Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007278

Physical Location & Seq

Genomic Coordinates Forward (+)

34849909 .. 34853647

Gene Structure 3739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0307500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAATGTTCTTTCCTATTTCTGGCTTAATGAGGGATTTCATTATTCACAGAAGTTTTTATCATGGGGATTGGTTGATGCTATGCACAATGCAATATCTAAAAATTGCGAGGCTCAATGCAGACCTGAGGGAATTGAGGCATTACCTAAAGGAATTGTTTCCAAGACCTCTGACTTTGTAATGCAACCATTATGGGGACCCCGAACTCAAAAGAAACCAAAGTCATCAACAAACTTATTGGCCATTGCAGTTGGAATCAAGCAAAAAGAAAGTGTAAACAAAATTGTAAAGAAGTTTCTATCAAGCGATTTCGTCGTGATGCTATTTCATTATGATGGTAATGTAAATGACTGGAGGGATTTGGAATGGAGTGGTCGGGCCATACATGTATCTGCCATGAATCAAACCAAGTGGTGGTATGCAAAGCGATTCTTACACCCAGATATTGTTTCTGAGTATGCATTCATCTTCCTTTGGGATGAAGACCTTGGAATCGAAAACTTTAATGTTGGAAGATATCTATCAATTATTAGAAAAGAGGGGCTTGAAATTTCACAGCCAGGACTTGATCCTGACAACTCGGAGGTGCATCATAATTTTACAGCAAGAGACAAGAGATCAGAAGTACATAGGAAGATAAACAAGACAATTGGTGGTGGAAGGCGTTGCAATGAAAATAGCACAGATCCTCCATGCACAGGGTTTGTTGAAATGATGGCTCCTGTTTTTTCAAGAGCATCCTGGCACTGCGTGTGGCATATGATTCAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

257

Amino Acids

29.72

Weight (kDa)

8.53

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF707	PF05212	39 - 256	2.6e-110	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80880 AT1G80880 AT1G80880
fragaria_vesca	FvH4_6g28510 FvH4_6g28510
malus_domestica	MD17G1224000.v1.1
prunus_persica	Prupe.3G099700_v2.0.a1 Prupe.3G099700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0132781
rosa_laevigata	RLG00000019275 RLG00000019279 RLG00000019280 RLG00000019283
rosa_multiflora	Rmu_co8097930.1_g000001 Rmu_ssc0000074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111670
rosa_rugosa	Rorug02G0307400 Rorug02G0307500 Rorug02G0307600 Rorug02G0307700
rosa_samantha	Rh2AG360100 Rh2BG366000 Rh2CG343400 Rh2DG383000
rosa_wichuraiana	Rw2G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	414
AclWI	GGATC	2 cut(s)	563, 680
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	549
AdeI	CACNNNGTG	1 cut(s)	751
AfaI	GTAC	1 cut(s)	627
AfiI	CCNNNNNNNGG	4 cut(s)	21, 194, 414, 698
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	548, 710, 732
AjnI	CCWGG	2 cut(s)	559, 740
Alw26I	GTCTC	1 cut(s)	603
AlwI	GGATC	2 cut(s)	563, 680
AoxI	GGCC	2 cut(s)	240, 378
ApoI	RAATTY	1 cut(s)	549
Asp700I	GAANNNNTTC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	197, 378
AvaII	GGWCC	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	489
BccI	CCATC	2 cut(s)	329, 709
BciT130I	CCWGG	2 cut(s)	561, 742
BcoDI	GTCTC	1 cut(s)	603
Bme1390I	CCNGG	2 cut(s)	561, 742
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	197, 378
BmiI	GGNNCC	3 cut(s)	198, 199, 720
BmrFI	CCNGG	2 cut(s)	561, 742
BmsI	GCATC	4 cut(s)	67, 309, 598, 746
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	673, 703
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 194, 414, 698
Bse1I	ACTGG	1 cut(s)	356
Bse21I	CCTNAGG	1 cut(s)	126
Bse3DI	GCAATG	2 cut(s)	243, 676
Bse8I	GATNNNNATC	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	561, 742
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	2 cut(s)	484, 737
BseJI	GATNNNNATC	1 cut(s)	520
BseLI	CCNNNNNNNGG	4 cut(s)	21, 194, 414, 698
BseMI	GCAATG	2 cut(s)	243, 676
BseMII	CTCAG	2 cut(s)	117, 444
BseNI	ACTGG	1 cut(s)	356
BshFI	GGCC	2 cut(s)	242, 380
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	4 cut(s)	21, 194, 414, 698
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	242, 380
Bsp143I	GATC	3 cut(s)	568, 617, 685
BspANI	GGCC	2 cut(s)	242, 380
BspCNI	CTCAG	2 cut(s)	118, 445
BspLI	GGNNCC	3 cut(s)	198, 199, 720
BspPI	GGATC	2 cut(s)	563, 680
BsrDI	GCAATG	2 cut(s)	243, 676
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	3 cut(s)	568, 617, 685
BssT1I	CCWWGG	1 cut(s)	487
Bst2UI	CCWGG	2 cut(s)	561, 742
BstDEI	CTNAG	2 cut(s)	126, 453
BstF5I	GGATG	2 cut(s)	484, 737
BstKTI	GATC	3 cut(s)	571, 620, 688
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	3 cut(s)	568, 617, 685
BstNI	CCWGG	2 cut(s)	561, 742
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	559, 740
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	242, 380
BtsCI	GGATG	2 cut(s)	484, 737
BtsI	GCAGTG	1 cut(s)	745
BtsIMutI	CAGTG	2 cut(s)	745, 773
Cfr13I	GGNCC	2 cut(s)	197, 378
Csp6I	GTAC	1 cut(s)	626
CspCI	CAANNNNNGTGG	2 cut(s)	392, 427
CviAII	CATG	4 cut(s)	63, 386, 397, 693
CviJI	RGCY	7 cut(s)	25, 113, 242, 380, 544, 559, 719
CviKI_1	RGCY	7 cut(s)	25, 113, 242, 380, 544, 559, 719
CviQI	GTAC	1 cut(s)	626
DdeI	CTNAG	2 cut(s)	126, 453
DpnI	GATC	3 cut(s)	570, 619, 687
DpnII	GATC	3 cut(s)	568, 617, 685
DraIII	CACNNNGTG	1 cut(s)	751
EaeI	YGGCCR	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	487
Eco32I	GATATC	1 cut(s)	518
Eco47I	GGWCC	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	559, 740
EcoRV	GATATC	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	487
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	4 cut(s)	66, 389, 400, 696
FalI	AAGNNNNNCTT	4 cut(s)	416, 448, 528, 560
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	4 cut(s)	62, 385, 396, 692
FauNDI	CATATG	1 cut(s)	759
FokI	GGATG	2 cut(s)	491, 724
GsuI	CTGGAG	1 cut(s)	373
HaeIII	GGCC	2 cut(s)	242, 380
Hin1II	CATG	4 cut(s)	66, 389, 400, 696
HinfI	GANTC	5 cut(s)	255, 400, 429, 492, 763
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	4 cut(s)	172, 454, 583, 622
Hpy188III	TCNNGA	3 cut(s)	316, 572, 732
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	654
HpyF3I	CTNAG	2 cut(s)	126, 453
Hsp92II	CATG	4 cut(s)	66, 389, 400, 696
KflI	GGGWCCC	1 cut(s)	197
Kzo9I	GATC	3 cut(s)	568, 617, 685
LmnI	GCTCC	1 cut(s)	724
LweI	GCATC	4 cut(s)	67, 309, 598, 746
MalI	GATC	3 cut(s)	570, 619, 687
MboI	GATC	3 cut(s)	568, 617, 685
MboII	GAAGA	4 cut(s)	460, 494, 525, 646
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	685
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	8 cut(s)	103, 132, 153, 282, 525, 549, 595, 648
MluNI	TGGCCA	1 cut(s)	242
MmeI	TCCRAC	2 cut(s)	232, 490
MnlI	CCTC	9 cut(s)	25, 103, 121, 130, 178, 348, 532, 577, 699
Mox20I	TGGCCA	1 cut(s)	242
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	2 cut(s)	27, 504
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	561, 742
MunI	CAATTG	1 cut(s)	648
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	2 cut(s)	561, 742
NdeI	CATATG	1 cut(s)	759
NdeII	GATC	3 cut(s)	568, 617, 685
NlaIII	CATG	4 cut(s)	66, 389, 400, 696
NlaIV	GGNNCC	3 cut(s)	198, 199, 720
NsiI	ATGCAT	1 cut(s)	463
NspI	RCATGY	1 cut(s)	389
PciI	ACATGT	1 cut(s)	385
PctI	GAATGC	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	157
PfeI	GAWTC	5 cut(s)	255, 400, 429, 492, 763
PflMI	CCANNNNNTGG	1 cut(s)	414
PpuMI	RGGWCCY	1 cut(s)	197
PscI	ACATGT	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	559, 740
PspGI	CCWGG	2 cut(s)	559, 740
PspN4I	GGNNCC	3 cut(s)	198, 199, 720
PspPI	GGNCC	2 cut(s)	197, 378
PspPPI	RGGWCCY	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	685
RsaI	GTAC	1 cut(s)	627
RsaNI	GTAC	1 cut(s)	626
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	27, 504
Sau3AI	GATC	3 cut(s)	568, 617, 685
Sau96I	GGNCC	2 cut(s)	197, 378
ScrFI	CCNGG	2 cut(s)	561, 742
SetI	ASST	5 cut(s)	127, 148, 170, 489, 588
SfaNI	GCATC	4 cut(s)	67, 309, 598, 746
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	8 cut(s)	103, 132, 153, 282, 525, 549, 595, 648
StyD4I	CCNGG	2 cut(s)	559, 740
StyI	CCWWGG	1 cut(s)	487
TaqI	TCGA	1 cut(s)	495
TasI	AATT	8 cut(s)	103, 132, 153, 282, 525, 549, 595, 648
TatI	WGTACW	1 cut(s)	625
TfiI	GAWTC	5 cut(s)	255, 400, 429, 492, 763
Tru1I	TTAA	2 cut(s)	27, 504
Tru9I	TTAA	2 cut(s)	27, 504
TscAI	CASTG	2 cut(s)	752, 773
TspDTI	ATGAA	7 cut(s)	17, 29, 317, 413, 454, 495, 687
TspRI	CASTG	2 cut(s)	752, 773
Van91I	CCANNNNNTGG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	1 cut(s)	549
XceI	RCATGY	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	157
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.