Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000459.1

Orthogroup ID

OG0004265

Physical Location & Seq

Genomic Coordinates Reverse (-)

124021 .. 126140

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000459.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgggttggcggaatcttggatccctttttccttatttccgcaatctctttaacttccaggtgcagggtgatcaaccgggcacgtacaccatcaagtctcatggagccgcggttgccaagaaccacaagcatgactggctcatactcgtgcttcttgggttgatcgagatagtcttgtatatcattcaacctttccaccgttttgtggggaaggatatgatgactgaccttaagtaccccatgaaagcaaacactgtccctgtttgggctgttcctatgtatgcagtcttggttcctattgccatttttcttttcttctatgcgcgtaggagagatgtgtatgatcttcaccacagcattcttggcctgttgtttgctgtgttggttaccgctgtcattactgattcaataaaaaatggagttgggcgtcctagaccagatttcttttggcgttgctttcctgatggaatcgataattatgataagtggggagatgtggtgtgccatggtaaggccaaggacataaaggaaggacacaagagtttcccgagtggccatacttcatggtcctttgcaggcttatgcttccttgccttgtacttgagtggaaagattaaagtgtttgatcgaaaagggcatgttgcgaaactatgcattgtctcccttcctctactggttgcatctctcgttgcagtgtccagagtatctgactattggcaccattggcaagatgtgtttgctggaggtcttttaggatttgttgtggctgcattttgctaccggcagttcttccctgccccttatcatgatcaaggatggggtccttatgcatatttccaagcattggaggagacgcgtagcaattcaagctcatcgtccactgcaaatgcactcagtgtgcaggtcatgggggttcagaacgttactcaacctgttcctgcaccaaatggtgttgcattttcatcatatgcttcaaatcaatatacaagccttaagctagatgaaatggaatctgggaggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

341

Amino Acids

38.36

Weight (kDa)

9.15

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180
fragaria_vesca	FvH4_4g26641
malus_domestica	MD13G1034800.v1.1 MD16G1036500.v1.1
prunus_persica	Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1
pyrus_communis	pycom13g03040 pycom16g03160
rosa_chinensis	RchiOBHm_Chr4g0434341
rosa_laevigata	RLG00000006681
rosa_multiflora	Rmu_sc0000459.1_g000028
rosa_roxburghii	Rroxscaffold_5G00375710
rosa_rugosa	Rorug04G0276000 Rorug04G0276100 Rorug04G0276100 Rorug04G0276200
rosa_samantha	Rh4AG331300 Rh4BG339200 Rh4CG354300 Rh4DG334300
rosa_wichuraiana	Rw4G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	892
AccB1I	GGYRCC	1 cut(s)	717
AccB7I	CCANNNNNTGG	1 cut(s)	844
AccII	CGCG	3 cut(s)	110, 325, 856
AciI	CCGC	5 cut(s)	10, 40, 108, 110, 390
AclI	AACGTT	1 cut(s)	921
AclWI	GGATC	2 cut(s)	15, 28
AcoI	YGGCCR	1 cut(s)	553
AcyI	GRCGYC	1 cut(s)	427
AdeI	CACNNNGTG	1 cut(s)	896
AfaI	GTAC	3 cut(s)	86, 236, 599
AfiI	CCNNNNNNNGG	5 cut(s)	64, 205, 265, 511, 844
AflII	CTTAAG	2 cut(s)	230, 992
AflIII	ACRYGT	1 cut(s)	854
AgsI	TTSAA	4 cut(s)	188, 408, 867, 975
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	870, 997
AluI	AGCT	2 cut(s)	870, 997
Alw26I	GTCTC	3 cut(s)	102, 664, 845
AlwI	GGATC	2 cut(s)	15, 28
Ama87I	CYCGRG	1 cut(s)	547
AoxI	GGCC	3 cut(s)	364, 513, 553
ApeKI	GCWGC	1 cut(s)	767
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	2 cut(s)	567, 821
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	80, 341
AvaI	CYCGRG	1 cut(s)	547
AvaII	GGWCC	2 cut(s)	567, 821
BaeGI	GKGCMC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	717
BauI	CACGAG	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	754
BccI	CCATC	3 cut(s)	98, 458, 810
BciT130I	CCWGG	1 cut(s)	59
BclI	TGATCA	2 cut(s)	70, 808
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	3 cut(s)	102, 664, 845
BfaI	CTAG	2 cut(s)	432, 998
BfrI	CTTAAG	2 cut(s)	230, 992
BfuAI	ACCTGC	1 cut(s)	892
BisI	GCNGC	2 cut(s)	108, 768
BlsI	GCNGC	2 cut(s)	109, 769
Bme1390I	CCNGG	2 cut(s)	59, 78
Bme18I	GGWCC	2 cut(s)	567, 821
BmeT110I	CYCGRG	1 cut(s)	547
BmgT120I	GGNCC	2 cut(s)	567, 821
BmiI	GGNNCC	5 cut(s)	22, 106, 294, 719, 822
BmrFI	CCNGG	2 cut(s)	59, 78
BmsI	GCATC	1 cut(s)	689
BpmI	CTGGAG	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	622
BpuMI	CCSGG	1 cut(s)	78
Bsa29I	ATCGAT	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	427
BsaJI	CCNNGG	3 cut(s)	108, 505, 516
BsaXI	ACNNNNNCTCC	4 cut(s)	96, 126, 483, 513
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 205, 265, 511, 844
Bse118I	RCCGGY	1 cut(s)	780
Bse1I	ACTGG	2 cut(s)	140, 678
BseBI	CCWGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	3 cut(s)	108, 505, 516
BseGI	GGATG	1 cut(s)	821
BseLI	CCNNNNNNNGG	5 cut(s)	64, 205, 265, 511, 844
BseMII	CTCAG	1 cut(s)	907
BseNI	ACTGG	2 cut(s)	140, 678
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	754
BsgI	GTGCAG	3 cut(s)	83, 920, 924
Bsh1236I	CGCG	3 cut(s)	110, 325, 856
BshFI	GGCC	3 cut(s)	366, 515, 555
BshNI	GGYRCC	1 cut(s)	717
BshVI	ATCGAT	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	547
BsiSI	CCGG	2 cut(s)	77, 781
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	5 cut(s)	64, 205, 265, 511, 844
BsmAI	GTCTC	3 cut(s)	102, 664, 845
BsmBI	CGTCTC	1 cut(s)	845
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	366, 515, 555
BsoBI	CYCGRG	1 cut(s)	547
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	6 cut(s)	20, 70, 162, 343, 625, 808
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	5 cut(s)	10, 40, 108, 110, 390
BspANI	GGCC	3 cut(s)	366, 515, 555
BspCNI	CTCAG	1 cut(s)	906
BspDI	ATCGAT	1 cut(s)	471
BspFNI	CGCG	3 cut(s)	110, 325, 856
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	5 cut(s)	22, 106, 294, 719, 822
BspMI	ACCTGC	1 cut(s)	892
BspPI	GGATC	2 cut(s)	15, 28
BspT107I	GGYRCC	1 cut(s)	717
BspTI	CTTAAG	2 cut(s)	230, 992
BsrFI	RCCGGY	1 cut(s)	780
BsrI	ACTGG	2 cut(s)	140, 678
BssAI	RCCGGY	1 cut(s)	780
BssECI	CCNNGG	3 cut(s)	108, 505, 516
BssMI	GATC	6 cut(s)	20, 70, 162, 343, 625, 808
BssNI	GRCGYC	1 cut(s)	427
BssSI	CACGAG	1 cut(s)	146
BssT1I	CCWWGG	2 cut(s)	505, 516
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	2 cut(s)	200, 256
BstACI	GRCGYC	1 cut(s)	427
BstAFI	CTTAAG	2 cut(s)	230, 992
BstBAI	YACGTR	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	1 cut(s)	893
BstDSI	CCRYGG	2 cut(s)	108, 505
BstEII	GGTNACC	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	821
BstFNI	CGCG	3 cut(s)	110, 325, 856
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	6 cut(s)	23, 73, 165, 346, 628, 811
BstMAI	GTCTC	3 cut(s)	102, 664, 845
BstMBI	GATC	6 cut(s)	20, 70, 162, 343, 625, 808
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 136, 363, 724, 867
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	641
BstPI	GGTNACC	1 cut(s)	385
BstSCI	CCNGG	2 cut(s)	57, 76
BstSLI	GKGCMC	1 cut(s)	83
BstUI	CGCG	3 cut(s)	110, 325, 856
BstV1I	GCAGC	1 cut(s)	754
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	366, 515, 555
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	2 cut(s)	108, 505
BtsCI	GGATG	1 cut(s)	821
BtsI	GCAGTG	2 cut(s)	699, 879
BtsIMutI	CAGTG	4 cut(s)	252, 699, 879, 901
BveI	ACCTGC	1 cut(s)	892
Cac8I	GCNNGC	1 cut(s)	577
CciI	TCATGA	1 cut(s)	805
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	780
Cfr13I	GGNCC	2 cut(s)	567, 821
Cfr42I	CCGCGG	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	471
CseI	GACGC	2 cut(s)	416, 862
Csp6I	GTAC	3 cut(s)	85, 235, 598
CviAII	CATG	8 cut(s)	101, 131, 241, 506, 564, 638, 806, 907
CviQI	GTAC	3 cut(s)	85, 235, 598
DdeI	CTNAG	1 cut(s)	893
DpnI	GATC	6 cut(s)	22, 72, 164, 345, 627, 810
DpnII	GATC	6 cut(s)	20, 70, 162, 343, 625, 808
DraIII	CACNNNGTG	1 cut(s)	896
EaeI	YGGCCR	1 cut(s)	553
EciI	GGCGGA	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	505, 516
Eco47I	GGWCC	2 cut(s)	567, 821
Eco88I	CYCGRG	1 cut(s)	547
Eco91I	GGTNACC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	821
EcoO65I	GGTNACC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	505, 516
EcoT22I	ATGCAT	2 cut(s)	656, 832
ErhI	CCWWGG	2 cut(s)	505, 516
Esp3I	CGTCTC	1 cut(s)	845
FaeI	CATG	8 cut(s)	104, 134, 244, 509, 567, 641, 809, 910
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	8 cut(s)	100, 130, 240, 505, 563, 637, 805, 906
FauNDI	CATATG	1 cut(s)	967
FbaI	TGATCA	2 cut(s)	70, 808
Fnu4HI	GCNGC	2 cut(s)	108, 768
FokI	GGATG	1 cut(s)	828
Fsp4HI	GCNGC	2 cut(s)	108, 768
FspBI	CTAG	2 cut(s)	432, 998
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	2 cut(s)	108, 768
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	3 cut(s)	366, 515, 555
HapII	CCGG	2 cut(s)	77, 781
HgaI	GACGC	2 cut(s)	416, 862
HhaI	GCGC	1 cut(s)	325
Hin1I	GRCGYC	1 cut(s)	427
Hin1II	CATG	8 cut(s)	104, 134, 244, 509, 567, 641, 809, 910
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	4 cut(s)	13, 404, 468, 1010
HpaII	CCGG	2 cut(s)	77, 781
HphI	GGTGA	2 cut(s)	80, 341
Hpy166II	GTNNAC	2 cut(s)	87, 879
Hpy188I	TCNGA	2 cut(s)	709, 918
Hpy188III	TCNNGA	5 cut(s)	166, 461, 547, 699, 806
Hpy8I	GTNNAC	2 cut(s)	87, 879
HpyAV	CCTTC	3 cut(s)	205, 524, 674
HpyCH4III	ACNGT	2 cut(s)	200, 256
HpyCH4IV	ACGT	2 cut(s)	83, 921
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 136, 363, 724, 867
HpyF3I	CTNAG	1 cut(s)	893
HpySE526I	ACGT	2 cut(s)	83, 921
Hsp92I	GRCGYC	1 cut(s)	427
Hsp92II	CATG	8 cut(s)	104, 134, 244, 509, 567, 641, 809, 910
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	2 cut(s)	70, 808
KspI	CCGCGG	1 cut(s)	111
Kzo9I	GATC	6 cut(s)	20, 70, 162, 343, 625, 808
LmnI	GCTCC	1 cut(s)	104
Lsp1109I	GCAGC	1 cut(s)	754
LweI	GCATC	1 cut(s)	689
MaeI	CTAG	2 cut(s)	432, 998
MaeII	ACGT	2 cut(s)	83, 921
MaeIII	GTNAC	2 cut(s)	385, 922
MalI	GATC	6 cut(s)	22, 72, 164, 345, 627, 810
MboI	GATC	6 cut(s)	20, 70, 162, 343, 625, 808
MboII	GAAGA	3 cut(s)	307, 338, 781
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	2 cut(s)	475, 862
MluI	ACGCGT	1 cut(s)	854
MluNI	TGGCCA	1 cut(s)	555
MnlI	CCTC	5 cut(s)	678, 737, 841, 1011, 1014
Mox20I	TGGCCA	1 cut(s)	555
Mph1103I	ATGCAT	2 cut(s)	656, 832
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	4 cut(s)	51, 231, 615, 993
MslI	CAYNNNNRTG	2 cut(s)	129, 146
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	110, 392
MspCI	CTTAAG	2 cut(s)	230, 992
MspI	CCGG	2 cut(s)	77, 781
MspR9I	CCNGG	2 cut(s)	59, 78
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	3 cut(s)	110, 325, 856
MwoI	GCNNNNNNNGC	5 cut(s)	113, 136, 363, 724, 867
NciI	CCSGG	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	505
NdeI	CATATG	1 cut(s)	967
NdeII	GATC	6 cut(s)	20, 70, 162, 343, 625, 808
NlaIII	CATG	8 cut(s)	104, 134, 244, 509, 567, 641, 809, 910
NlaIV	GGNNCC	5 cut(s)	22, 106, 294, 719, 822
NsiI	ATGCAT	2 cut(s)	656, 832
NspI	RCATGY	1 cut(s)	641
PagI	TCATGA	1 cut(s)	805
PctI	GAATGC	1 cut(s)	357
PfeI	GAWTC	4 cut(s)	13, 404, 468, 1010
PflMI	CCANNNNNTGG	1 cut(s)	844
PkrI	GCNGC	2 cut(s)	109, 769
Ppu21I	YACGTR	1 cut(s)	84
PpuMI	RGGWCCY	1 cut(s)	821
Psp1406I	AACGTT	1 cut(s)	921
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	57
PspEI	GGTNACC	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	5 cut(s)	22, 106, 294, 719, 822
PspPI	GGNCC	2 cut(s)	567, 821
PspPPI	RGGWCCY	1 cut(s)	821
PsuI	RGATCY	1 cut(s)	20
RsaI	GTAC	3 cut(s)	86, 236, 599
RsaNI	GTAC	3 cut(s)	85, 235, 598
RseI	CAYNNNNRTG	2 cut(s)	129, 146
SacII	CCGCGG	1 cut(s)	111
SaqAI	TTAA	4 cut(s)	51, 231, 615, 993
SatI	GCNGC	2 cut(s)	108, 768
Sau3AI	GATC	6 cut(s)	20, 70, 162, 343, 625, 808
Sau96I	GGNCC	2 cut(s)	567, 821
ScrFI	CCNGG	2 cut(s)	59, 78
SduI	GDGCHC	1 cut(s)	83
SfaNI	GCATC	1 cut(s)	689
Sfr303I	CCGCGG	1 cut(s)	111
SgrBI	CCGCGG	1 cut(s)	111
SinI	GGWCC	2 cut(s)	567, 821
SmiMI	CAYNNNNRTG	2 cut(s)	129, 146
SmlI	CTYRAG	3 cut(s)	230, 601, 992
SmoI	CTYRAG	3 cut(s)	230, 601, 992
Sse9I	AATT	2 cut(s)	475, 862
SsiI	CCGC	5 cut(s)	10, 40, 108, 110, 390
SspMI	CTAG	2 cut(s)	432, 998
StyD4I	CCNGG	2 cut(s)	57, 76
StyI	CCWWGG	2 cut(s)	505, 516
TaaI	ACNGT	2 cut(s)	200, 256
TaiI	ACGT	2 cut(s)	86, 924
TaqI	TCGA	3 cut(s)	165, 471, 628
TasI	AATT	2 cut(s)	475, 862
TatI	WGTACW	1 cut(s)	597
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	4 cut(s)	13, 404, 468, 1010
Tru1I	TTAA	4 cut(s)	51, 231, 615, 993
Tru9I	TTAA	4 cut(s)	51, 231, 615, 993
TscAI	CASTG	4 cut(s)	259, 699, 886, 901
TseI	GCWGC	1 cut(s)	767
TspDTI	ATGAA	4 cut(s)	257, 552, 951, 1017
TspRI	CASTG	4 cut(s)	259, 699, 886, 901
Van91I	CCANNNNNTGG	1 cut(s)	844
Vha464I	CTTAAG	2 cut(s)	230, 992
VpaK11BI	GGWCC	2 cut(s)	567, 821
XceI	RCATGY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	2 cut(s)	359, 444
XspI	CTAG	2 cut(s)	432, 998
Zsp2I	ATGCAT	2 cut(s)	656, 832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.