Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004732

Physical Location & Seq

Genomic Coordinates Reverse (-)

29974915 .. 29976898

Gene Structure 1984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAAGAGTTTGTCGCTAGCAGTTGGGGAAGAGAATTTGTGGCTGGAGGTTTTGGAGGCATTGCTGGTATAATTTCAGGGCACCCACTTGACACTCTTAGAATCATGCAACAGAGTTCAAAAACTGGTACTGCTTTCAGCATTCTTCGCAATGTTGTCACCACGGAAGGCCCGACTGCCCTTTACAGAGGCATAGCTGCTCCCTTGGCCTCCATCACATTTCAGAGTGCCATGGTTTTCCAAACATATGCCACTCTCTCTCGAGCTCTGGATCCATCGGTTTCTCCTAAAGACCCTCCTTCTTACAAAGGTGTTGCTCTGGGAGGATTTGGGGCTGGTGCTGTGCAGAGTTTGATGATCACCCCAGTAGAACTCGTAAAAATCCGTCTTCAGCTGCAAACCGAGAGCCATACAGGCCCCATAGATGTTGCCAAAAGCATAATCAAAGCAGAAGGGGTAAAAGGAATGTATAGAGGCTTAACCATCACCATGCTAAGGGATGCACCAGCTCATGCTTTCTATTTTTGTACTTATGAGTACATGAAAGAGCAGCTTCACCCGGGATGTAGAAAAACCGGTGAAGAAAGCTTGCGAGCTACGTTAGTGGCTGGAGGACTAGCAGGAGTAGCTAGCTGGATTAGTTGTTATCCCTTGGATGTCGTAAAAACAAGATTGCAAGCTCAATCGATGTACCCTGTACCAAAATACACTGGAATTGTTGATTGCTTCAGGAGGAGTGTGAGGGAGGACGGGCATGGCGTGCTGTGGCGAGGACTAGGAACTGCTGTTTCTAGAGCGTTTCTTGTGAATGGGGCTATCTTTGCGGCTTATGAGGTTGCTATGAAGGGCCTAGGCAGCAGGGGAAGCGTGGTTCTAGCAGATAATGCAATCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

298

Amino Acids

31.83

Weight (kDa)

9.24

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	7 - 90	8.9e-14	Mitochondrial carrier protein
Mito_carr	PF00153	106 - 185	3.6e-24	Mitochondrial carrier protein
Mito_carr	PF00153	196 - 285	1.2e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79900
fragaria_vesca	FvH4_6g31430 FvH4_6g31440 FvH4_6g31440
malus_domestica	MD09G1211700.v1.1 MD17G1194000.v1.1
prunus_persica	Prupe.3G069700_v2.0.a1
pyrus_communis	pycom09g12890 pycom17g19990
rosa_chinensis	RchiOBHm_Chr2g0138231 RchiOBHm_Chr2g0138241
rosa_laevigata	RLG00000019727 RLG00000019728
rosa_multiflora	Rmu_sc0004576.1_g000030 Rmu_sc0004576.1_g000031 Rmu_sc0006570.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106390 Rroxscaffold_2G00106400
rosa_rugosa	Rorug02G0350000 Rorug02G0350100 Rorug02G0350200
rosa_samantha	Rh2AG396600 Rh2AG396700 Rh2BG409600 Rh2BG409800 Rh2CG383100 Rh2CG383200 Rh2DG418300 Rh2DG418500
rosa_wichuraiana	Rw2G032430 Rw2G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	81
AciI	CCGC	1 cut(s)	824
AclWI	GGATC	2 cut(s)	266, 279
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	2 cut(s)	374, 712
AfaI	GTAC	5 cut(s)	130, 529, 539, 692, 699
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgeI	ACCGGT	1 cut(s)	575
AgsI	TTSAA	1 cut(s)	120
AloI	GAACNNNNNNTCC	2 cut(s)	855, 887
Alw21I	GWGCWC	1 cut(s)	268
AlwI	GGATC	2 cut(s)	266, 279
Ama87I	CYCGRG	2 cut(s)	261, 559
AoxI	GGCC	4 cut(s)	169, 207, 415, 847
ApeKI	GCWGC	4 cut(s)	197, 394, 550, 855
ApoI	RAATTY	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	575
AspA2I	CCTAGG	1 cut(s)	850
AspS9I	GGNCC	3 cut(s)	170, 416, 847
AsuC2I	CCSGG	2 cut(s)	560, 561
AsuHPI	GGTGA	5 cut(s)	151, 352, 478, 548, 590
AsuNHI	GCTAGC	2 cut(s)	17, 629
AvaI	CYCGRG	2 cut(s)	261, 559
AvrII	CCTAGG	1 cut(s)	850
BaeGI	GKGCMC	1 cut(s)	84
BamHI	GGATCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	4 cut(s)	184, 381, 562, 867
BccI	CCATC	3 cut(s)	221, 283, 491
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	2 cut(s)	560, 561
BfaI	CTAG	7 cut(s)	18, 617, 630, 776, 792, 851, 875
BglI	GCCNNNNNGGC	1 cut(s)	414
BisI	GCNGC	5 cut(s)	198, 395, 551, 825, 856
BlnI	CCTAGG	1 cut(s)	850
BlsI	GCNGC	5 cut(s)	199, 396, 552, 826, 857
Bme1390I	CCNGG	2 cut(s)	560, 561
BmeT110I	CYCGRG	2 cut(s)	261, 559
BmgT120I	GGNCC	3 cut(s)	170, 416, 847
BmiI	GGNNCC	3 cut(s)	83, 273, 418
BmrFI	CCNGG	2 cut(s)	560, 561
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	490
BmtI	GCTAGC	2 cut(s)	21, 633
BmuI	ACTGGG	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	2 cut(s)	66, 630
Bpu10I	CCTNAGC	1 cut(s)	494
BpuMI	CCSGG	2 cut(s)	560, 561
Bsa29I	ATCGAT	1 cut(s)	686
BsaJI	CCNNGG	6 cut(s)	162, 204, 231, 559, 651, 850
BsaWI	WCCGGW	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	3 cut(s)	130, 365, 715
Bse3DI	GCAATG	2 cut(s)	60, 157
BseCI	ATCGAT	1 cut(s)	686
BseDI	CCNNGG	6 cut(s)	162, 204, 231, 559, 651, 850
BseGI	GGATG	3 cut(s)	505, 569, 661
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMI	GCAATG	2 cut(s)	60, 157
BseNI	ACTGG	3 cut(s)	130, 365, 715
BseRI	GAGGAG	1 cut(s)	748
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	4 cut(s)	184, 381, 562, 867
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	4 cut(s)	171, 209, 417, 849
BshNI	GGYRCC	1 cut(s)	81
BshTI	ACCGGT	1 cut(s)	575
BshVI	ATCGAT	1 cut(s)	686
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	2 cut(s)	261, 559
BsiSI	CCGG	2 cut(s)	560, 576
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	4 cut(s)	171, 209, 417, 849
BsoBI	CYCGRG	2 cut(s)	261, 559
Bsp1286I	GDGCHC	2 cut(s)	84, 268
Bsp143I	GATC	2 cut(s)	271, 357
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	1 cut(s)	824
BspANI	GGCC	4 cut(s)	171, 209, 417, 849
BspDI	ATCGAT	1 cut(s)	686
BspLI	GGNNCC	3 cut(s)	83, 273, 418
BspOI	GCTAGC	2 cut(s)	21, 633
BspPI	GGATC	2 cut(s)	266, 279
BspT107I	GGYRCC	1 cut(s)	81
BsrDI	GCAATG	2 cut(s)	60, 157
BsrFI	RCCGGY	1 cut(s)	575
BsrI	ACTGG	3 cut(s)	130, 365, 715
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	6 cut(s)	162, 204, 231, 559, 651, 850
BssMI	GATC	2 cut(s)	271, 357
BssT1I	CCWWGG	4 cut(s)	204, 231, 651, 850
Bst6I	CTCTTC	1 cut(s)	25
BstAPI	GCANNNNNTGC	2 cut(s)	760, 884
BstC8I	GCNNGC	6 cut(s)	19, 590, 594, 631, 678, 761
BstDEI	CTNAG	2 cut(s)	98, 494
BstDSI	CCRYGG	2 cut(s)	162, 231
BstF5I	GGATG	3 cut(s)	505, 569, 661
BstKTI	GATC	2 cut(s)	274, 360
BstMBI	GATC	2 cut(s)	271, 357
BstMWI	GCNNNNNNNGC	9 cut(s)	147, 206, 414, 626, 760, 821, 855, 864, 884
BstSCI	CCNGG	2 cut(s)	558, 559
BstSLI	GKGCMC	1 cut(s)	84
BstV1I	GCAGC	4 cut(s)	184, 381, 562, 867
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	686
BsuRI	GGCC	4 cut(s)	171, 209, 417, 849
BsuTUI	ATCGAT	1 cut(s)	686
BtgI	CCRYGG	2 cut(s)	162, 231
BtsCI	GGATG	3 cut(s)	505, 569, 661
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	6 cut(s)	19, 590, 594, 631, 678, 761
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	3 cut(s)	170, 416, 847
Cfr9I	CCCGGG	1 cut(s)	559
ClaI	ATCGAT	1 cut(s)	686
Csp6I	GTAC	5 cut(s)	129, 528, 538, 691, 698
CspAI	ACCGGT	1 cut(s)	575
CviAII	CATG	6 cut(s)	106, 232, 490, 512, 541, 755
CviQI	GTAC	5 cut(s)	129, 528, 538, 691, 698
DdeI	CTNAG	2 cut(s)	98, 494
DpnI	GATC	2 cut(s)	273, 359
DpnII	GATC	2 cut(s)	271, 357
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	266
Eco130I	CCWWGG	4 cut(s)	204, 231, 651, 850
Eco24I	GRGCYC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	266
Eco57I	CTGAAG	2 cut(s)	374, 712
Eco88I	CYCGRG	2 cut(s)	261, 559
EcoICRI	GAGCTC	1 cut(s)	266
EcoO109I	RGGNCCY	2 cut(s)	416, 847
EcoT14I	CCWWGG	4 cut(s)	204, 231, 651, 850
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	4 cut(s)	204, 231, 651, 850
FaeI	CATG	6 cut(s)	109, 235, 493, 515, 544, 758
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FatI	CATG	6 cut(s)	105, 231, 489, 511, 540, 754
FauNDI	CATATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	5 cut(s)	198, 395, 551, 825, 856
FokI	GGATG	3 cut(s)	512, 576, 668
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	5 cut(s)	198, 395, 551, 825, 856
FspBI	CTAG	7 cut(s)	18, 617, 630, 776, 792, 851, 875
GluI	GCNGC	5 cut(s)	198, 395, 551, 825, 856
GsuI	CTGGAG	2 cut(s)	66, 630
HaeIII	GGCC	4 cut(s)	171, 209, 417, 849
HapII	CCGG	2 cut(s)	560, 576
Hin1II	CATG	6 cut(s)	109, 235, 493, 515, 544, 758
HindIII	AAGCTT	1 cut(s)	586
HinfI	GANTC	1 cut(s)	102
HpaII	CCGG	2 cut(s)	560, 576
HphI	GGTGA	5 cut(s)	151, 352, 478, 548, 590
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	4 cut(s)	261, 269, 730, 792
HpyAV	CCTTC	4 cut(s)	161, 309, 446, 838
HpyCH4IV	ACGT	1 cut(s)	599
HpyCH4V	TGCA	6 cut(s)	109, 346, 397, 503, 676, 887
HpyF10VI	GCNNNNNNNGC	9 cut(s)	147, 206, 414, 626, 760, 821, 855, 864, 884
HpyF3I	CTNAG	2 cut(s)	98, 494
HpySE526I	ACGT	1 cut(s)	599
Hsp92II	CATG	6 cut(s)	109, 235, 493, 515, 544, 758
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	271, 357
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	4 cut(s)	184, 381, 562, 867
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	7 cut(s)	18, 617, 630, 776, 792, 851, 875
MaeII	ACGT	1 cut(s)	599
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	273, 359
MboI	GATC	2 cut(s)	271, 357
MboII	GAAGA	5 cut(s)	17, 42, 137, 380, 593
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	84, 268
MluCI	AATT	3 cut(s)	35, 72, 714
MseI	TTAA	1 cut(s)	479
MslI	CAYNNNNRTG	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	2 cut(s)	560, 576
MspR9I	CCNGG	2 cut(s)	560, 561
Mva1269I	GAATGC	1 cut(s)	141
MwoI	GCNNNNNNNGC	9 cut(s)	147, 206, 414, 626, 760, 821, 855, 864, 884
NciI	CCSGG	2 cut(s)	560, 561
NcoI	CCATGG	1 cut(s)	231
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	2 cut(s)	271, 357
NheI	GCTAGC	2 cut(s)	17, 629
NlaIII	CATG	6 cut(s)	109, 235, 493, 515, 544, 758
NlaIV	GGNNCC	3 cut(s)	83, 273, 418
NmuCI	GTSAC	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	2 cut(s)	170, 756
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	102
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	5 cut(s)	199, 396, 552, 826, 857
Psp124BI	GAGCTC	1 cut(s)	268
PspN4I	GGNNCC	3 cut(s)	83, 273, 418
PspPI	GGNCC	3 cut(s)	170, 416, 847
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	5 cut(s)	130, 529, 539, 692, 699
RsaNI	GTAC	5 cut(s)	129, 528, 538, 691, 698
RseI	CAYNNNNRTG	1 cut(s)	488
SacI	GAGCTC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	5 cut(s)	198, 395, 551, 825, 856
Sau3AI	GATC	2 cut(s)	271, 357
Sau96I	GGNCC	3 cut(s)	170, 416, 847
ScrFI	CCNGG	2 cut(s)	560, 561
SduI	GDGCHC	2 cut(s)	84, 268
SfaNI	GCATC	1 cut(s)	490
Sfr274I	CTCGAG	1 cut(s)	261
SlaI	CTCGAG	1 cut(s)	261
SmaI	CCCGGG	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	3 cut(s)	35, 72, 714
SsiI	CCGC	1 cut(s)	824
SspMI	CTAG	7 cut(s)	18, 617, 630, 776, 792, 851, 875
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	558, 559
StyI	CCWWGG	4 cut(s)	204, 231, 651, 850
TaiI	ACGT	1 cut(s)	602
TaqI	TCGA	2 cut(s)	262, 686
TasI	AATT	3 cut(s)	35, 72, 714
TatI	WGTACW	2 cut(s)	527, 537
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	4 cut(s)	197, 394, 550, 855
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	557, 857
TspGWI	ACGGA	2 cut(s)	179, 374
TspMI	CCCGGG	1 cut(s)	559
TspRI	CASTG	1 cut(s)	715
XapI	RAATTY	1 cut(s)	35
XbaI	TCTAGA	1 cut(s)	791
XhoI	CTCGAG	1 cut(s)	261
XmaI	CCCGGG	1 cut(s)	559
XmaJI	CCTAGG	1 cut(s)	850
XspI	CTAG	7 cut(s)	18, 617, 630, 776, 792, 851, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.