Rorug02G0350200

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004732
Physical Location & Seq
Forward (+)
44003637 .. 44009434
5798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0350200.1

Sequence Viewer

Length: 1134 bp
ATGATGTTGCTCCTTAATATTATCCTTCTCGGGGCAGAAGCTTTAATGATTCTGAACCTTATATTAACAACAAGCAAAGAAGAAAGGGCTCGGTTACCAGAAAACAACCTCCTGAAAATTTTTGTAGCAGACAAAGAGAAAGCCAGTTTGTGTGAGACTACCAGACATTTGCTGGTTCAAGTTATGAAGGGGCTTGATTTGGTGCGCAAGAGACCACTTAACAAAAAGGAATTGGCAATGAATGAGGAAGACATAATAGACACACTTTCCAACTCTGTAACAGTTCATGAGACTAAGCTCAAGAGCCGGCTGAATACAGATGATGCCTCCTTCTTTTACTTCTTCCTGCCATTGGGATGTAAAAAGTTGACAACATATGTGGAGAAACATGAGTTTGTTTTTGATGCAGTGCTGAATGAGGAAGTGTCTAATGATGAGGGGCTTTCACAACATTATTTGCAGATGCAGTTGTATTCACAGTTGTATTGGCCATCATGTCTTCGCTTTCTGGTTTTCTTTGGCCTCATTGTAGTTGGAGGATTTGAAGCTGTGAAACATTTGAACCAGCTTCAAGGATGTCTTGAAGTTGTTATACACGTGGACTACTCTAGGAAAGATGCTAGTGAGACTAAGAAAGTGCATTTGGTAAATAAGAAAGATCTCCTTCATTTGAAACTATATTTTTATTGTGAATGTGATGAACTGATATATTGGGATGGTGTATCTGAATGGTCTACAAGTAGAAAAAAGGATGAAGAAATCCTAGAATCCTTACAACCACACCAAGGTTTGGAATCTTTGAGCATCAACTACCATGATGGCATTAGCTTGTCTCCAAGTTGGATGATGTCTTTGCACAACTTGAGAAGGCTTACAATTCTTTGTTGCCTAAGATGTTACTTTTTGCCTCCTCTGGGAAAACTGTCATCCCTTGAATCACTGCATTTTTGCCAAATGCGTGGTGTCGAGAAGGTGGGAGTTGAGTTTCTGGGTATACAATTAGAAGCACAAACATCATTCAATTCATCATCAGCACTTACTTTATTTCCAAGACTGAAACAACTCATCTTTGAAGAGTTTCGGTATTGGAAAGAGTGGGAAGGAGTTGTAGGGTGGAGGGAAGACGAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

377

Amino Acids

43.82

Weight (kDa)

5.79

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 183 - 319 2.9e-24 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 790
AccI GTMKAC 2 cut(s) 734, 994
AcoI YGGCCR 1 cut(s) 488
AcsI RAATTY 1 cut(s) 117
AcvI CACGTG 1 cut(s) 598
AfiI CCNNNNNNNGG 5 cut(s) 31, 352, 785, 790, 914
AflIII ACRYGT 1 cut(s) 595
AgsI TTSAA 9 cut(s) 179, 545, 562, 572, 584, 673, 935, 1021, 1073
AjuI GAANNNNNNNTTGG 2 cut(s) 626, 658
AluBI AGCT 5 cut(s) 41, 298, 548, 568, 828
AluI AGCT 5 cut(s) 41, 298, 548, 568, 828
Alw26I GTCTC 5 cut(s) 149, 205, 284, 620, 837
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 2 cut(s) 488, 520
ApoI RAATTY 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 1077
AspLEI GCGC 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 29
BalI TGGCCA 1 cut(s) 490
BanII GRGCYC 1 cut(s) 91
BarI GAAGNNNNNNTAC 2 cut(s) 576, 608
BbrPI CACGTG 1 cut(s) 598
BbsI GAAGAC 3 cut(s) 255, 491, 1128
BccI CCATC 3 cut(s) 499, 710, 812
BcoDI GTCTC 5 cut(s) 149, 205, 284, 620, 837
BfaI CTAG 3 cut(s) 609, 621, 764
BglII AGATCT 1 cut(s) 658
BmeT110I CYCGRG 1 cut(s) 29
BmsI GCATC 5 cut(s) 313, 394, 453, 607, 813
BpiI GAAGAC 3 cut(s) 255, 491, 1128
BpuEI CTTGAG 2 cut(s) 284, 883
BsaAI YACGTR 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 784
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 352, 785, 790, 914
Bse118I RCCGGY 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 784
BseGI GGATG 6 cut(s) 362, 581, 721, 757, 849, 926
BseLI CCNNNNNNNGG 5 cut(s) 31, 352, 785, 790, 914
BseMI GCAATG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 900
BshFI GGCC 2 cut(s) 490, 522
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 307
BslI CCNNNNNNNGG 5 cut(s) 31, 352, 785, 790, 914
BsmAI GTCTC 5 cut(s) 149, 205, 284, 620, 837
BsnI GGCC 2 cut(s) 490, 522
Bso31I GGTCTC 1 cut(s) 205
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 658
BspANI GGCC 2 cut(s) 490, 522
BspHI TCATGA 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 306
BsrI ACTGG 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 784
BssMI GATC 1 cut(s) 658
BssNAI GTATAC 1 cut(s) 995
BssT1I CCWWGG 1 cut(s) 784
Bst1107I GTATAC 1 cut(s) 995
Bst4CI ACNGT 3 cut(s) 283, 480, 924
Bst6I CTCTTC 1 cut(s) 1068
BstBAI YACGTR 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 3 cut(s) 294, 630, 890
BstEII GGTNACC 1 cut(s) 93
BstF5I GGATG 6 cut(s) 362, 581, 721, 757, 849, 926
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 1 cut(s) 661
BstMAI GTCTC 5 cut(s) 149, 205, 284, 620, 837
BstMBI GATC 1 cut(s) 658
BstPI GGTNACC 1 cut(s) 93
BstV2I GAAGAC 3 cut(s) 255, 491, 1128
BstX2I RGATCY 1 cut(s) 658
BstXI CCANNNNNNTGG 1 cut(s) 959
BstYI RGATCY 1 cut(s) 658
BstZ17I GTATAC 1 cut(s) 995
BsuRI GGCC 2 cut(s) 490, 522
BtsCI GGATG 6 cut(s) 362, 581, 721, 757, 849, 926
BtsI GCAGTG 2 cut(s) 414, 938
BtsIMutI CAGTG 2 cut(s) 414, 938
Cac8I GCNNGC 1 cut(s) 308
CciI TCATGA 1 cut(s) 286
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 306
CspCI CAANNNNNGTGG 2 cut(s) 360, 395
CviAII CATG 4 cut(s) 287, 389, 495, 815
DdeI CTNAG 3 cut(s) 294, 630, 890
DpnI GATC 1 cut(s) 660
DpnII GATC 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 1068
EarI CTCTTC 1 cut(s) 1068
Eco130I CCWWGG 1 cut(s) 784
Eco24I GRGCYC 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 598
Eco88I CYCGRG 1 cut(s) 29
Eco91I GGTNACC 1 cut(s) 93
EcoO65I GGTNACC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 784
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 4 cut(s) 290, 392, 498, 818
FalI AAGNNNNNCTT 4 cut(s) 564, 596, 648, 680
FatI CATG 4 cut(s) 286, 388, 494, 814
FauNDI CATATG 1 cut(s) 376
FblI GTMKAC 2 cut(s) 734, 994
FokI GGATG 6 cut(s) 369, 588, 728, 764, 856, 913
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 3 cut(s) 609, 621, 764
FspI TGCGCA 1 cut(s) 206
GlaI GCGC 1 cut(s) 206
HaeIII GGCC 2 cut(s) 490, 522
HapII CCGG 1 cut(s) 307
HhaI GCGC 1 cut(s) 207
Hin1II CATG 4 cut(s) 290, 392, 498, 818
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 4 cut(s) 49, 767, 794, 935
HpaII CCGG 1 cut(s) 307
Hpy166II GTNNAC 4 cut(s) 369, 601, 735, 995
Hpy188I TCNGA 2 cut(s) 54, 727
Hpy188III TCNNGA 5 cut(s) 112, 287, 301, 581, 967
Hpy8I GTNNAC 4 cut(s) 369, 601, 735, 995
HpyAV CCTTC 7 cut(s) 35, 181, 340, 674, 861, 964, 1094
HpyCH4III ACNGT 3 cut(s) 283, 480, 924
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 6 cut(s) 407, 460, 466, 640, 856, 943
HpyF3I CTNAG 3 cut(s) 294, 630, 890
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 4 cut(s) 290, 392, 498, 818
HspAI GCGC 1 cut(s) 205
KroI GCCGGC 1 cut(s) 306
KroNI GCCGGC 1 cut(s) 308
Kzo9I GATC 1 cut(s) 658
LmnI GCTCC 1 cut(s) 15
LweI GCATC 5 cut(s) 313, 394, 453, 607, 813
MaeI CTAG 3 cut(s) 609, 621, 764
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 3 cut(s) 93, 277, 896
MalI GATC 1 cut(s) 660
MboI GATC 1 cut(s) 658
MboII GAAGA 7 cut(s) 92, 260, 334, 491, 767, 1085, 1133
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 490
MluCI AATT 5 cut(s) 117, 230, 876, 998, 1021
MluNI TGGCCA 1 cut(s) 490
MmeI TCCRAC 3 cut(s) 294, 514, 821
Mox20I TGGCCA 1 cut(s) 490
MroNI GCCGGC 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 1077
MscI TGGCCA 1 cut(s) 490
MseI TTAA 4 cut(s) 15, 44, 65, 219
MslI CAYNNNNRTG 1 cut(s) 355
Msp20I TGGCCA 1 cut(s) 490
MspI CCGG 1 cut(s) 307
NaeI GCCGGC 1 cut(s) 308
NdeI CATATG 1 cut(s) 376
NdeII GATC 1 cut(s) 658
NgoMIV GCCGGC 1 cut(s) 306
NlaIII CATG 4 cut(s) 290, 392, 498, 818
NsbI TGCGCA 1 cut(s) 206
PagI TCATGA 1 cut(s) 286
PdiI GCCGGC 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 1077
PfeI GAWTC 4 cut(s) 49, 767, 794, 935
PflMI CCANNNNNTGG 1 cut(s) 790
PmaCI CACGTG 1 cut(s) 598
PmlI CACGTG 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 598
PspCI CACGTG 1 cut(s) 598
PspEI GGTNACC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 658
RseI CAYNNNNRTG 1 cut(s) 355
SaqAI TTAA 4 cut(s) 15, 44, 65, 219
Sau3AI GATC 1 cut(s) 658
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 5 cut(s) 313, 394, 453, 607, 813
SmiMI CAYNNNNRTG 1 cut(s) 355
SmlI CTYRAG 2 cut(s) 299, 862
SmoI CTYRAG 2 cut(s) 299, 862
Sse9I AATT 5 cut(s) 117, 230, 876, 998, 1021
SspI AATATT 1 cut(s) 19
SspMI CTAG 3 cut(s) 609, 621, 764
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 3 cut(s) 283, 480, 924
TaiI ACGT 1 cut(s) 600
TaqI TCGA 1 cut(s) 966
TasI AATT 5 cut(s) 117, 230, 876, 998, 1021
TfiI GAWTC 4 cut(s) 49, 767, 794, 935
Tru1I TTAA 4 cut(s) 15, 44, 65, 219
Tru9I TTAA 4 cut(s) 15, 44, 65, 219
TscAI CASTG 2 cut(s) 414, 945
TspDTI ATGAA 7 cut(s) 200, 254, 275, 656, 714, 768, 1014
TspRI CASTG 2 cut(s) 414, 945
Van91I CCANNNNNTGG 1 cut(s) 790
XapI RAATTY 1 cut(s) 117
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmiI GTMKAC 2 cut(s) 734, 994
XmnI GAANNNNTTC 1 cut(s) 1077
XspI CTAG 3 cut(s) 609, 621, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.