AT2G01180
ERF Family

PAP2 superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004265
Physical Location & Seq
Reverse (-)
106621 .. 108829
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01180.2

Sequence Viewer

Length: 984 bp
ATGACAATAGGGTCGTTTTTCTCTTCTCTCTTATTCTGGCGCAATTCTCAGGACCAGGAGGCGCAGAGAGGGAGGATGCAGGAGATAGATCTTAGTGTTCACACTATAAAGTCCCATGGAGGAAGAGTCGCTTCTAAACACAAGCACGATTGGATCATACTCGTCATCTTGATTGCCATCGAGATAGGCTTGAACCTCATCTCTCCTTTCTACCGCTACGTGGGAAAAGACATGATGACTGACCTCAAGTACCCTTTCAAGGACAACACCGTACCTATCTGGTCTGTCCCTGTGTACGCTGTGCTTCTTCCCATCATAGTGTTCGTCTGCTTCTACCTGAAGAGGACATGTGTGTACGATCTGCACCACAGCATCCTCGGGCTGCTCTTCGCCGTCTTGATAACTGGTGTCATCACTGACTCCATCAAGGTAGCCACCGGACGCCCTCGTCCTAACTTCTACTGGCGCTGCTTCCCCGACGGCAAAGAGCTGTATGATGCGTTGGGAGGTGTGGTATGCCACGGCAAGGCAGCTGAGGTCAAGGAAGGCCACAAGAGCTTCCCGAGCGGACACACTTCCTGGTCCTTTGCGGGGCTTACATTCCTTTCCCTTTACCTCTCTGGCAAAATCAAGGCCTTCAACAATGAAGGACATGTGGCGAAACTCTGCCTCGTGATCTTCCCTCTGCTTGCCGCTTGTCTTGTGGGGATATCTCGTGTGGATGACTACTGGCACCACTGGCAAGATGTCTTCGCAGGAGCTCTCATTGGCACCCTTGTAGCCGCCTTCTGCTACCGTCAGTTCTACCCCAACCCTTACCACGAAGAAGGATGGGGTCCCTACGCCTATTTCAAGGCAGCTCAAGAACGAGGAGTCCCTGTGACCTCCTCCCAAAACGGAGATGCCTTGAGGGCTATGTCTCTGCAGATGGATTCAACATCTCTCGAAAACATGGAATCTGGCACTTCCACCGCTCCCAGATGA

Protein Analysis

327

Amino Acids

36.68

Weight (kDa)

8.38

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 101 - 245 6.5e-33 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 10, 447
AccB1I GGYRCC 2 cut(s) 732, 770
AccBSI CCGCTC 2 cut(s) 567, 974
AciI CCGC 6 cut(s) 214, 567, 590, 693, 783, 972
AclWI GGATC 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 442
AfaI GTAC 4 cut(s) 251, 273, 296, 356
AfiI CCNNNNNNNGG 4 cut(s) 220, 259, 526, 591
AflIII ACRYGT 2 cut(s) 347, 652
AgsI TTSAA 5 cut(s) 193, 259, 640, 853, 936
AjnI CCWGG 2 cut(s) 54, 578
AloI GAACNNNNNNTCC 2 cut(s) 858, 890
AluBI AGCT 5 cut(s) 490, 533, 558, 761, 860
AluI AGCT 5 cut(s) 490, 533, 558, 761, 860
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 1 cut(s) 924
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 2 cut(s) 377, 562
AoxI GGCC 2 cut(s) 547, 633
ApeKI GCWGC 4 cut(s) 382, 468, 530, 857
AspLEI GCGC 3 cut(s) 42, 64, 468
AspS9I GGNCC 3 cut(s) 52, 582, 836
AvaI CYCGRG 2 cut(s) 377, 562
AvaII GGWCC 3 cut(s) 52, 582, 836
BanI GGYRCC 2 cut(s) 732, 770
BanII GRGCYC 1 cut(s) 763
BauI CACGAG 2 cut(s) 671, 714
BbsI GAAGAC 1 cut(s) 742
Bbv12I GWGCWC 1 cut(s) 763
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 4 cut(s) 369, 455, 542, 869
BccI CCATC 5 cut(s) 185, 320, 431, 825, 922
BceAI ACGGC 3 cut(s) 377, 496, 538
BciT130I CCWGG 2 cut(s) 56, 580
BcoDI GTCTC 1 cut(s) 924
BfmI CTRYAG 1 cut(s) 923
BfoI RGCGCY 1 cut(s) 469
BglI GCCNNNNNGGC 1 cut(s) 911
BglII AGATCT 1 cut(s) 88
BisI GCNGC 6 cut(s) 383, 469, 531, 693, 783, 858
BlsI GCNGC 6 cut(s) 384, 470, 532, 694, 784, 859
Bme1390I CCNGG 2 cut(s) 56, 580
Bme18I GGWCC 3 cut(s) 52, 582, 836
BmeT110I CYCGRG 2 cut(s) 377, 562
BmgT120I GGNCC 3 cut(s) 52, 582, 836
BmiI GGNNCC 4 cut(s) 734, 772, 837, 838
BmrFI CCNGG 2 cut(s) 56, 580
BmsI GCATC 4 cut(s) 66, 381, 487, 892
BpiI GAAGAC 1 cut(s) 742
Bpu10I CCTNAGC 1 cut(s) 534
BpuEI CTTGAG 3 cut(s) 230, 846, 928
BsaAI YACGTR 1 cut(s) 220
BsaBI GATNNNNATC 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 442
BsaJI CCNNGG 3 cut(s) 115, 376, 520
BsaWI WCCGGW 1 cut(s) 437
BsaXI ACNNNNNCTCC 6 cut(s) 111, 141, 498, 528, 864, 894
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 259, 526, 591
Bse1I ACTGG 4 cut(s) 409, 467, 734, 743
Bse8I GATNNNNATC 1 cut(s) 176
BseBI CCWGG 2 cut(s) 56, 580
BseDI CCNNGG 3 cut(s) 115, 376, 520
BseGI GGATG 4 cut(s) 81, 372, 727, 836
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 4 cut(s) 220, 259, 526, 591
BseMII CTCAG 2 cut(s) 62, 525
BseNI ACTGG 4 cut(s) 409, 467, 734, 743
BseRI GAGGAG 2 cut(s) 877, 885
BseXI GCAGC 4 cut(s) 369, 455, 542, 869
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 2 cut(s) 549, 635
BshNI GGYRCC 2 cut(s) 732, 770
BsiHKAI GWGCWC 1 cut(s) 763
BsiHKCI CYCGRG 2 cut(s) 377, 562
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 4 cut(s) 97, 272, 822, 860
BslI CCNNNNNNNGG 4 cut(s) 220, 259, 526, 591
BsmAI GTCTC 1 cut(s) 924
BsmFI GGGAC 4 cut(s) 97, 272, 822, 860
BsnI GGCC 2 cut(s) 549, 635
BsoBI CYCGRG 2 cut(s) 377, 562
Bsp1286I GDGCHC 1 cut(s) 763
Bsp143I GATC 4 cut(s) 88, 153, 358, 675
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 6 cut(s) 214, 567, 590, 693, 783, 972
BspANI GGCC 2 cut(s) 549, 635
BspCNI CTCAG 2 cut(s) 61, 526
BspLI GGNNCC 4 cut(s) 734, 772, 837, 838
BspMAI CTGCAG 1 cut(s) 927
BspPI GGATC 1 cut(s) 161
BspQI GCTCTTC 1 cut(s) 392
BspT107I GGYRCC 2 cut(s) 732, 770
BsrBI CCGCTC 2 cut(s) 567, 974
BsrI ACTGG 4 cut(s) 409, 467, 734, 743
BssECI CCNNGG 3 cut(s) 115, 376, 520
BssMI GATC 4 cut(s) 88, 153, 358, 675
BssNI GRCGYC 1 cut(s) 442
BssSI CACGAG 2 cut(s) 671, 714
BssT1I CCWWGG 1 cut(s) 115
Bst2BI CACGAG 2 cut(s) 671, 714
Bst2UI CCWGG 2 cut(s) 56, 580
Bst4CI ACNGT 2 cut(s) 271, 797
Bst6I CTCTTC 4 cut(s) 28, 118, 335, 392
BstACI GRCGYC 1 cut(s) 442
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 690
BstDEI CTNAG 3 cut(s) 48, 92, 534
BstDSI CCRYGG 2 cut(s) 115, 520
BstF5I GGATG 4 cut(s) 81, 372, 727, 836
BstH2I RGCGCY 1 cut(s) 469
BstHHI GCGC 3 cut(s) 42, 64, 468
BstKTI GATC 4 cut(s) 91, 156, 361, 678
BstMAI GTCTC 1 cut(s) 924
BstMBI GATC 4 cut(s) 88, 153, 358, 675
BstMWI GCNNNNNNNGC 4 cut(s) 555, 564, 739, 911
BstNI CCWGG 2 cut(s) 56, 580
BstNSI RCATGY 2 cut(s) 351, 656
BstSCI CCNGG 2 cut(s) 54, 578
BstSFI CTRYAG 1 cut(s) 923
BstV1I GCAGC 4 cut(s) 369, 455, 542, 869
BstV2I GAAGAC 1 cut(s) 742
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 2 cut(s) 549, 635
BtgI CCRYGG 2 cut(s) 115, 520
BtsCI GGATG 4 cut(s) 81, 372, 727, 836
BtsIMutI CAGTG 2 cut(s) 414, 736
Cac8I GCNNGC 1 cut(s) 690
CfoI GCGC 3 cut(s) 42, 64, 468
Cfr13I GGNCC 3 cut(s) 52, 582, 836
CseI GACGC 1 cut(s) 450
Csp6I GTAC 4 cut(s) 250, 272, 295, 355
CviAII CATG 5 cut(s) 116, 232, 348, 653, 952
CviQI GTAC 4 cut(s) 250, 272, 295, 355
DdeI CTNAG 3 cut(s) 48, 92, 534
DpnI GATC 4 cut(s) 90, 155, 360, 677
DpnII GATC 4 cut(s) 88, 153, 358, 675
DrdI GACNNNNNNGTC 2 cut(s) 10, 447
DseDI GACNNNNNNGTC 2 cut(s) 10, 447
Eam1104I CTCTTC 4 cut(s) 28, 118, 335, 392
EarI CTCTTC 4 cut(s) 28, 118, 335, 392
Ecl136II GAGCTC 1 cut(s) 761
Eco130I CCWWGG 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 763
Eco32I GATATC 1 cut(s) 711
Eco47I GGWCC 3 cut(s) 52, 582, 836
Eco53kI GAGCTC 1 cut(s) 761
Eco57I CTGAAG 1 cut(s) 359
Eco88I CYCGRG 2 cut(s) 377, 562
EcoICRI GAGCTC 1 cut(s) 761
EcoO109I RGGNCCY 1 cut(s) 836
EcoRII CCWGG 2 cut(s) 54, 578
EcoRV GATATC 1 cut(s) 711
EcoT14I CCWWGG 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 763
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 5 cut(s) 119, 235, 351, 656, 955
FalI AAGNNNNNCTT 2 cut(s) 115, 147
FaqI GGGAC 4 cut(s) 97, 272, 822, 860
FatI CATG 5 cut(s) 115, 231, 347, 652, 951
FauI CCCGC 1 cut(s) 583
Fnu4HI GCNGC 6 cut(s) 383, 469, 531, 693, 783, 858
FokI GGATG 4 cut(s) 88, 359, 734, 843
FriOI GRGCYC 1 cut(s) 763
Fsp4HI GCNGC 6 cut(s) 383, 469, 531, 693, 783, 858
GlaI GCGC 3 cut(s) 41, 63, 467
GluI GCNGC 6 cut(s) 383, 469, 531, 693, 783, 858
HaeII RGCGCY 1 cut(s) 469
HaeIII GGCC 2 cut(s) 549, 635
HapII CCGG 1 cut(s) 438
HgaI GACGC 1 cut(s) 450
HhaI GCGC 3 cut(s) 42, 64, 468
Hin1I GRCGYC 1 cut(s) 442
Hin1II CATG 5 cut(s) 119, 235, 351, 656, 955
Hin6I GCGC 3 cut(s) 40, 62, 466
HinP1I GCGC 3 cut(s) 40, 62, 466
HinfI GANTC 5 cut(s) 126, 419, 873, 932, 956
HpaII CCGG 1 cut(s) 438
Hpy166II GTNNAC 3 cut(s) 100, 295, 355
Hpy188III TCNNGA 8 cut(s) 50, 169, 181, 397, 562, 673, 863, 944
Hpy8I GTNNAC 3 cut(s) 100, 295, 355
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 5 cut(s) 539, 641, 646, 796, 821
HpyCH4III ACNGT 2 cut(s) 271, 797
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 3 cut(s) 79, 364, 925
HpyF10VI GCNNNNNNNGC 4 cut(s) 555, 564, 739, 911
HpyF3I CTNAG 3 cut(s) 48, 92, 534
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 442
Hsp92II CATG 5 cut(s) 119, 235, 351, 656, 955
HspAI GCGC 3 cut(s) 40, 62, 466
KflI GGGWCCC 1 cut(s) 836
Kzo9I GATC 4 cut(s) 88, 153, 358, 675
LguI GCTCTTC 1 cut(s) 392
LmnI GCTCC 2 cut(s) 758, 979
Lsp1109I GCAGC 4 cut(s) 369, 455, 542, 869
LweI GCATC 4 cut(s) 66, 381, 487, 892
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 880
MalI GATC 4 cut(s) 90, 155, 360, 677
MbiI CCGCTC 2 cut(s) 567, 974
MboI GATC 4 cut(s) 88, 153, 358, 675
MboII GAAGA 8 cut(s) 15, 135, 299, 352, 379, 670, 742, 836
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 763
MluCI AATT 1 cut(s) 43
MlyI GAGTC 3 cut(s) 135, 413, 882
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 2 cut(s) 56, 580
MvaI CCWGG 2 cut(s) 56, 580
MwoI GCNNNNNNNGC 4 cut(s) 555, 564, 739, 911
NcoI CCATGG 1 cut(s) 115
NdeII GATC 4 cut(s) 88, 153, 358, 675
NlaIII CATG 5 cut(s) 119, 235, 351, 656, 955
NlaIV GGNNCC 4 cut(s) 734, 772, 837, 838
NmuCI GTSAC 1 cut(s) 880
NspI RCATGY 2 cut(s) 351, 656
PceI AGGCCT 1 cut(s) 635
PciI ACATGT 2 cut(s) 347, 652
PciSI GCTCTTC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 932, 956
PkrI GCNGC 6 cut(s) 384, 470, 532, 694, 784, 859
PleI GAGTC 3 cut(s) 134, 413, 881
PpsI GAGTC 3 cut(s) 134, 413, 881
Ppu21I YACGTR 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 836
PscI ACATGT 2 cut(s) 347, 652
Psp124BI GAGCTC 1 cut(s) 763
Psp5II RGGWCCY 1 cut(s) 836
Psp6I CCWGG 2 cut(s) 54, 578
PspGI CCWGG 2 cut(s) 54, 578
PspN4I GGNNCC 4 cut(s) 734, 772, 837, 838
PspPI GGNCC 3 cut(s) 52, 582, 836
PspPPI RGGWCCY 1 cut(s) 836
PstI CTGCAG 1 cut(s) 927
PsuI RGATCY 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 4 cut(s) 251, 273, 296, 356
RsaNI GTAC 4 cut(s) 250, 272, 295, 355
RseI CAYNNNNRTG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 763
SapI GCTCTTC 1 cut(s) 392
SatI GCNGC 6 cut(s) 383, 469, 531, 693, 783, 858
Sau3AI GATC 4 cut(s) 88, 153, 358, 675
Sau96I GGNCC 3 cut(s) 52, 582, 836
SchI GAGTC 3 cut(s) 135, 413, 882
ScrFI CCNGG 2 cut(s) 56, 580
SduI GDGCHC 1 cut(s) 763
SfaNI GCATC 4 cut(s) 66, 381, 487, 892
SfcI CTRYAG 1 cut(s) 923
SinI GGWCC 3 cut(s) 52, 582, 836
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 3 cut(s) 245, 861, 907
SmoI CTYRAG 3 cut(s) 245, 861, 907
Sse9I AATT 1 cut(s) 43
SseBI AGGCCT 1 cut(s) 635
SsiI CCGC 6 cut(s) 214, 567, 590, 693, 783, 972
SstI GAGCTC 1 cut(s) 763
StuI AGGCCT 1 cut(s) 635
StyD4I CCNGG 2 cut(s) 54, 578
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 2 cut(s) 271, 797
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 180, 945
TasI AATT 1 cut(s) 43
TauI GCSGC 2 cut(s) 695, 785
TfiI GAWTC 2 cut(s) 932, 956
TscAI CASTG 2 cut(s) 421, 743
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 4 cut(s) 382, 468, 530, 857
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 1 cut(s) 660
TspGWI ACGGA 1 cut(s) 912
TspRI CASTG 2 cut(s) 421, 743
VpaK11BI GGWCC 3 cut(s) 52, 582, 836
XceI RCATGY 2 cut(s) 351, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.