Prupe.3G099700_v2.0.a1

Pentatricopeptide repeat-containing protein At1g80880

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
7646484 .. 7649751
3268 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G099700.2

Sequence Viewer

Length: 1674 bp
ATGGCACTTCCCTCCATGGCAAGAAGGCTACGAAGCAAACATCCCCAGCTCTTCCTATCACACACGCTGCTCCCGTCCATTTCTAACTCACCGTCTCCTCCTCATTCTTCACACCCTCTCCCCCAGTATCTCTCTCAAACATTTCATCGAACACTTCTCGTTCCCTTTCACACCCCTCGCCATTTCTCTACTCTCCAACCCTTCTCAGCCCAAACTCTCAACGACCCATTGGGCTTCAATGCCCAACGATTCAAGACAAACGACCCGTACAAGTCGGGTCTCACCCAATTTCTCGAATTGCTCAAACATGCCGCCCATTTTGCCTCAGAAGCCGAGGCCATGGCTTTTCTCGACAAGTCGGGCATTGAGGTGAATGGAGATACGGTCCTTTTAGCGATTTGGGAATTGAGGGAAGACTGGAAATTGGCGTTTTTGGCTTTCAAATGGGGTGAAAAATTGGGTTGTTGCGATGAAGAGGCTTGTAGTTTGATGGTATGGGTTTTGGGGAGTCACAGAAAGTTCAGTACTGCTTGGTGTTTGATACGGGACTTGCATCGGGCTCTGATGGATACACGGCGTGCTATGCTTATTATGATTGAGAGATATGCATCTGTAAATGATCCATGTAAGGCCATTAAGACATTCCAGATGATGGACAAGTTCAGGTTGACTCCTGATCGAGAAGCATTCCACACCCTCTTAAATGCTCTCTGTAAATATGGAAACATTGAAGAAGCTGAAGAATTCATGCTTGTTAATAAGAAGCTTTTCCCACTGGAGACTGAGGGCTTTAACATTATTCTCAATGGGTGGTGTAACATATCTGTTGATGTATTTGAAGCCAAGAGAGTTTGGAGAGAAATGTCAAAATGTTGTATTACACCAGATGCAACTTCTTATTCACATTTGATTTCCTGCTTGTCAAAGGTTGGAAAGCTTTTTGACTCCCTTAGGTTCTATGATCAAATGAAGAAAAGGGGCTTTGTTCCTGGCCTCAAAGTTTATAATTCATTGATTTATGTACTAACTTGTGAAAATTGCTTTAACGAAGCTCTCAAAATGCTGGGCAATTTGAAACAAATGGGTTTGCAGCCAGATTCTACTACCTATAACTCAATGATATGTCCTTTATGTGAATCAAAAAAGCTAGAGGAGGCGAGGCAGATGTTGAGCGCTATGATAGAGGATAATATCAGCCCAACCATTGAGACTTACCATGCATTTCTCCAGAGCACAGGTTTAGAGGGAACTCTTGAAATTCTTAATCGAATGAAGAAAGAAAATTTAGGTCCTAATGGCAATACCTTTCTTATGAATCTTGGAAAGTTCTTCAGATTAGAGCAACCTGAGATGGCATTGAAGATTTGGACAGAAATGAAGCACTATGGAGTAGTGCCTGATTCTACACATTACACAGTAATGGTACAGGGCCTGGCAGCTCGTCGTTTGTTAATGAAGGCCAGGGAACTTTTTGCTGAGATGAGGTCAAACGGATTTTTGGGAGATCCAAAGCTTGAAAAGCTTTTGAAGGAACCAGTTGGAGGCAGTAGTGTAAAAGGAAAACAGAGACTGAGACCAGTAAAGCAAGCAACAAGGGTTAATCAAAAGCAAGGCAGGATGAAGAGATGGAAAAGTCCACACCAATCAAGAGAGGAGAAGACATCAATTCAATAG

Protein Analysis

558

Amino Acids

63.87

Weight (kDa)

9.2

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1005
AccB7I CCANNNNNTGG 1 cut(s) 652
AciI CCGC 1 cut(s) 312
AclWI GGATC 2 cut(s) 614, 1499
AcsI RAATTY 3 cut(s) 743, 1257, 1282
AcuI CTGAAG 2 cut(s) 759, 1315
AdeI CACNNNGTG 1 cut(s) 578
AfaI GTAC 4 cut(s) 269, 526, 1023, 1425
AfeI AGCGCT 1 cut(s) 1174
AfiI CCNNNNNNNGG 2 cut(s) 652, 1541
AjnI CCWGG 3 cut(s) 988, 1431, 1460
AluBI AGCT 9 cut(s) 49, 737, 766, 937, 1052, 1147, 1439, 1513, 1522
AluI AGCT 9 cut(s) 49, 737, 766, 937, 1052, 1147, 1439, 1513, 1522
Alw21I GWGCWC 1 cut(s) 1235
Alw26I GTCTC 6 cut(s) 99, 284, 773, 1202, 1561, 1567
AlwI GGATC 2 cut(s) 614, 1499
AlwNI CAGNNNCTG 2 cut(s) 1432, 1570
Aor51HI AGCGCT 1 cut(s) 1174
AoxI GGCC 5 cut(s) 336, 630, 991, 1429, 1458
ApeKI GCWGC 3 cut(s) 67, 1090, 1436
ApoI RAATTY 3 cut(s) 743, 1257, 1282
Asp700I GAANNNNTTC 1 cut(s) 767
AspLEI GCGC 1 cut(s) 1175
AspS9I GGNCC 3 cut(s) 385, 1289, 1429
AsuHPI GGTGA 4 cut(s) 81, 274, 382, 461
AvaII GGWCC 2 cut(s) 385, 1289
AxyI CCTNAGG 1 cut(s) 950
BanII GRGCYC 1 cut(s) 562
BbsI GAAGAC 2 cut(s) 420, 1664
Bbv12I GWGCWC 1 cut(s) 1235
BbvI GCAGC 3 cut(s) 54, 1102, 1448
BccI CCATC 5 cut(s) 484, 559, 646, 1345, 1620
BceAI ACGGC 1 cut(s) 590
BciT130I CCWGG 3 cut(s) 990, 1433, 1462
BciVI GTATCC 1 cut(s) 562
BclI TGATCA 1 cut(s) 961
BcoDI GTCTC 6 cut(s) 99, 284, 773, 1202, 1561, 1567
BfaI CTAG 1 cut(s) 1148
BfoI RGCGCY 1 cut(s) 1176
BfuI GTATCC 1 cut(s) 562
BisI GCNGC 4 cut(s) 68, 312, 1091, 1437
BlsI GCNGC 4 cut(s) 69, 313, 1092, 1438
BmcAI AGTACT 1 cut(s) 526
Bme1390I CCNGG 3 cut(s) 990, 1433, 1462
Bme18I GGWCC 2 cut(s) 385, 1289
BmgT120I GGNCC 3 cut(s) 385, 1289, 1429
BmiI GGNNCC 1 cut(s) 1533
BmrFI CCNGG 3 cut(s) 990, 1433, 1462
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 3 cut(s) 562, 617, 877
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 2 cut(s) 420, 1664
BpmI CTGGAG 2 cut(s) 797, 1211
BsaBI GATNNNNATC 1 cut(s) 607
BsaI GGTCTC 2 cut(s) 284, 1567
BsaJI CCNNGG 4 cut(s) 15, 333, 339, 1461
BsaXI ACNNNNNCTCC 4 cut(s) 102, 132, 369, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 652, 1541
Bse1I ACTGG 5 cut(s) 124, 422, 780, 1535, 1577
Bse21I CCTNAGG 1 cut(s) 950
Bse8I GATNNNNATC 1 cut(s) 607
BseBI CCWGG 3 cut(s) 990, 1433, 1462
BseDI CCNNGG 4 cut(s) 15, 333, 339, 1461
BseGI GGATG 2 cut(s) 40, 1623
BseJI GATNNNNATC 1 cut(s) 607
BseLI CCNNNNNNNGG 2 cut(s) 652, 1541
BseMII CTCAG 6 cut(s) 219, 339, 774, 1338, 1467, 1562
BseNI ACTGG 5 cut(s) 124, 422, 780, 1535, 1577
BseRI GAGGAG 4 cut(s) 87, 90, 1166, 1667
BseXI GCAGC 3 cut(s) 54, 1102, 1448
BseYI CCCAGC 2 cut(s) 45, 1063
BshFI GGCC 5 cut(s) 338, 632, 993, 1431, 1460
BsiHKAI GWGCWC 1 cut(s) 1235
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 2 cut(s) 652, 1541
BsmAI GTCTC 6 cut(s) 99, 284, 773, 1202, 1561, 1567
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 560
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 5 cut(s) 338, 632, 993, 1431, 1460
Bso31I GGTCTC 2 cut(s) 284, 1567
Bsp1286I GDGCHC 2 cut(s) 562, 1235
Bsp143I GATC 4 cut(s) 619, 676, 961, 1504
Bsp19I CCATGG 2 cut(s) 15, 339
BspACI CCGC 1 cut(s) 312
BspANI GGCC 5 cut(s) 338, 632, 993, 1431, 1460
BspCNI CTCAG 6 cut(s) 218, 338, 775, 1339, 1468, 1563
BspLI GGNNCC 1 cut(s) 1533
BspPI GGATC 2 cut(s) 614, 1499
BspQI GCTCTTC 1 cut(s) 56
BspTNI GGTCTC 2 cut(s) 284, 1567
BsrI ACTGG 5 cut(s) 124, 422, 780, 1535, 1577
BssECI CCNNGG 4 cut(s) 15, 333, 339, 1461
BssMI GATC 4 cut(s) 619, 676, 961, 1504
BssT1I CCWWGG 2 cut(s) 15, 339
Bst2UI CCWGG 3 cut(s) 990, 1433, 1462
Bst4CI ACNGT 3 cut(s) 93, 385, 1417
Bst6I CTCTTC 3 cut(s) 56, 468, 1616
BstC8I GCNNGC 2 cut(s) 579, 1587
BstDEI CTNAG 7 cut(s) 205, 325, 783, 950, 1347, 1476, 1571
BstDSI CCRYGG 2 cut(s) 15, 339
BstF5I GGATG 2 cut(s) 40, 1623
BstH2I RGCGCY 1 cut(s) 1176
BstHHI GCGC 1 cut(s) 1175
BstKTI GATC 4 cut(s) 622, 679, 964, 1507
BstMAI GTCTC 6 cut(s) 99, 284, 773, 1202, 1561, 1567
BstMBI GATC 4 cut(s) 619, 676, 961, 1504
BstMWI GCNNNNNNNGC 5 cut(s) 320, 329, 434, 583, 1519
BstNI CCWGG 3 cut(s) 990, 1433, 1462
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 3 cut(s) 988, 1431, 1460
BstV1I GCAGC 3 cut(s) 54, 1102, 1448
BstV2I GAAGAC 2 cut(s) 420, 1664
BstX2I RGATCY 1 cut(s) 1504
BstYI RGATCY 1 cut(s) 1504
Bsu36I CCTNAGG 1 cut(s) 950
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 5 cut(s) 338, 632, 993, 1431, 1460
BtgI CCRYGG 2 cut(s) 15, 339
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 2 cut(s) 40, 1623
BtsIMutI CAGTG 1 cut(s) 773
Cac8I GCNNGC 2 cut(s) 579, 1587
CaiI CAGNNNCTG 2 cut(s) 1432, 1570
CfoI GCGC 1 cut(s) 1175
Cfr13I GGNCC 3 cut(s) 385, 1289, 1429
Csp6I GTAC 4 cut(s) 268, 525, 1022, 1424
CviAII CATG 6 cut(s) 16, 308, 340, 624, 748, 1217
CviQI GTAC 4 cut(s) 268, 525, 1022, 1424
DdeI CTNAG 7 cut(s) 205, 325, 783, 950, 1347, 1476, 1571
DpnI GATC 4 cut(s) 621, 678, 963, 1506
DpnII GATC 4 cut(s) 619, 676, 961, 1504
DraIII CACNNNGTG 1 cut(s) 578
Eam1104I CTCTTC 3 cut(s) 56, 468, 1616
EarI CTCTTC 3 cut(s) 56, 468, 1616
Eco130I CCWWGG 2 cut(s) 15, 339
Eco24I GRGCYC 1 cut(s) 562
Eco31I GGTCTC 2 cut(s) 284, 1567
Eco47I GGWCC 2 cut(s) 385, 1289
Eco47III AGCGCT 1 cut(s) 1174
Eco57I CTGAAG 2 cut(s) 759, 1315
Eco81I CCTNAGG 1 cut(s) 950
EcoO109I RGGNCCY 2 cut(s) 1289, 1429
EcoRI GAATTC 1 cut(s) 743
EcoRII CCWGG 3 cut(s) 988, 1431, 1460
EcoT14I CCWWGG 2 cut(s) 15, 339
EcoT22I ATGCAT 2 cut(s) 610, 1222
EcoT38I GRGCYC 1 cut(s) 562
ErhI CCWWGG 2 cut(s) 15, 339
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 6 cut(s) 19, 311, 343, 627, 751, 1220
FaqI GGGAC 1 cut(s) 560
FatI CATG 6 cut(s) 15, 307, 339, 623, 747, 1216
FbaI TGATCA 1 cut(s) 961
Fnu4HI GCNGC 4 cut(s) 68, 312, 1091, 1437
FokI GGATG 2 cut(s) 27, 1630
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 4 cut(s) 68, 312, 1091, 1437
FspBI CTAG 1 cut(s) 1148
GlaI GCGC 1 cut(s) 1174
GluI GCNGC 4 cut(s) 68, 312, 1091, 1437
GsaI CCCAGC 2 cut(s) 49, 1067
GsuI CTGGAG 2 cut(s) 797, 1211
HaeII RGCGCY 1 cut(s) 1176
HaeIII GGCC 5 cut(s) 338, 632, 993, 1431, 1460
HhaI GCGC 1 cut(s) 1175
Hin1II CATG 6 cut(s) 19, 311, 343, 627, 751, 1220
Hin6I GCGC 1 cut(s) 1173
HinP1I GCGC 1 cut(s) 1173
HincII GTYRAC 1 cut(s) 669
HindII GTYRAC 1 cut(s) 669
HindIII AAGCTT 4 cut(s) 764, 935, 1511, 1520
HinfI GANTC 8 cut(s) 249, 508, 670, 944, 1097, 1136, 1315, 1400
HphI GGTGA 4 cut(s) 81, 274, 382, 461
Hpy166II GTNNAC 2 cut(s) 669, 1637
Hpy188I TCNGA 3 cut(s) 328, 564, 1334
Hpy188III TCNNGA 9 cut(s) 253, 293, 350, 646, 674, 680, 1228, 1253, 1647
Hpy8I GTNNAC 2 cut(s) 669, 1637
Hpy99I CGWCG 1 cut(s) 1446
HpyAV CCTTC 4 cut(s) 18, 211, 1450, 1522
HpyCH4III ACNGT 3 cut(s) 93, 385, 1417
HpyCH4V TGCA 5 cut(s) 553, 608, 890, 1090, 1220
HpyF10VI GCNNNNNNNGC 5 cut(s) 320, 329, 434, 583, 1519
HpyF3I CTNAG 7 cut(s) 205, 325, 783, 950, 1347, 1476, 1571
Hsp92II CATG 6 cut(s) 19, 311, 343, 627, 751, 1220
HspAI GCGC 1 cut(s) 1173
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 4 cut(s) 619, 676, 961, 1504
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 75
Lsp1109I GCAGC 3 cut(s) 54, 1102, 1448
LweI GCATC 3 cut(s) 562, 617, 877
MaeI CTAG 1 cut(s) 1148
MaeIII GTNAC 2 cut(s) 509, 815
MalI GATC 4 cut(s) 621, 678, 963, 1506
MboI GATC 4 cut(s) 619, 676, 961, 1504
MflI RGATCY 1 cut(s) 1504
MhlI GDGCHC 2 cut(s) 562, 1235
MlyI GAGTC 3 cut(s) 517, 664, 938
MmeI TCCRAC 3 cut(s) 220, 910, 1519
Mph1103I ATGCAT 2 cut(s) 610, 1222
MroXI GAANNNNTTC 1 cut(s) 767
MseI TTAA 8 cut(s) 636, 701, 756, 792, 1044, 1263, 1451, 1599
MslI CAYNNNNRTG 2 cut(s) 368, 1418
MspR9I CCNGG 3 cut(s) 990, 1433, 1462
Mva1269I GAATGC 1 cut(s) 686
MvaI CCWGG 3 cut(s) 990, 1433, 1462
MwoI GCNNNNNNNGC 5 cut(s) 320, 329, 434, 583, 1519
NcoI CCATGG 2 cut(s) 15, 339
NdeII GATC 4 cut(s) 619, 676, 961, 1504
NlaIII CATG 6 cut(s) 19, 311, 343, 627, 751, 1220
NlaIV GGNNCC 1 cut(s) 1533
NmeAIII GCCGAG 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 509
NsiI ATGCAT 2 cut(s) 610, 1222
NspI RCATGY 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PctI GAATGC 1 cut(s) 686
PdmI GAANNNNTTC 1 cut(s) 767
PfeI GAWTC 5 cut(s) 249, 1097, 1136, 1315, 1400
PflMI CCANNNNNTGG 1 cut(s) 652
PkrI GCNGC 4 cut(s) 69, 313, 1092, 1438
PleI GAGTC 3 cut(s) 516, 664, 938
PpsI GAGTC 3 cut(s) 516, 664, 938
PpuMI RGGWCCY 1 cut(s) 1289
PsiI TTATAA 1 cut(s) 1005
Psp5II RGGWCCY 1 cut(s) 1289
Psp6I CCWGG 3 cut(s) 988, 1431, 1460
PspFI CCCAGC 2 cut(s) 45, 1063
PspGI CCWGG 3 cut(s) 988, 1431, 1460
PspN4I GGNNCC 1 cut(s) 1533
PspPI GGNCC 3 cut(s) 385, 1289, 1429
PspPPI RGGWCCY 1 cut(s) 1289
PstNI CAGNNNCTG 2 cut(s) 1432, 1570
PsuI RGATCY 1 cut(s) 1504
RsaI GTAC 4 cut(s) 269, 526, 1023, 1425
RsaNI GTAC 4 cut(s) 268, 525, 1022, 1424
RseI CAYNNNNRTG 2 cut(s) 368, 1418
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 8 cut(s) 636, 701, 756, 792, 1044, 1263, 1451, 1599
SatI GCNGC 4 cut(s) 68, 312, 1091, 1437
Sau3AI GATC 4 cut(s) 619, 676, 961, 1504
Sau96I GGNCC 3 cut(s) 385, 1289, 1429
ScaI AGTACT 1 cut(s) 526
SchI GAGTC 3 cut(s) 517, 664, 938
ScrFI CCNGG 3 cut(s) 990, 1433, 1462
SduI GDGCHC 2 cut(s) 562, 1235
SfaNI GCATC 3 cut(s) 562, 617, 877
SinI GGWCC 2 cut(s) 385, 1289
SmiMI CAYNNNNRTG 2 cut(s) 368, 1418
SsiI CCGC 1 cut(s) 312
SspMI CTAG 1 cut(s) 1148
StyD4I CCNGG 3 cut(s) 988, 1431, 1460
StyI CCWWGG 2 cut(s) 15, 339
TaaI ACNGT 3 cut(s) 93, 385, 1417
TaqI TCGA 5 cut(s) 148, 294, 351, 679, 1267
TatI WGTACW 2 cut(s) 524, 1021
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 5 cut(s) 249, 1097, 1136, 1315, 1400
Tru1I TTAA 8 cut(s) 636, 701, 756, 792, 1044, 1263, 1451, 1599
Tru9I TTAA 8 cut(s) 636, 701, 756, 792, 1044, 1263, 1451, 1599
TscAI CASTG 1 cut(s) 780
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 3 cut(s) 67, 1090, 1436
Tsp45I GTSAC 1 cut(s) 509
TspGWI ACGGA 1 cut(s) 1506
TspRI CASTG 1 cut(s) 780
Van91I CCANNNNNTGG 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 385, 1289
XapI RAATTY 3 cut(s) 743, 1257, 1282
XceI RCATGY 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 1 cut(s) 1148
ZrmI AGTACT 1 cut(s) 526
Zsp2I ATGCAT 2 cut(s) 610, 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.