AT1G80880

Pentatricopeptide repeat-containing protein At1g80880

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
30394651 .. 30397007
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80880.1

Sequence Viewer

Length: 1623 bp
ATGGCCGCGATCGTTGCCATTGGTAGGAAACTCGCGCGAACGCCACAATGGCGGATTGTTCAGCATCAATCTCTGCTACGTCGTGCAGTGTCGACGTCGTTTTCGAGCTCAGTTTCCCAAAATCATTCCTTCTCTTCAGCATTTCATCGAGCAGGTCATGTGCATTCTCAAGTTTTAAGCTATCTCCCACATTTTGCCTCTTCTAATCGCTTCTCCACCAAAACCATCTCCGAAACATTTGATATCAACTTAACAGCATTGGCTCCGTTAGAAAAGGGTCTGATTGATTTAATCAGACAGGTCTCTGAGCTGGAGTCAGAGGCGGATGCCATGGCTTCTCTGGAGGACTCATCATTTGATCTAAATCATGATTCTTTCTACTCCTTAATCTGGGAATTAAGAGATGAATGGAGGCTTGCCTTTCTAGCATTCAAATGGGGAGAGAAACGCGGCTGTGATGATCAGAAATCTTGTGATTTGATGATCTGGGTGTTGGGTAATCATCAAAAGTTCAACATTGCTTGGTGTTTGATCCGTGATATGTTTAATGTTTCAAAGGATACTAGAAAGGCCATGTTTCTCATGATGGACAGATATGCTGCTGCTAATGATACTAGCCAAGCTATTCGGACATTTGATATTATGGATAAGTTTAAACACACTCCTTATGATGAAGCATTTCAAGGATTGCTATGTGCATTGTGTAGACATGGCCACATTGAAAAAGCTGAAGAGTTCATGCTTGCAAGCAAAAAGCTCTTTCCGGTGGATGTTGAGGGATTCAACGTAATTCTTAATGGTTGGTGTAACATTTGGACTGATGTGACTGAAGCAAAGAGGATTTGGCGAGAGATGGGGAATTACTGTATCACGCCTAACAAGGACTCTTACAGTCACATGATCTCTTGCTTCTCTAAAGTTGGGAACCTTTTTGATTCTCTCAGGCTATACGATGAAATGAAGAAACGGGGATTGGCTCCAGGGATTGAAGTTTACAATTCCTTGGTTTATGTGTTGACCCGTGAGGATTGCTTTGATGAAGCTATGAAGCTTATGAAAAAGTTGAACGAGGAAGGATTAAAGCCAGATTCAGTGACCTACAACTCGATGATACGCCCCCTTTGTGAGGCTGGAAAGCTGGACGTAGCCAGGAATGTATTGGCAACCATGATTAGTGAGAACCTTAGTCCAACAGTTGATACATTTCATGCATTCCTTGAGGCTGTAAATTTCGAGAAAACTTTAGAGGTTTTAGGCCAAATGAAGATCTCTGATTTAGGTCCTACAGAAGAGACCTTTCTTCTTATTCTTGGAAAATTGTTCAAGGGAAAGCAACCAGAAAATGCTTTGAAGATCTGGGCAGAAATGGATCGTTTTGAGATAGTGGCTAATCCTGCTCTTTACTTGGCTACAATACAGGGCCTTTTGTCATGTGGGTGGCTTGAAAAGGCCAGAGAGATCTATTCAGAGATGAAATCAAAGGGGTTCGTAGGAAATCCTATGCTCCAGAAACTTCTTGAGGAGCAAAAGGTGAAGGGGGTCAGAAAAAGCAAGAGGATGAATCTTCAAAAAGTTGGTTCTCAGGAAGGCTACAAGGGTCAACGATCAGTAGACAGAAAATAA

Protein Analysis

540

Amino Acids

61.71

Weight (kDa)

7.91

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 280 - 338 3.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 292 - 336 1.5e-06 PPR repeat family
TPR_24 PF23276 294 - 385 9.1e-06 Fungal tetratrico peptide repeats
PPR PF01535 296 - 325 2.8e-06 PPR repeat
PPR_long PF17177 296 - 436 2.4e-12 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 327 - 375 2.7e-10 PPR repeat family
PPR_3 PF13812 350 - 409 2.2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 359 - 390 6.1e-09 PPR repeat
PPR_2 PF13041 362 - 406 1.1e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 143
AccI GTMKAC 3 cut(s) 92, 706, 1611
AccII CGCG 4 cut(s) 8, 35, 37, 450
AciI CCGC 4 cut(s) 6, 52, 323, 450
AclWI GGATC 2 cut(s) 526, 1377
AcoI YGGCCR 2 cut(s) 3, 712
AcsI RAATTY 1 cut(s) 1228
AcuI CTGAAG 3 cut(s) 120, 750, 849
AcyI GRCGYC 1 cut(s) 95
AfiI CCNNNNNNNGG 3 cut(s) 24, 390, 1126
AjnI CCWGG 2 cut(s) 979, 1148
AjuI GAANNNNNNNTTGG 2 cut(s) 956, 988
AluBI AGCT 9 cut(s) 108, 180, 310, 623, 728, 757, 1043, 1051, 1138
AluI AGCT 9 cut(s) 108, 180, 310, 623, 728, 757, 1043, 1051, 1138
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 307, 1286
AlwI GGATC 2 cut(s) 526, 1377
AoxI GGCC 6 cut(s) 3, 570, 712, 1255, 1420, 1449
ApeKI GCWGC 2 cut(s) 599, 602
ApoI RAATTY 1 cut(s) 1228
ArsI GACNNNNNNTTYG 4 cut(s) 85, 117, 338, 370
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 1280, 1420
AsuHPI GGTGA 1 cut(s) 1543
AvaII GGWCC 1 cut(s) 1280
BalI TGGCCA 1 cut(s) 714
BanII GRGCYC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 586, 589
BccI CCATC 3 cut(s) 233, 580, 847
BciT130I CCWGG 2 cut(s) 981, 1150
BciVI GTATCC 1 cut(s) 553
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 307, 1286
BfaI CTAG 3 cut(s) 425, 564, 615
BfmI CTRYAG 1 cut(s) 1284
BfuAI ACCTGC 1 cut(s) 143
BfuI GTATCC 1 cut(s) 553
BglI GCCNNNNNGGC 1 cut(s) 49
BglII AGATCT 3 cut(s) 1266, 1353, 1458
BisI GCNGC 4 cut(s) 6, 451, 600, 603
BlsI GCNGC 4 cut(s) 7, 452, 601, 604
Bme1390I CCNGG 2 cut(s) 981, 1150
Bme18I GGWCC 1 cut(s) 1280
BmgT120I GGNCC 2 cut(s) 1280, 1420
BmiI GGNNCC 3 cut(s) 264, 926, 978
BmrFI CCNGG 2 cut(s) 981, 1150
BmsI GCATC 2 cut(s) 73, 316
BpmI CTGGAG 4 cut(s) 332, 362, 963, 1490
BpuEI CTTGAG 3 cut(s) 153, 1238, 1538
BsaBI GATNNNNATC 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 95
BsaI GGTCTC 2 cut(s) 307, 1286
BsaJI CCNNGG 3 cut(s) 330, 980, 1002
BsaWI WCCGGW 1 cut(s) 763
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 390, 1126
Bse3DI GCAATG 1 cut(s) 516
Bse8I GATNNNNATC 1 cut(s) 363
BseBI CCWGG 2 cut(s) 981, 1150
BseDI CCNNGG 3 cut(s) 330, 980, 1002
BseGI GGATG 3 cut(s) 331, 775, 1563
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 3 cut(s) 24, 390, 1126
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 4 cut(s) 123, 297, 955, 1595
BseRI GAGGAG 1 cut(s) 1535
BseXI GCAGC 2 cut(s) 586, 589
BsgI GTGCAG 1 cut(s) 105
Bsh1236I CGCG 4 cut(s) 8, 35, 37, 450
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 6 cut(s) 5, 572, 714, 1257, 1422, 1451
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 764
BslI CCNNNNNNNGG 3 cut(s) 24, 390, 1126
BsmAI GTCTC 2 cut(s) 307, 1286
BsmI GAATGC 3 cut(s) 163, 428, 1211
BsnI GGCC 6 cut(s) 5, 572, 714, 1257, 1422, 1451
Bso31I GGTCTC 2 cut(s) 307, 1286
Bsp1286I GDGCHC 1 cut(s) 110
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 4 cut(s) 6, 52, 323, 450
BspANI GGCC 6 cut(s) 5, 572, 714, 1257, 1422, 1451
BspCNI CTCAG 4 cut(s) 122, 298, 954, 1594
BspFNI CGCG 4 cut(s) 8, 35, 37, 450
BspHI TCATGA 2 cut(s) 367, 582
BspLI GGNNCC 3 cut(s) 264, 926, 978
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 2 cut(s) 526, 1377
BspTNI GGTCTC 2 cut(s) 307, 1286
BsrDI GCAATG 1 cut(s) 516
BssECI CCNNGG 3 cut(s) 330, 980, 1002
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 2 cut(s) 330, 1002
Bst2UI CCWGG 2 cut(s) 981, 1150
Bst4CI ACNGT 3 cut(s) 866, 893, 1195
Bst6I CTCTTC 4 cut(s) 139, 205, 726, 1284
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 3 cut(s) 417, 744, 748
BstDEI CTNAG 5 cut(s) 109, 306, 941, 1184, 1581
BstDSI CCRYGG 1 cut(s) 330
BstENI CCTNNNNNAGG 1 cut(s) 1124
BstF5I GGATG 3 cut(s) 331, 775, 1563
BstFNI CGCG 4 cut(s) 8, 35, 37, 450
BstHHI GCGC 1 cut(s) 37
BstMAI GTCTC 2 cut(s) 307, 1286
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 4 cut(s) 14, 49, 425, 1394
BstNI CCWGG 2 cut(s) 981, 1150
BstSCI CCNGG 2 cut(s) 979, 1148
BstSFI CTRYAG 1 cut(s) 1284
BstUI CGCG 4 cut(s) 8, 35, 37, 450
BstV1I GCAGC 2 cut(s) 586, 589
BstX2I RGATCY 3 cut(s) 1266, 1353, 1458
BstYI RGATCY 3 cut(s) 1266, 1353, 1458
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 6 cut(s) 5, 572, 714, 1257, 1422, 1451
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 3 cut(s) 331, 775, 1563
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 93, 1098
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 3 cut(s) 417, 744, 748
CciI TCATGA 2 cut(s) 367, 582
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 1280, 1420
DdeI CTNAG 5 cut(s) 109, 306, 941, 1184, 1581
DraI TTTAAA 1 cut(s) 655
EaeI YGGCCR 2 cut(s) 3, 712
Eam1104I CTCTTC 4 cut(s) 139, 205, 726, 1284
EarI CTCTTC 4 cut(s) 139, 205, 726, 1284
EciI GGCGGA 2 cut(s) 67, 338
Ecl136II GAGCTC 1 cut(s) 108
Eco130I CCWWGG 2 cut(s) 330, 1002
Eco24I GRGCYC 1 cut(s) 110
Eco31I GGTCTC 2 cut(s) 307, 1286
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 1280
Eco53kI GAGCTC 1 cut(s) 108
Eco57I CTGAAG 3 cut(s) 120, 750, 849
EcoICRI GAGCTC 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 1124
EcoO109I RGGNCCY 2 cut(s) 1280, 1420
EcoRII CCWGG 2 cut(s) 979, 1148
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 330, 1002
EcoT22I ATGCAT 1 cut(s) 1213
EcoT38I GRGCYC 1 cut(s) 110
ErhI CCWWGG 2 cut(s) 330, 1002
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 3 cut(s) 92, 706, 1611
Fnu4HI GCNGC 4 cut(s) 6, 451, 600, 603
FokI GGATG 3 cut(s) 338, 782, 1570
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 4 cut(s) 6, 451, 600, 603
FspBI CTAG 3 cut(s) 425, 564, 615
GlaI GCGC 1 cut(s) 36
GluI GCNGC 4 cut(s) 6, 451, 600, 603
GsuI CTGGAG 4 cut(s) 332, 362, 963, 1490
HaeIII GGCC 6 cut(s) 5, 572, 714, 1257, 1422, 1451
HapII CCGG 1 cut(s) 764
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 95
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 3 cut(s) 93, 1017, 1601
HindII GTYRAC 3 cut(s) 93, 1017, 1601
HindIII AAGCTT 1 cut(s) 1049
HinfI GANTC 8 cut(s) 314, 347, 371, 780, 884, 935, 1088, 1561
HpaII CCGG 1 cut(s) 764
HphI GGTGA 1 cut(s) 1543
Hpy166II GTNNAC 6 cut(s) 93, 707, 994, 1017, 1601, 1612
Hpy188III TCNNGA 7 cut(s) 341, 368, 583, 1234, 1507, 1517, 1583
Hpy8I GTNNAC 6 cut(s) 93, 707, 994, 1017, 1601, 1612
Hpy99I CGWCG 3 cut(s) 84, 97, 100
HpyAV CCTTC 4 cut(s) 139, 1067, 1528, 1580
HpyCH4III ACNGT 3 cut(s) 866, 893, 1195
HpyCH4IV ACGT 4 cut(s) 79, 95, 786, 1143
HpyCH4V TGCA 5 cut(s) 86, 163, 698, 746, 1211
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 49, 425, 1394
HpyF3I CTNAG 5 cut(s) 109, 306, 941, 1184, 1581
HpySE526I ACGT 4 cut(s) 79, 95, 786, 1143
Hsp92I GRCGYC 1 cut(s) 95
HspAI GCGC 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 460
LmnI GCTCC 4 cut(s) 268, 982, 1509, 1522
Lsp1109I GCAGC 2 cut(s) 586, 589
LweI GCATC 2 cut(s) 73, 316
MaeI CTAG 3 cut(s) 425, 564, 615
MaeII ACGT 4 cut(s) 79, 95, 786, 1143
MaeIII GTNAC 4 cut(s) 806, 823, 893, 1093
MboII GAAGA 9 cut(s) 126, 192, 743, 973, 1276, 1292, 1301, 1363, 1556
MflI RGATCY 3 cut(s) 1266, 1353, 1458
MhlI GDGCHC 1 cut(s) 110
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 6 cut(s) 395, 789, 859, 997, 1228, 1316
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 3 cut(s) 323, 341, 878
MmeI TCCRAC 1 cut(s) 1214
Mox20I TGGCCA 1 cut(s) 714
Mph1103I ATGCAT 1 cut(s) 1213
MroXI GAANNNNTTC 1 cut(s) 678
MscI TGGCCA 1 cut(s) 714
MseI TTAA 9 cut(s) 176, 251, 290, 386, 398, 546, 654, 795, 1079
MslI CAYNNNNRTG 2 cut(s) 433, 1435
Msp20I TGGCCA 1 cut(s) 714
MspI CCGG 1 cut(s) 764
MspR9I CCNGG 2 cut(s) 981, 1150
MssI GTTTAAAC 1 cut(s) 655
Mva1269I GAATGC 3 cut(s) 163, 428, 1211
MvaI CCWGG 2 cut(s) 981, 1150
MvnI CGCG 4 cut(s) 8, 35, 37, 450
MwoI GCNNNNNNNGC 4 cut(s) 14, 49, 425, 1394
NcoI CCATGG 1 cut(s) 330
NlaIV GGNNCC 3 cut(s) 264, 926, 978
NmuCI GTSAC 3 cut(s) 823, 893, 1093
NsiI ATGCAT 1 cut(s) 1213
PagI TCATGA 2 cut(s) 367, 582
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PctI GAATGC 3 cut(s) 163, 428, 1211
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 5 cut(s) 371, 780, 935, 1088, 1561
PkrI GCNGC 4 cut(s) 7, 452, 601, 604
Ple19I CGATCG 1 cut(s) 12
PleI GAGTC 3 cut(s) 322, 341, 878
PmeI GTTTAAAC 1 cut(s) 655
PpsI GAGTC 3 cut(s) 322, 341, 878
PpuMI RGGWCCY 1 cut(s) 1280
Psp124BI GAGCTC 1 cut(s) 110
Psp5II RGGWCCY 1 cut(s) 1280
Psp6I CCWGG 2 cut(s) 979, 1148
PspGI CCWGG 2 cut(s) 979, 1148
PspN4I GGNNCC 3 cut(s) 264, 926, 978
PspPI GGNCC 2 cut(s) 1280, 1420
PspPPI RGGWCCY 1 cut(s) 1280
PsuI RGATCY 3 cut(s) 1266, 1353, 1458
PvuI CGATCG 1 cut(s) 12
RseI CAYNNNNRTG 2 cut(s) 433, 1435
SacI GAGCTC 1 cut(s) 110
SalI GTCGAC 1 cut(s) 91
SaqAI TTAA 9 cut(s) 176, 251, 290, 386, 398, 546, 654, 795, 1079
SatI GCNGC 4 cut(s) 6, 451, 600, 603
Sau96I GGNCC 2 cut(s) 1280, 1420
SchI GAGTC 3 cut(s) 323, 341, 878
ScrFI CCNGG 2 cut(s) 981, 1150
SduI GDGCHC 1 cut(s) 110
SfaNI GCATC 2 cut(s) 73, 316
SfcI CTRYAG 1 cut(s) 1284
SinI GGWCC 1 cut(s) 1280
SmiMI CAYNNNNRTG 2 cut(s) 433, 1435
SmlI CTYRAG 3 cut(s) 168, 1217, 1517
SmoI CTYRAG 3 cut(s) 168, 1217, 1517
Sse9I AATT 6 cut(s) 395, 789, 859, 997, 1228, 1316
SsiI CCGC 4 cut(s) 6, 52, 323, 450
SspMI CTAG 3 cut(s) 425, 564, 615
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 979, 1148
StyI CCWWGG 2 cut(s) 330, 1002
TaaI ACNGT 3 cut(s) 866, 893, 1195
TaiI ACGT 4 cut(s) 82, 98, 789, 1146
TaqI TCGA 5 cut(s) 92, 104, 148, 1106, 1233
TasI AATT 6 cut(s) 395, 789, 859, 997, 1228, 1316
TauI GCSGC 2 cut(s) 8, 453
TfiI GAWTC 5 cut(s) 371, 780, 935, 1088, 1561
Tru1I TTAA 9 cut(s) 176, 251, 290, 386, 398, 546, 654, 795, 1079
Tru9I TTAA 9 cut(s) 176, 251, 290, 386, 398, 546, 654, 795, 1079
TscAI CASTG 2 cut(s) 93, 1098
TseFI GTSAC 3 cut(s) 823, 893, 1093
TseI GCWGC 2 cut(s) 599, 602
Tsp45I GTSAC 3 cut(s) 823, 893, 1093
TspGWI ACGGA 2 cut(s) 255, 524
TspRI CASTG 2 cut(s) 93, 1098
VpaK11BI GGWCC 1 cut(s) 1280
XagI CCTNNNNNAGG 1 cut(s) 1124
XapI RAATTY 1 cut(s) 1228
XcmI CCANNNNNNNNNTGG 2 cut(s) 337, 1156
XmiI GTMKAC 3 cut(s) 92, 706, 1611
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 3 cut(s) 425, 564, 615
ZraI GACGTC 1 cut(s) 96
Zsp2I ATGCAT 1 cut(s) 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.