Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007278

Physical Location & Seq

Genomic Coordinates Reverse (-)

34845174 .. 34845932

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0307400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGATCCTAAGGATATCAATCGTGCTACATTGTGGAAGAAAGCGTGTGAGGATAAATCTAGAAATATCCCAAATGAAAAGGCCAAACAATTGGGAGATAGAATTGTAGACGATAGTAATGATGTGTTGACCATGGCATTGGAAACATCCGAGCATGGTGGAAGAGTTAGAGGAGTGGGAGGTTATGTGACTCCAATTGTTTATTTTAACCAACCTAGACGCCGAAGAGGGAATGTTGAAGAGGCTGTTAGAGAGAGTGTTAAAAAGATACTTGACGAGGAGAGAGGGGAAAGAGAGAAAGTTGTGACAGATCTAAACAAGTTTTGGGCGGAAAGGTTTGCAGCATTAGAGGCAACCCTGAAGTCAAACTCTCAGCCAAATGGCCCCATCCTTCCCCAAGTTCAGTGTACTCCTCAGATTGCTGGGAATGCATCTAAGAGGGCCAGTTGTTCATCTGCCAAGGGGAACATCATGGAAGATCATGAGAAGCAGTTTGTCCATATTCATGAGAAAGACAATTGTAAGACCTCGGAAATTTGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

181

Amino Acids

20.42

Weight (kDa)

8.25

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80880 AT1G80880 AT1G80880
fragaria_vesca	FvH4_6g28510 FvH4_6g28510
malus_domestica	MD17G1224000.v1.1
prunus_persica	Prupe.3G099700_v2.0.a1 Prupe.3G099700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0132781
rosa_laevigata	RLG00000019275 RLG00000019279 RLG00000019280 RLG00000019283
rosa_multiflora	Rmu_co8097930.1_g000001 Rmu_ssc0000074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111670
rosa_rugosa	Rorug02G0307400 Rorug02G0307500 Rorug02G0307600 Rorug02G0307700
rosa_samantha	Rh2AG360100 Rh2BG366000 Rh2CG343400 Rh2DG383000
rosa_wichuraiana	Rw2G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	239
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	3 cut(s)	81, 382, 441
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	534
AspS9I	GGNCC	2 cut(s)	383, 441
AxyI	CCTNAGG	1 cut(s)	9
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	60, 216
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	383, 441
BmiI	GGNNCC	2 cut(s)	6, 385
BmsI	GCATC	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	3 cut(s)	132, 459, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bse1I	ACTGG	1 cut(s)	444
Bse21I	CCTNAGG	1 cut(s)	9
Bse8I	GATNNNNATC	1 cut(s)	18
BseDI	CCNNGG	3 cut(s)	132, 459, 528
BseGI	GGATG	2 cut(s)	146, 387
BseJI	GATNNNNATC	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	386, 428
BseNI	ACTGG	1 cut(s)	444
BseRI	GAGGAG	3 cut(s)	186, 293, 402
BseXI	GCAGC	1 cut(s)	353
BseYI	CCCAGC	1 cut(s)	422
BshFI	GGCC	3 cut(s)	83, 384, 443
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	3 cut(s)	83, 384, 443
Bsp143I	GATC	3 cut(s)	4, 310, 478
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	3 cut(s)	83, 384, 443
BspCNI	CTCAG	2 cut(s)	385, 427
BspHI	TCATGA	2 cut(s)	481, 505
BspLI	GGNNCC	2 cut(s)	6, 385
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	3 cut(s)	132, 459, 528
BssMI	GATC	3 cut(s)	4, 310, 478
BssNI	GRCGYC	1 cut(s)	220
BssT1I	CCWWGG	2 cut(s)	132, 459
Bst6I	CTCTTC	3 cut(s)	157, 220, 234
BstACI	GRCGYC	1 cut(s)	220
BstDEI	CTNAG	4 cut(s)	9, 372, 414, 435
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	146, 387
BstKTI	GATC	3 cut(s)	7, 313, 481
BstMBI	GATC	3 cut(s)	4, 310, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 428
BstV1I	GCAGC	1 cut(s)	353
BstX2I	RGATCY	2 cut(s)	4, 310
BstXI	CCANNNNNNTGG	2 cut(s)	91, 139
BstYI	RGATCY	2 cut(s)	4, 310
Bsu36I	CCTNAGG	1 cut(s)	9
BsuRI	GGCC	3 cut(s)	83, 384, 443
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	146, 387
BtsIMutI	CAGTG	1 cut(s)	410
CciI	TCATGA	2 cut(s)	481, 505
Cfr13I	GGNCC	2 cut(s)	383, 441
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	5 cut(s)	133, 155, 472, 482, 506
CviJI	RGCY	5 cut(s)	83, 245, 376, 384, 443
CviKI_1	RGCY	5 cut(s)	83, 245, 376, 384, 443
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	4 cut(s)	9, 372, 414, 435
DpnI	GATC	3 cut(s)	6, 312, 480
DpnII	GATC	3 cut(s)	4, 310, 478
Eam1104I	CTCTTC	3 cut(s)	157, 220, 234
EarI	CTCTTC	3 cut(s)	157, 220, 234
EciI	GGCGGA	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	132, 459
Eco32I	GATATC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	380
Eco81I	CCTNAGG	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	132, 459
EcoT22I	ATGCAT	1 cut(s)	433
ErhI	CCWWGG	2 cut(s)	132, 459
FaeI	CATG	5 cut(s)	136, 158, 475, 485, 509
FaiI	YATR	7 cut(s)	134, 156, 186, 473, 483, 501, 507
FatI	CATG	5 cut(s)	132, 154, 471, 481, 505
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	2 cut(s)	133, 374
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	2 cut(s)	60, 216
GluI	GCNGC	1 cut(s)	342
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	83, 384, 443
HgaI	GACGC	1 cut(s)	228
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	5 cut(s)	136, 158, 475, 485, 509
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	109, 129, 408
Hpy188I	TCNGA	3 cut(s)	151, 417, 532
Hpy188III	TCNNGA	3 cut(s)	60, 482, 506
Hpy8I	GTNNAC	3 cut(s)	109, 129, 408
HpyAV	CCTTC	1 cut(s)	401
HpyCH4V	TGCA	2 cut(s)	341, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 428
HpyF3I	CTNAG	4 cut(s)	9, 372, 414, 435
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	5 cut(s)	136, 158, 475, 485, 509
Kzo9I	GATC	3 cut(s)	4, 310, 478
LpnPI	CCDG	3 cut(s)	371, 408, 457
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	2 cut(s)	60, 216
MaeIII	GTNAC	2 cut(s)	187, 304
MalI	GATC	3 cut(s)	6, 312, 480
MboI	GATC	3 cut(s)	4, 310, 478
MboII	GAAGA	5 cut(s)	49, 174, 237, 251, 488
MfeI	CAATTG	3 cut(s)	89, 195, 517
MflI	RGATCY	2 cut(s)	4, 310
MluCI	AATT	5 cut(s)	89, 102, 195, 517, 534
MlyI	GAGTC	1 cut(s)	184
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	3 cut(s)	207, 261, 544
MslI	CAYNNNNRTG	1 cut(s)	504
MunI	CAATTG	3 cut(s)	89, 195, 517
Mva1269I	GAATGC	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	350, 428
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	4, 310, 478
NlaIII	CATG	5 cut(s)	136, 158, 475, 485, 509
NlaIV	GGNNCC	2 cut(s)	6, 385
NmuCI	GTSAC	2 cut(s)	187, 304
NsiI	ATGCAT	1 cut(s)	433
PagI	TCATGA	2 cut(s)	481, 505
PctI	GAATGC	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	6, 385
PspPI	GGNCC	2 cut(s)	383, 441
PsuI	RGATCY	2 cut(s)	4, 310
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	207, 261, 544
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	3 cut(s)	4, 310, 478
Sau96I	GGNCC	2 cut(s)	383, 441
SchI	GAGTC	1 cut(s)	184
SetI	ASST	4 cut(s)	184, 217, 338, 530
SfaNI	GCATC	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	504
Sse9I	AATT	5 cut(s)	89, 102, 195, 517, 534
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	2 cut(s)	60, 216
StyI	CCWWGG	2 cut(s)	132, 459
TasI	AATT	5 cut(s)	89, 102, 195, 517, 534
TatI	WGTACW	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	207, 261, 544
Tru9I	TTAA	3 cut(s)	207, 261, 544
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	2 cut(s)	187, 304
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	2 cut(s)	187, 304
TspDTI	ATGAA	3 cut(s)	90, 441, 494
TspRI	CASTG	1 cut(s)	410
XapI	RAATTY	1 cut(s)	534
XbaI	TCTAGA	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	60, 216
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.