RLG00000019728

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004732
Physical Location & Seq
Forward (+)
56054536 .. 56057522
2987 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019728

Sequence Viewer

Length: 1122 bp
ATGGGTACAAAAACAATCACAGAAGCAATCACATGGGTGATCCGTGAGGTCTCTGATACAATTATGACCAATATGACTGATGGGGACTTGGGTCCAAAAGCATCACCTGGTCCAGTTGGCGGTCCCTCACTGCGGGTATGGGAAATGAAACGCTGGCCGTTTCCTTATAGGCACCTGCTCAATCCCCACAGAACGGAGAAGCCGGTGGCTTTTGTTTCGGTGCCCTTTGTGAAAGAGGAGAGAAAAGAGTTGATTTTTGGTGGAGAAAGAGGATGTGGAGGCATTGCTGGTATAATATCTGGTTATCCACTTGACACTCTTAGGATTTTGCAACAGAATTCAAAGAGTGGCTCTGCCTTTAACATTCTTCGCAATGTCATCTCCAAAGAAGGCCCTAGCGCCCTTTACAGGGGCATGGCTGCCCCCTTGGCATCCATTACACTTCAGAATGCTATGGTTTTCCAGTCATACGCCATTCTCTCTCGGGCTCTCGATCCATCAGTGTCCACTAAAGATCCTCCTTCTTACAAAGGTGTTGCTCTAGGAGGGTTTGGGGCAGGTGCTTTGCAGAGTCTAGTCCTCAGCCCAGTAGAACTCATAAAAATCCGGCTTCAGCTGCAAACCAAAACCCAAAAGGGGCCCAGAGAAGTTGCCAAAAGCATAATGAAAGCAGAGGGGGTAAGAGGATTATATAGGGGCCTGGGCATTACTATTCTTAGGGATGCACCAGCTCACGGTTTGTACTTTTCAACTTATGAGTATATGAGAGAGCAGCTTCATCCTGGCTGTAGAAAAACCGGTGAAGAGAGCTTACAAACAATGTTGGTAGCTGGAGGGCTAGCAGGAGTAGCTAGCTGGATTTGTTGTTATCCCTTGGATGTTGTAAAGACCAGATTACAGGCTCAATCTGCGTACCCTCCACCGAAATATACTGGCATAGTTGATTGCTTCAGAAAGAGTGTGAGAGAGGATGGTTATGCGGTCCTCTGGCGAGGACTAGGAACTGCTGTTTCGAGAGCGTTTCTGGTGAATGGTGCTATTTTTGCGGCTTATGAGATTGCTCTGAGATGCCTTCTCAGCAATGGAAGAATTCCAATAGAGAATGCAATGCCTGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

374

Amino Acids

40.63

Weight (kDa)

9.53

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 92 - 164 1.5e-10 Mitochondrial carrier protein
Mito_carr PF00153 180 - 259 5.3e-23 Mitochondrial carrier protein
Mito_carr PF00153 270 - 359 1e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 183, 548
Acc36I ACCTGC 2 cut(s) 183, 548
AccB1I GGYRCC 2 cut(s) 171, 220
AciI CCGC 4 cut(s) 120, 133, 980, 1046
AclWI GGATC 3 cut(s) 34, 488, 509
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 2 cut(s) 337, 1089
AcuI CTGAAG 3 cut(s) 428, 596, 934
AfaI GTAC 3 cut(s) 7, 743, 914
AfiI CCNNNNNNNGG 7 cut(s) 119, 132, 193, 408, 409, 636, 734
AgeI ACCGGT 1 cut(s) 797
AgsI TTSAA 2 cut(s) 342, 750
AjnI CCWGG 3 cut(s) 106, 699, 781
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 7 cut(s) 616, 731, 775, 810, 830, 851, 855
AluI AGCT 7 cut(s) 616, 731, 775, 810, 830, 851, 855
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 3 cut(s) 34, 488, 509
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 4 cut(s) 155, 391, 638, 697
ApaI GGGCCC 1 cut(s) 642
ApeKI GCWGC 3 cut(s) 419, 616, 772
ApoI RAATTY 2 cut(s) 337, 1089
AsiGI ACCGGT 1 cut(s) 797
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 8 cut(s) 92, 110, 122, 392, 638, 639, 697, 982
AsuHPI GGTGA 4 cut(s) 49, 96, 812, 1039
AsuNHI GCTAGC 2 cut(s) 838, 851
AvaI CYCGRG 1 cut(s) 483
AvaII GGWCC 4 cut(s) 92, 110, 122, 982
BaeGI GKGCMC 2 cut(s) 225, 642
BanI GGYRCC 2 cut(s) 171, 220
BanII GRGCYC 2 cut(s) 490, 642
BarI GAAGNNNNNNTAC 2 cut(s) 795, 827
BbvCI CCTCAGC 1 cut(s) 581
BbvI GCAGC 3 cut(s) 406, 603, 784
BccI CCATC 3 cut(s) 74, 505, 965
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 3 cut(s) 108, 701, 783
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 6 cut(s) 396, 542, 575, 839, 852, 998
BfmI CTRYAG 1 cut(s) 787
BfoI RGCGCY 1 cut(s) 402
BfuAI ACCTGC 2 cut(s) 183, 548
BglI GCCNNNNNGGC 1 cut(s) 428
BisI GCNGC 4 cut(s) 420, 617, 773, 1047
BlsI GCNGC 4 cut(s) 421, 618, 774, 1048
Bme1390I CCNGG 3 cut(s) 108, 701, 783
Bme18I GGWCC 4 cut(s) 92, 110, 122, 982
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 8 cut(s) 92, 110, 122, 392, 638, 639, 697, 982
BmiI GGNNCC 7 cut(s) 93, 124, 173, 222, 639, 640, 698
BmrFI CCNGG 3 cut(s) 108, 701, 783
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 4 cut(s) 110, 440, 712, 1058
BmtI GCTAGC 2 cut(s) 842, 855
BmuI ACTGGG 1 cut(s) 581
BoxI GACNNNNGTC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 852
Bpu10I CCTNAGC 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 3 cut(s) 426, 700, 873
BsaWI WCCGGW 1 cut(s) 797
Bsc4I CCNNNNNNNGG 7 cut(s) 119, 132, 193, 408, 409, 636, 734
Bse118I RCCGGY 2 cut(s) 202, 797
Bse1I ACTGG 4 cut(s) 113, 463, 587, 937
Bse3DI GCAATG 4 cut(s) 282, 379, 1087, 1113
BseBI CCWGG 3 cut(s) 108, 701, 783
BseDI CCNNGG 3 cut(s) 426, 700, 873
BseGI GGATG 6 cut(s) 278, 431, 727, 778, 883, 976
BseLI CCNNNNNNNGG 7 cut(s) 119, 132, 193, 408, 409, 636, 734
BseMI GCAATG 4 cut(s) 282, 379, 1087, 1113
BseMII CTCAG 3 cut(s) 595, 1055, 1090
BseNI ACTGG 4 cut(s) 113, 463, 587, 937
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 2 cut(s) 225, 642
BseXI GCAGC 3 cut(s) 406, 603, 784
BshFI GGCC 4 cut(s) 157, 393, 640, 699
BshNI GGYRCC 2 cut(s) 171, 220
BshTI ACCGGT 1 cut(s) 797
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 3 cut(s) 203, 607, 798
BslFI GGGAC 2 cut(s) 98, 108
BslI CCNNNNNNNGG 7 cut(s) 119, 132, 193, 408, 409, 636, 734
BsmAI GTCTC 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 98, 108
BsmI GAATGC 2 cut(s) 454, 1108
BsnI GGCC 4 cut(s) 157, 393, 640, 699
Bso31I GGTCTC 1 cut(s) 55
BsoBI CYCGRG 1 cut(s) 483
Bsp120I GGGCCC 1 cut(s) 638
Bsp1286I GDGCHC 3 cut(s) 225, 490, 642
Bsp143I GATC 3 cut(s) 39, 493, 514
BspACI CCGC 4 cut(s) 120, 133, 980, 1046
BspANI GGCC 4 cut(s) 157, 393, 640, 699
BspCNI CTCAG 3 cut(s) 594, 1056, 1089
BspLI GGNNCC 7 cut(s) 93, 124, 173, 222, 639, 640, 698
BspMI ACCTGC 2 cut(s) 183, 548
BspOI GCTAGC 2 cut(s) 842, 855
BspPI GGATC 3 cut(s) 34, 488, 509
BspT107I GGYRCC 2 cut(s) 171, 220
BspTNI GGTCTC 1 cut(s) 55
BsrDI GCAATG 4 cut(s) 282, 379, 1087, 1113
BsrFI RCCGGY 2 cut(s) 202, 797
BsrI ACTGG 4 cut(s) 113, 463, 587, 937
BssAI RCCGGY 2 cut(s) 202, 797
BssECI CCNNGG 3 cut(s) 426, 700, 873
BssMI GATC 3 cut(s) 39, 493, 514
BssT1I CCWWGG 2 cut(s) 426, 873
Bst2UI CCWGG 3 cut(s) 108, 701, 783
Bst4CI ACNGT 1 cut(s) 737
Bst6I CTCTTC 1 cut(s) 798
BstC8I GCNNGC 3 cut(s) 155, 840, 853
BstDEI CTNAG 5 cut(s) 320, 581, 716, 1064, 1076
BstF5I GGATG 6 cut(s) 278, 431, 727, 778, 883, 976
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 3 cut(s) 42, 496, 517
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 3 cut(s) 39, 493, 514
BstMWI GCNNNNNNNGC 6 cut(s) 428, 616, 848, 908, 1043, 1077
BstNI CCWGG 3 cut(s) 108, 701, 783
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 3 cut(s) 106, 699, 781
BstSFI CTRYAG 1 cut(s) 787
BstSLI GKGCMC 2 cut(s) 225, 642
BstV1I GCAGC 3 cut(s) 406, 603, 784
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 4 cut(s) 157, 393, 640, 699
BtsCI GGATG 6 cut(s) 278, 431, 727, 778, 883, 976
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 2 cut(s) 128, 507
BveI ACCTGC 2 cut(s) 183, 548
Cac8I GCNNGC 3 cut(s) 155, 840, 853
CfoI GCGC 1 cut(s) 401
Cfr10I RCCGGY 2 cut(s) 202, 797
Cfr13I GGNCC 8 cut(s) 92, 110, 122, 392, 638, 639, 697, 982
CsiI ACCWGGT 1 cut(s) 106
Csp6I GTAC 3 cut(s) 6, 742, 913
CspAI ACCGGT 1 cut(s) 797
CviAII CATG 2 cut(s) 33, 415
CviQI GTAC 3 cut(s) 6, 742, 913
DdeI CTNAG 5 cut(s) 320, 581, 716, 1064, 1076
DpnI GATC 3 cut(s) 41, 495, 516
DpnII GATC 3 cut(s) 39, 493, 514
EaeI YGGCCR 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Eco130I CCWWGG 2 cut(s) 426, 873
Eco24I GRGCYC 2 cut(s) 490, 642
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 4 cut(s) 92, 110, 122, 982
Eco57I CTGAAG 3 cut(s) 428, 596, 934
Eco88I CYCGRG 1 cut(s) 483
EcoO109I RGGNCCY 3 cut(s) 392, 638, 697
EcoRI GAATTC 2 cut(s) 337, 1089
EcoRII CCWGG 3 cut(s) 106, 699, 781
EcoT14I CCWWGG 2 cut(s) 426, 873
EcoT38I GRGCYC 2 cut(s) 490, 642
ErhI CCWWGG 2 cut(s) 426, 873
FaeI CATG 2 cut(s) 36, 418
FaqI GGGAC 2 cut(s) 98, 108
FatI CATG 2 cut(s) 32, 414
FauI CCCGC 1 cut(s) 126
Fnu4HI GCNGC 4 cut(s) 420, 617, 773, 1047
FokI GGATG 6 cut(s) 285, 418, 734, 765, 890, 983
FriOI GRGCYC 2 cut(s) 490, 642
Fsp4HI GCNGC 4 cut(s) 420, 617, 773, 1047
FspBI CTAG 6 cut(s) 396, 542, 575, 839, 852, 998
GlaI GCGC 1 cut(s) 400
GluI GCNGC 4 cut(s) 420, 617, 773, 1047
GsuI CTGGAG 1 cut(s) 852
HaeII RGCGCY 1 cut(s) 402
HaeIII GGCC 4 cut(s) 157, 393, 640, 699
HapII CCGG 3 cut(s) 203, 607, 798
HhaI GCGC 1 cut(s) 401
Hin1II CATG 2 cut(s) 36, 418
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HinfI GANTC 1 cut(s) 571
HpaII CCGG 3 cut(s) 203, 607, 798
HphI GGTGA 4 cut(s) 49, 96, 812, 1039
Hpy166II GTNNAC 1 cut(s) 507
Hpy188I TCNGA 4 cut(s) 55, 447, 953, 1065
Hpy188III TCNNGA 2 cut(s) 491, 1014
Hpy8I GTNNAC 1 cut(s) 507
HpyAV CCTTC 3 cut(s) 383, 531, 1082
HpyCH4III ACNGT 1 cut(s) 737
HpyCH4V TGCA 5 cut(s) 331, 568, 619, 725, 1106
HpyF10VI GCNNNNNNNGC 6 cut(s) 428, 616, 848, 908, 1043, 1077
HpyF3I CTNAG 5 cut(s) 320, 581, 716, 1064, 1076
Hsp92II CATG 2 cut(s) 36, 418
HspAI GCGC 1 cut(s) 399
Kzo9I GATC 3 cut(s) 39, 493, 514
Lsp1109I GCAGC 3 cut(s) 406, 603, 784
LweI GCATC 4 cut(s) 110, 440, 712, 1058
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 6 cut(s) 396, 542, 575, 839, 852, 998
MalI GATC 3 cut(s) 41, 495, 516
MboI GATC 3 cut(s) 39, 493, 514
MboII GAAGA 3 cut(s) 359, 815, 1098
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 3 cut(s) 225, 490, 642
MluCI AATT 3 cut(s) 60, 337, 1089
MlyI GAGTC 1 cut(s) 580
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 616
MspI CCGG 3 cut(s) 203, 607, 798
MspR9I CCNGG 3 cut(s) 108, 701, 783
Mva1269I GAATGC 2 cut(s) 454, 1108
MvaI CCWGG 3 cut(s) 108, 701, 783
MwoI GCNNNNNNNGC 6 cut(s) 428, 616, 848, 908, 1043, 1077
NdeII GATC 3 cut(s) 39, 493, 514
NheI GCTAGC 2 cut(s) 838, 851
NlaIII CATG 2 cut(s) 36, 418
NlaIV GGNNCC 7 cut(s) 93, 124, 173, 222, 639, 640, 698
OliI CACNNNNGTG 1 cut(s) 35
PaqCI CACCTGC 2 cut(s) 183, 548
PctI GAATGC 2 cut(s) 454, 1108
PinAI ACCGGT 1 cut(s) 797
PkrI GCNGC 4 cut(s) 421, 618, 774, 1048
PleI GAGTC 1 cut(s) 579
PpsI GAGTC 1 cut(s) 579
PshAI GACNNNNGTC 1 cut(s) 90
Psp6I CCWGG 3 cut(s) 106, 699, 781
PspGI CCWGG 3 cut(s) 106, 699, 781
PspN4I GGNNCC 7 cut(s) 93, 124, 173, 222, 639, 640, 698
PspOMI GGGCCC 1 cut(s) 638
PspPI GGNCC 8 cut(s) 92, 110, 122, 392, 638, 639, 697, 982
PsuI RGATCY 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 616
RsaI GTAC 3 cut(s) 7, 743, 914
RsaNI GTAC 3 cut(s) 6, 742, 913
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 4 cut(s) 420, 617, 773, 1047
Sau3AI GATC 3 cut(s) 39, 493, 514
Sau96I GGNCC 8 cut(s) 92, 110, 122, 392, 638, 639, 697, 982
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 3 cut(s) 108, 701, 783
SduI GDGCHC 3 cut(s) 225, 490, 642
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 4 cut(s) 110, 440, 712, 1058
SfcI CTRYAG 1 cut(s) 787
SinI GGWCC 4 cut(s) 92, 110, 122, 982
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 3 cut(s) 60, 337, 1089
SsiI CCGC 4 cut(s) 120, 133, 980, 1046
SspMI CTAG 6 cut(s) 396, 542, 575, 839, 852, 998
StyD4I CCNGG 3 cut(s) 106, 699, 781
StyI CCWWGG 2 cut(s) 426, 873
TaaI ACNGT 1 cut(s) 737
TaqI TCGA 2 cut(s) 492, 1013
TasI AATT 3 cut(s) 60, 337, 1089
TatI WGTACW 1 cut(s) 741
TauI GCSGC 1 cut(s) 1049
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 2 cut(s) 135, 507
TseI GCWGC 3 cut(s) 419, 616, 772
TspDTI ATGAA 3 cut(s) 161, 680, 767
TspGWI ACGGA 2 cut(s) 32, 209
TspRI CASTG 2 cut(s) 135, 507
VpaK11BI GGWCC 4 cut(s) 92, 110, 122, 982
XapI RAATTY 2 cut(s) 337, 1089
XspI CTAG 6 cut(s) 396, 542, 575, 839, 852, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.