Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007278

Physical Location & Seq

Genomic Coordinates Reverse (-)

36358073 .. 36362020

Gene Structure 3948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGGCACTTCCCTCCATAGCAAGAAGGCTACGCACTAAGCACCCCTTCTGCCTATCACTCACTCTACTCCACCACCACCACCCCATCTCTAACTCACCCTATTCTTCACTTTCTCTCCACCCCCATCTCTCTCAGCCATTTCATCCAACATCTGTCGTTCCATCCCAAACCCCTTGCCATTTCTCTACTCTCCGACCCTTCTCCGCCGAAATCCCCCACCACCCATTGGGCTTCAATGGCCAGCGTTTCAACACAGACCACTCCCACAACTTGGGTCTCACCCAGTTTCTTGAATTGCTTACAAGTACGGCCGCTTTGGCCTCTGAAGCCGAGGCCATGGCTTTTCTCGACGAGTCGGGCGTCGAGGCGAAGCGAGATACGGTCTTTCAGGCGATTTGGGAGCTGAGGGGAGATTGGAAGTTGGCGTTTTTGGGTTTCAAATGGGGTGAGAAGTGGGGCTGTTGCGATGAAGAGGCGTGTAGTTTGATGGTTTGGGTTTTGGGGAGTCATAGAAAGTTTACTACTGCTTGGTGTTTGATACGGGACTTGAATCAGGCTTTGATCGATACGCGCCGTGCAATGCTTATAATGATTGATAGATATGCATCTGCAAATCATCCAAGTAAGGCCATTAAGACATTTCAGATAATGGAGAAGTTCAGGTTGAGCCCTGATCAAGAAGCATTCCACATCCTCTTGAATGCACTTTGTAAAAATGGAAACATGGAGGAAGCTGAAGAATTCATGCTTTTAAGTAGGAAGTTCTTCCCACTGGAGGTCGAGGGCTTTAACATTGTTCTCAATGGGTGGTGTAACATATCTGTGGATGTATATCAAGCCAAGAGAGTTTGGAGAGAAATGTCAAAATACTGTATTACACCAGACGCAACTTCTTATACACACATGATTTCCTGCTTCTCAAAAGTTGGGAATCTTTTCGACTCCCTTAGACTATATGGTGAAATGAAGAAAAGGGATTGGGTTCCTGGTCTCAAGGTTTACAATTCCTTAATTTATGTACTAACCCGTGAAAATTGCTTTAAGGAAGCACTCAAAGTACTGGACAAAGTGAAAGAAATTGGTTTGCAGCCAGATGCTACCACCTATAACTCAATGATAGGTCCTTTATGTGAATCAAAGAAGCTAGAGGAGGCTCAACAGATGCTGAGTTCTATGATAAATGATAACCTCAGCCCAACCATAGAGACTTACCATGCATTTCTGCAGAGTCCAGGTTCAAAGGCAACTGTTGAAGTTCTTAATCGAATGAAGAAAGCTAATTTAGGTCCTAATGGCAATACCTTCCTTATGATTCTTGAAAAGTTCTTTATATTAGAACAACCTGGGAAGGCATTGGAGATTTGGAATGAAATGAAGAACTATGGAGTAGTGCCTGATTCCACACATTACACCTCTATGGTACAGGGGCTGGCAACTTGTGGATTGTTAACGATGGCCAAGGAACTTTTGGCTGAGATGACGTCAAATGGCATTCCAGAAGATCCAAAGCTTAAGAAGCTCTTGAAGAAGCCAATTGGAGGTAGTGTTAAAGGGAAACGGAGAGTCAGACAAGTCAACCAAGCAAAAAGGATTAATCTAAAGCAAGACAGGGTTGTGAGATTGAGAAGTCCACATCAGTCAAGAGAGAAGAAGAAATCAAGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

555

Amino Acids

63.15

Weight (kDa)

9.09

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	196 - 238	4.9e-07	PPR repeat family
PPR_2	PF13041	262 - 308	4.8e-06	PPR repeat family
PPR_3	PF13812	282 - 340	6.5e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	298 - 424	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	332 - 377	4.3e-09	PPR repeat family
PPR_3	PF13812	352 - 409	1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	361 - 392	8.7e-07	PPR repeat
PPR_2	PF13041	364 - 408	4.1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80880 AT1G80880 AT1G80880
fragaria_vesca	FvH4_6g28510 FvH4_6g28510
malus_domestica	MD17G1224000.v1.1
prunus_persica	Prupe.3G099700_v2.0.a1 Prupe.3G099700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0132781
rosa_laevigata	RLG00000019275 RLG00000019279 RLG00000019280 RLG00000019283
rosa_multiflora	Rmu_co8097930.1_g000001 Rmu_ssc0000074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111670
rosa_rugosa	Rorug02G0307400 Rorug02G0307500 Rorug02G0307600 Rorug02G0307700
rosa_samantha	Rh2AG360100 Rh2BG366000 Rh2CG343400 Rh2DG383000
rosa_wichuraiana	Rw2G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AatII	GACGTC	1 cut(s)	1484
AccB7I	CCANNNNNTGG	2 cut(s)	226, 271
AccII	CGCG	1 cut(s)	571
AciI	CCGC	2 cut(s)	204, 312
AclWI	GGATC	1 cut(s)	1496
AcoI	YGGCCR	3 cut(s)	238, 309, 1455
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	2 cut(s)	345, 756
AcyI	GRCGYC	2 cut(s)	360, 1481
AfaI	GTAC	4 cut(s)	307, 1020, 1059, 1422
AfiI	CCNNNNNNNGG	4 cut(s)	226, 271, 775, 1538
AflII	CTTAAG	1 cut(s)	1511
AjnI	CCWGG	3 cut(s)	985, 1231, 1342
AluBI	AGCT	6 cut(s)	403, 734, 1144, 1277, 1510, 1519
AluI	AGCT	6 cut(s)	403, 734, 1144, 1277, 1510, 1519
Alw26I	GTCTC	3 cut(s)	281, 995, 1199
AlwI	GGATC	1 cut(s)	1496
AlwNI	CAGNNNCTG	2 cut(s)	1165, 1429
AoxI	GGCC	6 cut(s)	238, 309, 318, 333, 627, 1455
ApeKI	GCWGC	1 cut(s)	1087
ApoI	RAATTY	1 cut(s)	740
AseI	ATTAAT	1 cut(s)	1593
Asp700I	GAANNNNTTC	2 cut(s)	764, 935
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	2 cut(s)	1121, 1286
AsuHPI	GGTGA	4 cut(s)	87, 271, 458, 971
AvaII	GGWCC	2 cut(s)	1121, 1286
BalI	TGGCCA	2 cut(s)	240, 1457
BanII	GRGCYC	1 cut(s)	671
BbvCI	CCTCAGC	2 cut(s)	404, 1190
BbvI	GCAGC	1 cut(s)	1099
BccI	CCATC	5 cut(s)	92, 132, 169, 481, 1447
BceAI	ACGGC	2 cut(s)	324, 558
BciT130I	CCWGG	3 cut(s)	987, 1233, 1344
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	3 cut(s)	281, 995, 1199
BfaI	CTAG	1 cut(s)	1145
BfmI	CTRYAG	1 cut(s)	1223
BfrI	CTTAAG	1 cut(s)	1511
BglI	GCCNNNNNGGC	1 cut(s)	317
BisI	GCNGC	2 cut(s)	312, 1088
BlsI	GCNGC	2 cut(s)	313, 1089
BmcAI	AGTACT	1 cut(s)	1059
Bme1390I	CCNGG	3 cut(s)	987, 1233, 1344
Bme18I	GGWCC	2 cut(s)	1121, 1286
BmgT120I	GGNCC	2 cut(s)	1121, 1286
BmiI	GGNNCC	1 cut(s)	984
BmrFI	CCNGG	3 cut(s)	987, 1233, 1344
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	3 cut(s)	614, 1084, 1152
BmuI	ACTGGG	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	794
Bpu10I	CCTNAGC	2 cut(s)	404, 1190
BpuEI	CTTGAG	1 cut(s)	977
Bsa29I	ATCGAT	1 cut(s)	564
BsaBI	GATNNNNATC	2 cut(s)	604, 831
BsaHI	GRCGYC	2 cut(s)	360, 1481
BsaI	GGTCTC	2 cut(s)	281, 995
BsaJI	CCNNGG	4 cut(s)	330, 336, 1343, 1458
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 1530, 1560
Bsc4I	CCNNNNNNNGG	4 cut(s)	226, 271, 775, 1538
Bse1I	ACTGG	3 cut(s)	283, 777, 1065
Bse3DI	GCAATG	1 cut(s)	585
Bse8I	GATNNNNATC	2 cut(s)	604, 831
BseBI	CCWGG	3 cut(s)	987, 1233, 1344
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	4 cut(s)	330, 336, 1343, 1458
BseGI	GGATG	5 cut(s)	142, 161, 616, 690, 832
BseJI	GATNNNNATC	2 cut(s)	604, 831
BseLI	CCNNNNNNNGG	4 cut(s)	226, 271, 775, 1538
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	5 cut(s)	146, 395, 1157, 1204, 1464
BseNI	ACTGG	3 cut(s)	283, 777, 1065
BseRI	GAGGAG	1 cut(s)	1163
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	1099
Bsh1236I	CGCG	1 cut(s)	571
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	6 cut(s)	240, 311, 320, 335, 629, 1457
BshVI	ATCGAT	1 cut(s)	564
BsiEI	CGRYCG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	4 cut(s)	226, 271, 775, 1538
BsmAI	GTCTC	3 cut(s)	281, 995, 1199
BsmFI	GGGAC	1 cut(s)	557
BsmI	GAATGC	3 cut(s)	683, 706, 1491
BsnI	GGCC	6 cut(s)	240, 311, 320, 335, 629, 1457
Bso31I	GGTCTC	2 cut(s)	281, 995
Bsp1286I	GDGCHC	1 cut(s)	671
Bsp143I	GATC	3 cut(s)	561, 673, 1501
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	2 cut(s)	204, 312
BspANI	GGCC	6 cut(s)	240, 311, 320, 335, 629, 1457
BspCNI	CTCAG	5 cut(s)	145, 396, 1158, 1203, 1465
BspDI	ATCGAT	1 cut(s)	564
BspFNI	CGCG	1 cut(s)	571
BspLI	GGNNCC	1 cut(s)	984
BspMAI	CTGCAG	1 cut(s)	1227
BspPI	GGATC	1 cut(s)	1496
BspTI	CTTAAG	1 cut(s)	1511
BspTNI	GGTCTC	2 cut(s)	281, 995
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	3 cut(s)	283, 777, 1065
BssECI	CCNNGG	4 cut(s)	330, 336, 1343, 1458
BssMI	GATC	3 cut(s)	561, 673, 1501
BssNI	GRCGYC	2 cut(s)	360, 1481
BssT1I	CCWWGG	2 cut(s)	336, 1458
Bst2UI	CCWGG	3 cut(s)	987, 1233, 1344
Bst4CI	ACNGT	3 cut(s)	382, 872, 1249
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	2 cut(s)	360, 1481
BstAFI	CTTAAG	1 cut(s)	1511
BstC8I	GCNNGC	2 cut(s)	242, 1431
BstDEI	CTNAG	7 cut(s)	36, 132, 404, 947, 1166, 1190, 1473
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	5 cut(s)	142, 161, 616, 690, 832
BstFNI	CGCG	1 cut(s)	571
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	3 cut(s)	564, 676, 1504
BstMAI	GTCTC	3 cut(s)	281, 995, 1199
BstMBI	GATC	3 cut(s)	561, 673, 1501
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 317, 326, 1516
BstNI	CCWGG	3 cut(s)	987, 1233, 1344
BstSCI	CCNGG	3 cut(s)	985, 1231, 1342
BstSFI	CTRYAG	1 cut(s)	1223
BstUI	CGCG	1 cut(s)	571
BstV1I	GCAGC	1 cut(s)	1099
BstX2I	RGATCY	1 cut(s)	1501
BstYI	RGATCY	1 cut(s)	1501
BstZI	CGGCCG	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	564
BsuRI	GGCC	6 cut(s)	240, 311, 320, 335, 629, 1457
BsuTUI	ATCGAT	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	5 cut(s)	142, 161, 616, 690, 832
BtsIMutI	CAGTG	1 cut(s)	770
Cac8I	GCNNGC	2 cut(s)	242, 1431
CaiI	CAGNNNCTG	2 cut(s)	1165, 1429
CfoI	GCGC	1 cut(s)	573
Cfr13I	GGNCC	2 cut(s)	1121, 1286
ClaI	ATCGAT	1 cut(s)	564
CseI	GACGC	2 cut(s)	349, 893
Csp6I	GTAC	4 cut(s)	306, 1019, 1058, 1421
CviAII	CATG	5 cut(s)	337, 724, 745, 904, 1214
CviQI	GTAC	4 cut(s)	306, 1019, 1058, 1421
DdeI	CTNAG	7 cut(s)	36, 132, 404, 947, 1166, 1190, 1473
DpnI	GATC	3 cut(s)	563, 675, 1503
DpnII	GATC	3 cut(s)	561, 673, 1501
EaeI	YGGCCR	3 cut(s)	238, 309, 1455
EagI	CGGCCG	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
EciI	GGCGGA	1 cut(s)	193
EclXI	CGGCCG	1 cut(s)	309
Eco130I	CCWWGG	2 cut(s)	336, 1458
Eco24I	GRGCYC	1 cut(s)	671
Eco31I	GGTCTC	2 cut(s)	281, 995
Eco47I	GGWCC	2 cut(s)	1121, 1286
Eco52I	CGGCCG	1 cut(s)	309
Eco57I	CTGAAG	2 cut(s)	345, 756
EcoO109I	RGGNCCY	2 cut(s)	1121, 1286
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	3 cut(s)	985, 1231, 1342
EcoT14I	CCWWGG	2 cut(s)	336, 1458
EcoT22I	ATGCAT	2 cut(s)	607, 1219
EcoT38I	GRGCYC	1 cut(s)	671
ErhI	CCWWGG	2 cut(s)	336, 1458
FaeI	CATG	5 cut(s)	340, 727, 748, 907, 1217
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 1505, 1537
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	5 cut(s)	336, 723, 744, 903, 1213
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	2 cut(s)	312, 1088
FokI	GGATG	5 cut(s)	129, 148, 603, 677, 839
FriOI	GRGCYC	1 cut(s)	671
Fsp4HI	GCNGC	2 cut(s)	312, 1088
FspBI	CTAG	1 cut(s)	1145
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	2 cut(s)	312, 1088
GsuI	CTGGAG	1 cut(s)	794
HaeIII	GGCC	6 cut(s)	240, 311, 320, 335, 629, 1457
HgaI	GACGC	2 cut(s)	349, 893
HhaI	GCGC	1 cut(s)	573
Hin1I	GRCGYC	2 cut(s)	360, 1481
Hin1II	CATG	5 cut(s)	340, 727, 748, 907, 1217
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HincII	GTYRAC	2 cut(s)	1449, 1576
HindII	GTYRAC	2 cut(s)	1449, 1576
HindIII	AAGCTT	1 cut(s)	1508
HpaI	GTTAAC	1 cut(s)	1449
HphI	GGTGA	4 cut(s)	87, 271, 458, 971
Hpy166II	GTNNAC	5 cut(s)	519, 1000, 1449, 1576, 1631
Hpy188I	TCNGA	4 cut(s)	194, 325, 645, 1568
Hpy188III	TCNNGA	8 cut(s)	290, 347, 677, 697, 1316, 1496, 1522, 1641
Hpy8I	GTNNAC	5 cut(s)	519, 1000, 1449, 1576, 1631
Hpy99I	CGWCG	2 cut(s)	353, 365
HpyAV	CCTTC	5 cut(s)	18, 55, 208, 1312, 1342
HpyCH4III	ACNGT	3 cut(s)	382, 872, 1249
HpyCH4IV	ACGT	1 cut(s)	1481
HpyCH4V	TGCA	7 cut(s)	578, 605, 611, 704, 1087, 1217, 1225
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 317, 326, 1516
HpyF3I	CTNAG	7 cut(s)	36, 132, 404, 947, 1166, 1190, 1473
HpySE526I	ACGT	1 cut(s)	1481
Hsp92I	GRCGYC	2 cut(s)	360, 1481
Hsp92II	CATG	5 cut(s)	340, 727, 748, 907, 1217
HspAI	GCGC	1 cut(s)	571
Ksp22I	TGATCA	1 cut(s)	673
KspAI	GTTAAC	1 cut(s)	1449
Kzo9I	GATC	3 cut(s)	561, 673, 1501
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	1 cut(s)	1099
LweI	GCATC	3 cut(s)	614, 1084, 1152
MaeI	CTAG	1 cut(s)	1145
MaeII	ACGT	1 cut(s)	1481
MaeIII	GTNAC	1 cut(s)	812
MalI	GATC	3 cut(s)	563, 675, 1503
MboI	GATC	3 cut(s)	561, 673, 1501
MfeI	CAATTG	1 cut(s)	1533
MflI	RGATCY	1 cut(s)	1501
MhlI	GDGCHC	1 cut(s)	671
MlsI	TGGCCA	2 cut(s)	240, 1457
MluCI	AATT	8 cut(s)	293, 740, 1003, 1011, 1033, 1077, 1279, 1533
MluNI	TGGCCA	2 cut(s)	240, 1457
MlyI	GAGTC	5 cut(s)	362, 514, 935, 1237, 1572
MmeI	TCCRAC	2 cut(s)	170, 217
Mox20I	TGGCCA	2 cut(s)	240, 1457
Mph1103I	ATGCAT	2 cut(s)	607, 1219
MroXI	GAANNNNTTC	2 cut(s)	764, 935
MscI	TGGCCA	2 cut(s)	240, 1457
MslI	CAYNNNNRTG	2 cut(s)	821, 1415
Msp20I	TGGCCA	2 cut(s)	240, 1457
MspCI	CTTAAG	1 cut(s)	1511
MspR9I	CCNGG	3 cut(s)	987, 1233, 1344
MunI	CAATTG	1 cut(s)	1533
Mva1269I	GAATGC	3 cut(s)	683, 706, 1491
MvaI	CCWGG	3 cut(s)	987, 1233, 1344
MvnI	CGCG	1 cut(s)	571
MwoI	GCNNNNNNNGC	4 cut(s)	237, 317, 326, 1516
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	561, 673, 1501
NlaIII	CATG	5 cut(s)	340, 727, 748, 907, 1217
NlaIV	GGNNCC	1 cut(s)	984
NmeAIII	GCCGAG	1 cut(s)	355
NsiI	ATGCAT	2 cut(s)	607, 1219
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PctI	GAATGC	3 cut(s)	683, 706, 1491
PdmI	GAANNNNTTC	2 cut(s)	764, 935
PfeI	GAWTC	5 cut(s)	550, 931, 1133, 1312, 1397
PflMI	CCANNNNNTGG	2 cut(s)	226, 271
PkrI	GCNGC	2 cut(s)	313, 1089
PleI	GAGTC	5 cut(s)	361, 513, 935, 1236, 1571
PpsI	GAGTC	5 cut(s)	361, 513, 935, 1236, 1571
PpuMI	RGGWCCY	2 cut(s)	1121, 1286
PshBI	ATTAAT	1 cut(s)	1593
PsiI	TTATAA	1 cut(s)	587
Psp5II	RGGWCCY	2 cut(s)	1121, 1286
Psp6I	CCWGG	3 cut(s)	985, 1231, 1342
PspGI	CCWGG	3 cut(s)	985, 1231, 1342
PspN4I	GGNNCC	1 cut(s)	984
PspPI	GGNCC	2 cut(s)	1121, 1286
PspPPI	RGGWCCY	2 cut(s)	1121, 1286
PstI	CTGCAG	1 cut(s)	1227
PstNI	CAGNNNCTG	2 cut(s)	1165, 1429
PsuI	RGATCY	1 cut(s)	1501
RsaI	GTAC	4 cut(s)	307, 1020, 1059, 1422
RsaNI	GTAC	4 cut(s)	306, 1019, 1058, 1421
RseI	CAYNNNNRTG	2 cut(s)	821, 1415
SatI	GCNGC	2 cut(s)	312, 1088
Sau3AI	GATC	3 cut(s)	561, 673, 1501
Sau96I	GGNCC	2 cut(s)	1121, 1286
ScaI	AGTACT	1 cut(s)	1059
SchI	GAGTC	5 cut(s)	362, 514, 935, 1237, 1572
ScrFI	CCNGG	3 cut(s)	987, 1233, 1344
SduI	GDGCHC	1 cut(s)	671
SfaNI	GCATC	3 cut(s)	614, 1084, 1152
SfcI	CTRYAG	1 cut(s)	1223
SfiI	GGCCNNNNNGGCC	1 cut(s)	317
SinI	GGWCC	2 cut(s)	1121, 1286
SmiMI	CAYNNNNRTG	2 cut(s)	821, 1415
SmlI	CTYRAG	2 cut(s)	992, 1511
SmoI	CTYRAG	2 cut(s)	992, 1511
Sse9I	AATT	8 cut(s)	293, 740, 1003, 1011, 1033, 1077, 1279, 1533
SsiI	CCGC	2 cut(s)	204, 312
SspMI	CTAG	1 cut(s)	1145
StyD4I	CCNGG	3 cut(s)	985, 1231, 1342
StyI	CCWWGG	2 cut(s)	336, 1458
TaaI	ACNGT	3 cut(s)	382, 872, 1249
TaiI	ACGT	1 cut(s)	1484
TaqI	TCGA	6 cut(s)	348, 363, 564, 780, 939, 1264
TasI	AATT	8 cut(s)	293, 740, 1003, 1011, 1033, 1077, 1279, 1533
TatI	WGTACW	2 cut(s)	1018, 1057
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	5 cut(s)	550, 931, 1133, 1312, 1397
TscAI	CASTG	1 cut(s)	777
TseI	GCWGC	1 cut(s)	1087
TspDTI	ATGAA	7 cut(s)	131, 483, 733, 980, 1283, 1383, 1388
TspGWI	ACGGA	1 cut(s)	1573
TspRI	CASTG	1 cut(s)	777
Van91I	CCANNNNNTGG	2 cut(s)	226, 271
Vha464I	CTTAAG	1 cut(s)	1511
VpaK11BI	GGWCC	2 cut(s)	1121, 1286
VspI	ATTAAT	1 cut(s)	1593
XapI	RAATTY	1 cut(s)	740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1465
XmnI	GAANNNNTTC	2 cut(s)	764, 935
XspI	CTAG	1 cut(s)	1145
ZraI	GACGTC	1 cut(s)	1482
ZrmI	AGTACT	1 cut(s)	1059
Zsp2I	ATGCAT	2 cut(s)	607, 1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.