Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004732

Physical Location & Seq

Genomic Coordinates Reverse (-)

20665714 .. 20666442

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1211700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATTTGTGCATTGCAGAATGCCATGGTTTTCCAGGTATATGCTATCCTCTCCCGAACCTGCGATCCTTCTGTTTCCGCCAAAGACCCTCCTTCATACAAAGGTGTTGCTCTAGGAGGATTTGGCACAGGTGCTATACAGAGCCTAATACTCAGTCCTGTAGAACTTGTAAAAATCCGACTTCAACTCCAACGTGATGCAAAATCAAAACCCCATCAGCTGCAATCTCACAACGGCCCTATAGATGTTGCCAAAAGCATAATGAGAGCAGAAGGCTTAAGGGGAATATATAGAGGACTTTTTATTACTGTCCTTAGGGAAGCGCCGTCCTATGGCTTATACTTCTGGACTTATGAGTATATAAGAGAGAAGCTTCACCCAGGCTGCAGAAAGACCGGCGAAGAGAGCTTGCAAACAATGCTGGTGGCAGGAGGGCTAGCGGGAATTGCCAGCTGGATTTGTTGTTATCCCTTAGATGTTGTGAAAACGAGATTGCAGGCTCAAGATCCATCTCAGTACCTTCCACCCAGATATTCCGGCATTGCTGATTGCTTTCGGAAGAGTGTGAGAGATGATGGTTATGGGGTGCTATGGCGAGGATTAGGAACTGCGGTTTCTAGAGCATTTCTGGTGAATGGGGCAATTTTTGCTACTTATGAGATTGCTCTGAGGTGCCTATTCAGCAACAGCAGTAGAGCCATTCAGACAGAGAAGATACAATCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

243

Amino Acids

26.69

Weight (kDa)

9.34

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	37 - 125	1.4e-21	Mitochondrial carrier protein
Mito_carr	PF00153	136 - 228	2.1e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79900
fragaria_vesca	FvH4_6g31430 FvH4_6g31440 FvH4_6g31440
malus_domestica	MD09G1211700.v1.1 MD17G1194000.v1.1
prunus_persica	Prupe.3G069700_v2.0.a1
pyrus_communis	pycom09g12890 pycom17g19990
rosa_chinensis	RchiOBHm_Chr2g0138231 RchiOBHm_Chr2g0138241
rosa_laevigata	RLG00000019727 RLG00000019728
rosa_multiflora	Rmu_sc0004576.1_g000030 Rmu_sc0004576.1_g000031 Rmu_sc0006570.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106390 Rroxscaffold_2G00106400
rosa_rugosa	Rorug02G0350000 Rorug02G0350100 Rorug02G0350200
rosa_samantha	Rh2AG396600 Rh2AG396700 Rh2BG409600 Rh2BG409800 Rh2CG383100 Rh2CG383200 Rh2DG418300 Rh2DG418500
rosa_wichuraiana	Rw2G032430 Rw2G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	672
AciI	CCGC	3 cut(s)	78, 440, 611
AclWI	GGATC	2 cut(s)	59, 500
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	1 cut(s)	332
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	2 cut(s)	33, 379
AloI	GAACNNNNNNTCC	2 cut(s)	49, 81
AluBI	AGCT	5 cut(s)	220, 373, 408, 453, 726
AluI	AGCT	5 cut(s)	220, 373, 408, 453, 726
AlwI	GGATC	2 cut(s)	59, 500
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	220, 384
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	368, 643
AsuNHI	GCTAGC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	672
BbvI	GCAGC	2 cut(s)	207, 371
BccI	CCATC	3 cut(s)	222, 517, 569
BceAI	ACGGC	2 cut(s)	250, 310
BciT130I	CCWGG	2 cut(s)	35, 381
BfaI	CTAG	5 cut(s)	113, 437, 618, 723, 727
BfmI	CTRYAG	3 cut(s)	159, 240, 385
BfoI	RGCGCY	1 cut(s)	326
BfrI	CTTAAG	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	221, 385
BlsI	GCNGC	2 cut(s)	222, 386
Bme1390I	CCNGG	2 cut(s)	35, 381
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	674
BmrFI	CCNGG	2 cut(s)	35, 381
BmsI	GCATC	1 cut(s)	187
BmtI	GCTAGC	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	24, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	395
Bse21I	CCTNAGG	1 cut(s)	314
Bse3DI	GCAATG	2 cut(s)	11, 540
BseBI	CCWGG	2 cut(s)	35, 381
BseDI	CCNNGG	2 cut(s)	24, 379
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	2 cut(s)	11, 540
BseMII	CTCAG	3 cut(s)	166, 527, 659
BseXI	GCAGC	2 cut(s)	207, 371
BshFI	GGCC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	672
BsiSI	CCGG	2 cut(s)	396, 537
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	64, 505
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	78, 440, 611
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	3 cut(s)	165, 526, 660
BspLI	GGNNCC	1 cut(s)	674
BspMAI	CTGCAG	1 cut(s)	389
BspMI	ACCTGC	1 cut(s)	68
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	59, 500
BspT107I	GGYRCC	1 cut(s)	672
BspTI	CTTAAG	1 cut(s)	277
BsrDI	GCAATG	2 cut(s)	11, 540
BsrFI	RCCGGY	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	24, 379
BssMI	GATC	2 cut(s)	64, 505
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	2 cut(s)	35, 381
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	2 cut(s)	396, 554
BstAFI	CTTAAG	1 cut(s)	277
BstAPI	GCANNNNNTGC	2 cut(s)	418, 647
BstC8I	GCNNGC	4 cut(s)	410, 438, 451, 498
BstDEI	CTNAG	5 cut(s)	152, 314, 472, 513, 668
BstDSI	CCRYGG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	2 cut(s)	67, 508
BstMBI	GATC	2 cut(s)	64, 505
BstMWI	GCNNNNNNNGC	5 cut(s)	405, 418, 446, 647, 681
BstNI	CCWGG	2 cut(s)	35, 381
BstSCI	CCNGG	2 cut(s)	33, 379
BstSFI	CTRYAG	3 cut(s)	159, 240, 385
BstV1I	GCAGC	2 cut(s)	207, 371
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
Bsu36I	CCTNAGG	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	4 cut(s)	410, 438, 451, 498
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	517
CspCI	CAANNNNNGTGG	2 cut(s)	405, 440
CviAII	CATG	1 cut(s)	25
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	5 cut(s)	152, 314, 472, 513, 668
DpnI	GATC	2 cut(s)	66, 507
DpnII	GATC	2 cut(s)	64, 505
Eam1104I	CTCTTC	2 cut(s)	396, 554
EarI	CTCTTC	2 cut(s)	396, 554
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	24
Eco81I	CCTNAGG	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	33, 379
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	28
FatI	CATG	1 cut(s)	24
FauI	CCCGC	1 cut(s)	433
Fnu4HI	GCNGC	2 cut(s)	221, 385
Fsp4HI	GCNGC	2 cut(s)	221, 385
FspBI	CTAG	5 cut(s)	113, 437, 618, 723, 727
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	2 cut(s)	221, 385
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	2 cut(s)	396, 537
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	371
HpaII	CCGG	2 cut(s)	396, 537
HphI	GGTGA	2 cut(s)	368, 643
Hpy188I	TCNGA	4 cut(s)	179, 558, 669, 705
Hpy188III	TCNNGA	4 cut(s)	54, 346, 503, 618
HpyAV	CCTTC	4 cut(s)	78, 102, 266, 530
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	7 cut(s)	11, 16, 200, 223, 387, 412, 496
HpyF10VI	GCNNNNNNNGC	5 cut(s)	405, 418, 446, 647, 681
HpyF3I	CTNAG	5 cut(s)	152, 314, 472, 513, 668
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	2 cut(s)	64, 505
Lsp1109I	GCAGC	2 cut(s)	207, 371
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	5 cut(s)	113, 437, 618, 723, 727
MaeII	ACGT	1 cut(s)	193
MalI	GATC	2 cut(s)	66, 507
MboI	GATC	2 cut(s)	64, 505
MboII	GAAGA	3 cut(s)	413, 571, 724
MflI	RGATCY	1 cut(s)	505
MluCI	AATT	2 cut(s)	444, 642
MmeI	TCCRAC	2 cut(s)	202, 214
MnlI	CCTC	7 cut(s)	59, 99, 110, 287, 425, 590, 663
MseI	TTAA	1 cut(s)	278
MspA1I	CMGCKG	2 cut(s)	220, 453
MspCI	CTTAAG	1 cut(s)	277
MspI	CCGG	2 cut(s)	396, 537
MspR9I	CCNGG	2 cut(s)	35, 381
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	2 cut(s)	35, 381
MwoI	GCNNNNNNNGC	5 cut(s)	405, 418, 446, 647, 681
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	64, 505
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	674
PctI	GAATGC	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	222, 386
Psp6I	CCWGG	2 cut(s)	33, 379
PspGI	CCWGG	2 cut(s)	33, 379
PspN4I	GGNNCC	1 cut(s)	674
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	505
PvuII	CAGCTG	2 cut(s)	220, 453
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	2 cut(s)	221, 385
Sau3AI	GATC	2 cut(s)	64, 505
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	35, 381
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	3 cut(s)	159, 240, 385
SmlI	CTYRAG	2 cut(s)	277, 501
SmoI	CTYRAG	2 cut(s)	277, 501
Sse9I	AATT	2 cut(s)	444, 642
SsiI	CCGC	3 cut(s)	78, 440, 611
SspMI	CTAG	5 cut(s)	113, 437, 618, 723, 727
StyD4I	CCNGG	2 cut(s)	33, 379
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	196
TasI	AATT	2 cut(s)	444, 642
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseI	GCWGC	2 cut(s)	220, 384
TspDTI	ATGAA	1 cut(s)	84
Vha464I	CTTAAG	1 cut(s)	277
XbaI	TCTAGA	1 cut(s)	617
XspI	CTAG	5 cut(s)	113, 437, 618, 723, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.