTTGGACTTATGAGTATATGAGAGAGCAGCTTCATCCCGACTGTAGAAAAACCGGTGAAGAGAGCGTACAAACAATGTTGGTAGCTGGAGGGCTAGCAGGAGTAGCTAGCTGGATTTGTTGTTATCCCTTGGATGTTGTAAAGACCAGATTACAGGCTCAATCAGCGTACCCTCCACCGAAATATACTGGCATAGTTGATTGCTTCAGAAAGAGTGTGAGAGAGGATGGTCTTGCGGTCCTCTGGCGAGGACTAGGAACTGCTGTTTTGAGAGCGTTTCTGGTGAATGGTGCTGTTTTTGCAGCTTATGAGATTGCTCTGAGATGCCTTCTCAGCAATGGAAGAATTCCAATAGAGAATGCAATGCCTGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

302

Amino Acids

32.74

Weight (kDa)

9.27

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	11 - 93	7.5e-14	Mitochondrial carrier protein
Mito_carr	PF00153	109 - 188	6.3e-23	Mitochondrial carrier protein
Mito_carr	PF00153	199 - 288	8.8e-26	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79900
fragaria_vesca	FvH4_6g31430 FvH4_6g31440 FvH4_6g31440
malus_domestica	MD09G1211700.v1.1 MD17G1194000.v1.1
prunus_persica	Prupe.3G069700_v2.0.a1
pyrus_communis	pycom09g12890 pycom17g19990
rosa_chinensis	RchiOBHm_Chr2g0138231 RchiOBHm_Chr2g0138241
rosa_laevigata	RLG00000019727 RLG00000019728
rosa_multiflora	Rmu_sc0004576.1_g000030 Rmu_sc0004576.1_g000031 Rmu_sc0006570.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106390 Rroxscaffold_2G00106400
rosa_rugosa	Rorug02G0350000 Rorug02G0350100 Rorug02G0350200
rosa_samantha	Rh2AG396600 Rh2AG396700 Rh2BG409600 Rh2BG409800 Rh2CG383100 Rh2CG383200 Rh2DG418300 Rh2DG418500
rosa_wichuraiana	Rw2G032430 Rw2G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	335
Acc36I	ACCTGC	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	521
AciI	CCGC	1 cut(s)	767
AclWI	GGATC	2 cut(s)	275, 296
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	4 cut(s)	17, 44, 124, 876
AcuI	CTGAAG	3 cut(s)	215, 383, 721
AfaI	GTAC	3 cut(s)	530, 600, 701
AfiI	CCNNNNNNNGG	4 cut(s)	195, 196, 423, 521
AgeI	ACCGGT	1 cut(s)	584
AgsI	TTSAA	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	7 cut(s)	403, 518, 562, 617, 638, 642, 836
AluI	AGCT	7 cut(s)	403, 518, 562, 617, 638, 642, 836
AlwI	GGATC	2 cut(s)	275, 296
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	4 cut(s)	11, 178, 425, 484
ApaI	GGGCCC	1 cut(s)	429
ApeKI	GCWGC	4 cut(s)	206, 403, 559, 833
ApoI	RAATTY	4 cut(s)	17, 44, 124, 876
AsiGI	ACCGGT	1 cut(s)	584
AspS9I	GGNCC	4 cut(s)	179, 425, 426, 769
AsuHPI	GGTGA	2 cut(s)	599, 826
AsuNHI	GCTAGC	2 cut(s)	625, 638
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	769
BaeGI	GKGCMC	2 cut(s)	190, 429
BanII	GRGCYC	2 cut(s)	277, 429
BarI	GAAGNNNNNNTAC	2 cut(s)	582, 614
BbvCI	CCTCAGC	1 cut(s)	368
BbvI	GCAGC	4 cut(s)	193, 390, 571, 845
BccI	CCATC	2 cut(s)	292, 752
BciT130I	CCWGG	1 cut(s)	488
BfaI	CTAG	6 cut(s)	183, 329, 362, 626, 639, 785
BfmI	CTRYAG	1 cut(s)	574
BfuAI	ACCTGC	1 cut(s)	335
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	4 cut(s)	207, 404, 560, 834
BlsI	GCNGC	4 cut(s)	208, 405, 561, 835
Bme1390I	CCNGG	1 cut(s)	488
Bme18I	GGWCC	1 cut(s)	769
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	4 cut(s)	179, 425, 426, 769
BmiI	GGNNCC	2 cut(s)	426, 427
BmrFI	CCNGG	1 cut(s)	488
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	3 cut(s)	227, 499, 845
BmtI	GCTAGC	2 cut(s)	629, 642
BmuI	ACTGGG	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	639
Bpu10I	CCTNAGC	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	213, 487, 660
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 196, 423, 521
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	3 cut(s)	250, 374, 724
Bse3DI	GCAATG	4 cut(s)	69, 166, 874, 900
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	3 cut(s)	213, 487, 660
BseGI	GGATG	6 cut(s)	65, 218, 514, 565, 670, 763
BseLI	CCNNNNNNNGG	4 cut(s)	195, 196, 423, 521
BseMI	GCAATG	4 cut(s)	69, 166, 874, 900
BseMII	CTCAG	3 cut(s)	382, 842, 877
BseNI	ACTGG	3 cut(s)	250, 374, 724
BseSI	GKGCMC	2 cut(s)	190, 429
BseXI	GCAGC	4 cut(s)	193, 390, 571, 845
BshFI	GGCC	4 cut(s)	13, 180, 427, 486
BshTI	ACCGGT	1 cut(s)	584
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	14, 394, 585
BslI	CCNNNNNNNGG	4 cut(s)	195, 196, 423, 521
BsmI	GAATGC	2 cut(s)	241, 895
BsnI	GGCC	4 cut(s)	13, 180, 427, 486
BsoBI	CYCGRG	1 cut(s)	270
Bsp120I	GGGCCC	1 cut(s)	425
Bsp1286I	GDGCHC	3 cut(s)	190, 277, 429
Bsp143I	GATC	2 cut(s)	280, 301
BspACI	CCGC	1 cut(s)	767
BspANI	GGCC	4 cut(s)	13, 180, 427, 486
BspCNI	CTCAG	3 cut(s)	381, 843, 876
BspLI	GGNNCC	2 cut(s)	426, 427
BspMI	ACCTGC	1 cut(s)	335
BspOI	GCTAGC	2 cut(s)	629, 642
BspPI	GGATC	2 cut(s)	275, 296
BsrDI	GCAATG	4 cut(s)	69, 166, 874, 900
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	3 cut(s)	250, 374, 724
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	3 cut(s)	213, 487, 660
BssMI	GATC	2 cut(s)	280, 301
BssT1I	CCWWGG	2 cut(s)	213, 660
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	2 cut(s)	575, 906
Bst6I	CTCTTC	1 cut(s)	585
BstC8I	GCNNGC	3 cut(s)	28, 627, 640
BstDEI	CTNAG	6 cut(s)	107, 368, 467, 503, 851, 863
BstF5I	GGATG	6 cut(s)	65, 218, 514, 565, 670, 763
BstKTI	GATC	2 cut(s)	283, 304
BstMBI	GATC	2 cut(s)	280, 301
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 215, 403, 635, 695, 830, 864
BstNI	CCWGG	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	486
BstSFI	CTRYAG	1 cut(s)	574
BstSLI	GKGCMC	2 cut(s)	190, 429
BstV1I	GCAGC	4 cut(s)	193, 390, 571, 845
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	13, 180, 427, 486
BtsCI	GGATG	6 cut(s)	65, 218, 514, 565, 670, 763
BtsIMutI	CAGTG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	3 cut(s)	28, 627, 640
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	4 cut(s)	179, 425, 426, 769
Csp6I	GTAC	3 cut(s)	529, 599, 700
CspAI	ACCGGT	1 cut(s)	584
CviAII	CATG	2 cut(s)	202, 521
CviQI	GTAC	3 cut(s)	529, 599, 700
DdeI	CTNAG	6 cut(s)	107, 368, 467, 503, 851, 863
DpnI	GATC	2 cut(s)	282, 303
DpnII	GATC	2 cut(s)	280, 301
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco130I	CCWWGG	2 cut(s)	213, 660
Eco147I	AGGCCT	1 cut(s)	486
Eco24I	GRGCYC	2 cut(s)	277, 429
Eco47I	GGWCC	1 cut(s)	769
Eco57I	CTGAAG	3 cut(s)	215, 383, 721
Eco88I	CYCGRG	1 cut(s)	270
EcoO109I	RGGNCCY	2 cut(s)	179, 425
EcoRI	GAATTC	2 cut(s)	124, 876
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	2 cut(s)	213, 660
EcoT38I	GRGCYC	2 cut(s)	277, 429
ErhI	CCWWGG	2 cut(s)	213, 660
FaeI	CATG	2 cut(s)	205, 524
FatI	CATG	2 cut(s)	201, 520
Fnu4HI	GCNGC	4 cut(s)	207, 404, 560, 834
FokI	GGATG	6 cut(s)	72, 205, 521, 552, 677, 770
FriOI	GRGCYC	2 cut(s)	277, 429
Fsp4HI	GCNGC	4 cut(s)	207, 404, 560, 834
FspBI	CTAG	6 cut(s)	183, 329, 362, 626, 639, 785
GluI	GCNGC	4 cut(s)	207, 404, 560, 834
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	4 cut(s)	13, 180, 427, 486
HapII	CCGG	3 cut(s)	14, 394, 585
Hin1II	CATG	2 cut(s)	205, 524
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	3 cut(s)	14, 394, 585
HphI	GGTGA	2 cut(s)	599, 826
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	3 cut(s)	234, 740, 852
Hpy188III	TCNNGA	2 cut(s)	278, 569
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	3 cut(s)	170, 318, 869
HpyCH4III	ACNGT	2 cut(s)	575, 906
HpyCH4V	TGCA	7 cut(s)	26, 118, 355, 406, 512, 833, 893
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 215, 403, 635, 695, 830, 864
HpyF3I	CTNAG	6 cut(s)	107, 368, 467, 503, 851, 863
Hsp92II	CATG	2 cut(s)	205, 524
Kzo9I	GATC	2 cut(s)	280, 301
Lsp1109I	GCAGC	4 cut(s)	193, 390, 571, 845
LweI	GCATC	3 cut(s)	227, 499, 845
MaeI	CTAG	6 cut(s)	183, 329, 362, 626, 639, 785
MalI	GATC	2 cut(s)	282, 303
MboI	GATC	2 cut(s)	280, 301
MboII	GAAGA	3 cut(s)	146, 602, 885
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	3 cut(s)	190, 277, 429
MluCI	AATT	4 cut(s)	17, 44, 124, 876
MlyI	GAGTC	1 cut(s)	367
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	3 cut(s)	14, 394, 585
MspR9I	CCNGG	1 cut(s)	488
Mva1269I	GAATGC	2 cut(s)	241, 895
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	7 cut(s)	36, 215, 403, 635, 695, 830, 864
NdeII	GATC	2 cut(s)	280, 301
NheI	GCTAGC	2 cut(s)	625, 638
NlaIII	CATG	2 cut(s)	205, 524
NlaIV	GGNNCC	2 cut(s)	426, 427
PaqCI	CACCTGC	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	486
PctI	GAATGC	2 cut(s)	241, 895
PflMI	CCANNNNNTGG	1 cut(s)	521
PinAI	ACCGGT	1 cut(s)	584
PkrI	GCNGC	4 cut(s)	208, 405, 561, 835
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	426, 427
PspOMI	GGGCCC	1 cut(s)	425
PspPI	GGNCC	4 cut(s)	179, 425, 426, 769
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	3 cut(s)	530, 600, 701
RsaNI	GTAC	3 cut(s)	529, 599, 700
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	4 cut(s)	207, 404, 560, 834
Sau3AI	GATC	2 cut(s)	280, 301
Sau96I	GGNCC	4 cut(s)	179, 425, 426, 769
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	488
SduI	GDGCHC	3 cut(s)	190, 277, 429
SetI	ASST	9 cut(s)	322, 349, 405, 520, 564, 619, 640, 644, 838
SfaNI	GCATC	3 cut(s)	227, 499, 845
SfcI	CTRYAG	1 cut(s)	574
SinI	GGWCC	1 cut(s)	769
Sse9I	AATT	4 cut(s)	17, 44, 124, 876
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	1 cut(s)	767
SspMI	CTAG	6 cut(s)	183, 329, 362, 626, 639, 785
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	2 cut(s)	213, 660
TaaI	ACNGT	2 cut(s)	575, 906
TaqI	TCGA	1 cut(s)	279
TasI	AATT	4 cut(s)	17, 44, 124, 876
TatI	WGTACW	1 cut(s)	528
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	4 cut(s)	206, 403, 559, 833
TspDTI	ATGAA	2 cut(s)	467, 554
TspRI	CASTG	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	769
XapI	RAATTY	4 cut(s)	17, 44, 124, 876
XspI	CTAG	6 cut(s)	183, 329, 362, 626, 639, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.