Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8097930.1

Orthogroup ID

OG0007278

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 506

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8097930.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 505 bp

atggcacttccctccatagcaagaaggctacgaactaaacaccccctctgccaatcactcactctactccaccaccccatctctaactcaccctattcttcactttctctccacccccgtctctctcagccatttcatccaacatctgtcgttccatcccaaacccctcgccatttctctactctccgacccttctccgccgaaatcccccaccacccattgggcttcaatggccagcgtttcaacacagaccactcccacaacttgggtctcacccagtttcttgaattgctcacaagtacggccggtttggcctctgaagccgacgccatggcttttctcgacgagtcgggcgtcgagccgaagcgagatacagtctttcaggcgatttgggagctgaggggagattggaagttggcgtttttgggtttcaaatggggtgagaagtggggctgttgcgatgaagaggcgtgtagtttgatggtttgggttttcgggagtcacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

168

Amino Acids

18.9

Weight (kDa)

6.82

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80880 AT1G80880 AT1G80880
fragaria_vesca	FvH4_6g28510 FvH4_6g28510
malus_domestica	MD17G1224000.v1.1
prunus_persica	Prupe.3G099700_v2.0.a1 Prupe.3G099700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0132781
rosa_laevigata	RLG00000019275 RLG00000019279 RLG00000019280 RLG00000019283
rosa_multiflora	Rmu_co8097930.1_g000001 Rmu_ssc0000074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111670
rosa_rugosa	Rorug02G0307400 Rorug02G0307500 Rorug02G0307600 Rorug02G0307700
rosa_samantha	Rh2AG360100 Rh2BG366000 Rh2CG343400 Rh2DG383000
rosa_wichuraiana	Rw2G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	220, 265
AciI	CCGC	1 cut(s)	198
AcoI	YGGCCR	2 cut(s)	232, 303
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	2 cut(s)	327, 354
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	2 cut(s)	220, 265
AgsI	TTSAA	4 cut(s)	229, 244, 287, 433
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
Alw26I	GTCTC	2 cut(s)	125, 275
AoxI	GGCC	3 cut(s)	232, 303, 312
AsuHPI	GGTGA	4 cut(s)	81, 265, 452, 494
BalI	TGGCCA	1 cut(s)	234
BbvCI	CCTCAGC	1 cut(s)	398
BccI	CCATC	3 cut(s)	86, 163, 475
BceAI	ACGGC	1 cut(s)	318
BcoDI	GTCTC	2 cut(s)	125, 275
BglI	GCCNNNNNGGC	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	271
BmuI	ACTGGG	1 cut(s)	271
Bpu10I	CCTNAGC	1 cut(s)	398
BsaHI	GRCGYC	2 cut(s)	327, 354
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 265
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	136, 155
BseLI	CCNNNNNNNGG	2 cut(s)	220, 265
BseMII	CTCAG	2 cut(s)	140, 389
BseNI	ACTGG	1 cut(s)	277
BseX3I	CGGCCG	1 cut(s)	303
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	234, 305, 314
BsiEI	CGRYCG	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	220, 265
BsmAI	GTCTC	2 cut(s)	125, 275
BsmBI	CGTCTC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	234, 305, 314
Bso31I	GGTCTC	1 cut(s)	275
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	3 cut(s)	234, 305, 314
BspCNI	CTCAG	2 cut(s)	139, 390
BspTNI	GGTCTC	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	330
BssNI	GRCGYC	2 cut(s)	327, 354
BssT1I	CCWWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	2 cut(s)	327, 354
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	126, 398
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	136, 155
BstMAI	GTCTC	2 cut(s)	125, 275
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 311, 320
BstZI	CGGCCG	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	234, 305, 314
BtgI	CCRYGG	1 cut(s)	330
BtgZI	GCGATG	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	136, 155
Cac8I	GCNNGC	1 cut(s)	236
Cfr10I	RCCGGY	1 cut(s)	305
CseI	GACGC	2 cut(s)	335, 343
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	2 cut(s)	126, 398
EaeI	YGGCCR	2 cut(s)	232, 303
EagI	CGGCCG	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
EciI	GGCGGA	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	275
Eco52I	CGGCCG	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	1 cut(s)	334
FaiI	YATR	2 cut(s)	17, 332
FatI	CATG	1 cut(s)	330
FokI	GGATG	2 cut(s)	123, 142
HaeIII	GGCC	3 cut(s)	234, 305, 314
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	2 cut(s)	335, 343
Hin1I	GRCGYC	2 cut(s)	327, 354
Hin1II	CATG	1 cut(s)	334
HinfI	GANTC	2 cut(s)	347, 499
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	4 cut(s)	81, 265, 452, 494
Hpy188I	TCNGA	2 cut(s)	188, 319
Hpy188III	TCNNGA	3 cut(s)	284, 341, 496
Hpy99I	CGWCG	3 cut(s)	329, 347, 359
HpyAV	CCTTC	2 cut(s)	18, 202
HpyCH4III	ACNGT	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 311, 320
HpyF3I	CTNAG	2 cut(s)	126, 398
Hsp92I	GRCGYC	2 cut(s)	327, 354
Hsp92II	CATG	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	4 cut(s)	248, 290, 319, 368
MaeIII	GTNAC	1 cut(s)	500
MboII	GAAGA	2 cut(s)	90, 476
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	1 cut(s)	287
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	2 cut(s)	164, 211
MnlI	CCTC	6 cut(s)	22, 56, 177, 325, 393, 460
Mox20I	TGGCCA	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	234
MspI	CCGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	231, 311, 320
NcoI	CCATGG	1 cut(s)	330
NlaIII	CATG	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PflMI	CCANNNNNTGG	2 cut(s)	220, 265
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SchI	GAGTC	1 cut(s)	356
SetI	ASST	1 cut(s)	399
SfiI	GGCCNNNNNGGCC	1 cut(s)	311
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	342, 357
TasI	AATT	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	2 cut(s)	125, 477
Van91I	CCANNNNNTGG	2 cut(s)	220, 265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.