Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007278

Physical Location & Seq

Genomic Coordinates Forward (+)

49578723 .. 49579325

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019279

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCACTTCCCTCCATAGCAAGAAGGCTACGAACTAAACACCCCCTCTGCCTATCACTCACTCTACTCCACCACCACCACCCCATCTCTAACTCATCATATTCTTCACTTTCTCTCCACCACCATCTCTCTCAGCCATTTCATCCAACACCCGTCGTCCCATCCCAAACCCCTCGCCATTTCTCTACTCTCCAATTCTTCTCCGCCGAAATCCCCCACCAACCATTGGGCTTCAATGGCCAGCGTTTCAACACAGACCACTCCCACAACTTGGGTCTCACCCAATTTCTTGAATTGCTCACAAGTACCTCCTGTTTGGCCTCTGAAGCCGACGCCGTGGCTTTTCTCGACGAGTCGGGCGTCGAGGCGAAGCGAGATATGGTCTTTCAGGCGATTTGGGAGCTGAGGGGAGATTGGAAGTTGGCGTTTTTGGGTTTCAAATGGGGTGAGAAATGGGGCTGTTGCGATGAAGAGGCGTGTAGTTTGATGGTTTGGGTTTTGGGGAGTCATGGAAAGTTTAGTACTGCTTGGTGTTTGATACGGGACTTGAATCAGGCTTTGATTGATACGCGCCGTGCAATGCTTATAATGATTGATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

201

Amino Acids

22.7

Weight (kDa)

6.91

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80880 AT1G80880 AT1G80880
fragaria_vesca	FvH4_6g28510 FvH4_6g28510
malus_domestica	MD17G1224000.v1.1
prunus_persica	Prupe.3G099700_v2.0.a1 Prupe.3G099700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0132781
rosa_laevigata	RLG00000019275 RLG00000019279 RLG00000019280 RLG00000019283
rosa_multiflora	Rmu_co8097930.1_g000001 Rmu_ssc0000074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111670
rosa_rugosa	Rorug02G0307400 Rorug02G0307500 Rorug02G0307600 Rorug02G0307700
rosa_samantha	Rh2AG360100 Rh2BG366000 Rh2CG343400 Rh2DG383000
rosa_wichuraiana	Rw2G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AccB7I	CCANNNNNTGG	2 cut(s)	226, 271
AccII	CGCG	1 cut(s)	571
AciI	CCGC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	2 cut(s)	333, 360
AfaI	GTAC	2 cut(s)	307, 523
AfiI	CCNNNNNNNGG	2 cut(s)	226, 271
AgsI	TTSAA	5 cut(s)	235, 250, 293, 439, 550
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Alw26I	GTCTC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	238, 318
AspLEI	GCGC	1 cut(s)	573
AsuHPI	GGTGA	2 cut(s)	271, 458
BalI	TGGCCA	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	404
BccI	CCATC	4 cut(s)	92, 132, 169, 481
BceAI	ACGGC	2 cut(s)	320, 558
BcoDI	GTCTC	1 cut(s)	281
BmcAI	AGTACT	1 cut(s)	523
Bpu10I	CCTNAGC	1 cut(s)	404
BsaHI	GRCGYC	2 cut(s)	333, 360
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 271
Bse3DI	GCAATG	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	2 cut(s)	142, 161
BseLI	CCNNNNNNNGG	2 cut(s)	226, 271
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	2 cut(s)	146, 395
Bsh1236I	CGCG	1 cut(s)	571
BshFI	GGCC	2 cut(s)	240, 320
BslFI	GGGAC	2 cut(s)	143, 557
BslI	CCNNNNNNNGG	2 cut(s)	226, 271
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	143, 557
BsnI	GGCC	2 cut(s)	240, 320
Bso31I	GGTCTC	1 cut(s)	281
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	240, 320
BspCNI	CTCAG	2 cut(s)	145, 396
BspFNI	CGCG	1 cut(s)	571
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	585
BssECI	CCNNGG	1 cut(s)	336
BssNI	GRCGYC	2 cut(s)	333, 360
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	2 cut(s)	333, 360
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	2 cut(s)	132, 404
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	142, 161
BstFNI	CGCG	1 cut(s)	571
BstHHI	GCGC	1 cut(s)	573
BstMAI	GTCTC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 326
BstUI	CGCG	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	240, 320
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	2 cut(s)	142, 161
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	1 cut(s)	573
CseI	GACGC	2 cut(s)	341, 349
Csp6I	GTAC	2 cut(s)	306, 522
CviAII	CATG	1 cut(s)	509
CviQI	GTAC	2 cut(s)	306, 522
DdeI	CTNAG	2 cut(s)	132, 404
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
EciI	GGCGGA	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	345
FaeI	CATG	1 cut(s)	512
FaiI	YATR	5 cut(s)	17, 100, 380, 510, 587
FaqI	GGGAC	2 cut(s)	143, 557
FatI	CATG	1 cut(s)	508
FokI	GGATG	2 cut(s)	129, 148
GlaI	GCGC	1 cut(s)	572
HaeIII	GGCC	2 cut(s)	240, 320
HgaI	GACGC	2 cut(s)	341, 349
HhaI	GCGC	1 cut(s)	573
Hin1I	GRCGYC	2 cut(s)	333, 360
Hin1II	CATG	1 cut(s)	512
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HinfI	GANTC	3 cut(s)	353, 505, 550
HphI	GGTGA	2 cut(s)	271, 458
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	2 cut(s)	290, 347
Hpy99I	CGWCG	4 cut(s)	158, 335, 353, 365
HpyAV	CCTTC	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 326
HpyF3I	CTNAG	2 cut(s)	132, 404
Hsp92I	GRCGYC	2 cut(s)	333, 360
Hsp92II	CATG	1 cut(s)	512
HspAI	GCGC	1 cut(s)	571
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	4 cut(s)	254, 325, 374, 539
MboII	GAAGA	3 cut(s)	96, 190, 482
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	3 cut(s)	194, 284, 293
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	362, 514
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	8 cut(s)	22, 56, 183, 319, 331, 358, 399, 466
Mox20I	TGGCCA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	240
MvnI	CGCG	1 cut(s)	571
MwoI	GCNNNNNNNGC	2 cut(s)	237, 326
NlaIII	CATG	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	550
PflMI	CCANNNNNTGG	2 cut(s)	226, 271
PleI	GAGTC	2 cut(s)	361, 513
PpsI	GAGTC	2 cut(s)	361, 513
PsiI	TTATAA	1 cut(s)	587
RsaI	GTAC	2 cut(s)	307, 523
RsaNI	GTAC	2 cut(s)	306, 522
ScaI	AGTACT	1 cut(s)	523
SchI	GAGTC	2 cut(s)	362, 514
SetI	ASST	3 cut(s)	311, 405, 602
Sse9I	AATT	3 cut(s)	194, 284, 293
SsiI	CCGC	1 cut(s)	204
TaqI	TCGA	2 cut(s)	348, 363
TasI	AATT	3 cut(s)	194, 284, 293
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	1 cut(s)	550
TspDTI	ATGAA	2 cut(s)	131, 483
Van91I	CCANNNNNTGG	2 cut(s)	226, 271
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.