Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004265

Physical Location & Seq

Genomic Coordinates Reverse (-)

44840611 .. 44842026

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0276000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTTGGATCCGTGCGATAAGCTGAGTGATCAGGGATCAGAGTCGGAGGACATGAACATCATCAAACACCCAAATGAAGGCTCATCGGAAGAAGGCCAGAAGAGGACATGCTTCGATTGCGGCACCTCCAAAACCCCTTTGTGGAGAGGCGGTCCAGCCGGGCCTAAGTCGCTATGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGGAGGGCCATTTTGGGCATAAACAAAAGCGGGGCTGGCGGCGGCAGCGGCAGCGCAGATGAAAATCGAAAGGGGAAAAAGAGCAGTAGCAACAAGCAGCTCGGAGACGGCTTGAAACAGAGGCTATTGGCTCTGGGAAGAGAGGTGTTGATGCAGAGATCGACGGTGGAGAGGCAGCGGAGGAAGTTGGGCGAAGAAGAACAAGCGGCTGTGCTACTGATGGCTCTTTCTTATGGCTCTGTATCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

152

Amino Acids

16.29

Weight (kDa)

9.56

Isoelectric Point (pI)

59.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	37 - 71	2.1e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180
fragaria_vesca	FvH4_4g26641
malus_domestica	MD13G1034800.v1.1 MD16G1036500.v1.1
prunus_persica	Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1
pyrus_communis	pycom13g03040 pycom16g03160
rosa_chinensis	RchiOBHm_Chr4g0434341
rosa_laevigata	RLG00000006681
rosa_multiflora	Rmu_sc0000459.1_g000028
rosa_roxburghii	Rroxscaffold_5G00375710
rosa_rugosa	Rorug04G0276000 Rorug04G0276100 Rorug04G0276100 Rorug04G0276200
rosa_samantha	Rh4AG331300 Rh4BG339200 Rh4CG354300 Rh4DG334300
rosa_wichuraiana	Rw4G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AciI	CCGC	8 cut(s)	120, 150, 237, 246, 249, 255, 385, 413
AclWI	GGATC	4 cut(s)	2, 15, 43, 197
AfiI	CCNNNNNNNGG	2 cut(s)	77, 141
AgsI	TTSAA	1 cut(s)	322
AluBI	AGCT	2 cut(s)	22, 307
AluI	AGCT	2 cut(s)	22, 307
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	4 cut(s)	2, 15, 43, 197
AoxI	GGCC	3 cut(s)	94, 161, 213
ApeKI	GCWGC	4 cut(s)	252, 258, 304, 382
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	3 cut(s)	152, 161, 213
AsuC2I	CCSGG	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	4 cut(s)	264, 270, 316, 394
BccI	CCATC	1 cut(s)	421
BceAI	ACGGC	1 cut(s)	331
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	306
BisI	GCNGC	9 cut(s)	121, 247, 250, 253, 256, 259, 305, 383, 414
BlsI	GCNGC	9 cut(s)	122, 248, 251, 254, 257, 260, 306, 384, 415
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	152, 161, 213
BmiI	GGNNCC	2 cut(s)	9, 124
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 141
Bse3DI	GCAATG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	270
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	77, 141
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	4 cut(s)	264, 270, 316, 394
BshFI	GGCC	3 cut(s)	96, 163, 215
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	77, 141
BsmAI	GTCTC	1 cut(s)	306
BsmBI	CGTCTC	1 cut(s)	306
BsnI	GGCC	3 cut(s)	96, 163, 215
Bsp143I	GATC	5 cut(s)	7, 28, 35, 189, 365
BspACI	CCGC	8 cut(s)	120, 150, 237, 246, 249, 255, 385, 413
BspANI	GGCC	3 cut(s)	96, 163, 215
BspCNI	CTCAG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	9, 124
BspPI	GGATC	4 cut(s)	2, 15, 43, 197
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	184
BssMI	GATC	5 cut(s)	7, 28, 35, 189, 365
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	3 cut(s)	95, 200, 340
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	23, 165, 456
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	5 cut(s)	10, 31, 38, 192, 368
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	5 cut(s)	7, 28, 35, 189, 365
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 169, 243, 252, 255, 258
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	158
BstV1I	GCAGC	4 cut(s)	264, 270, 316, 394
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	96, 163, 215
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	3 cut(s)	152, 161, 213
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	2 cut(s)	52, 108
DdeI	CTNAG	3 cut(s)	23, 165, 456
DpnI	GATC	5 cut(s)	9, 30, 37, 191, 367
DpnII	GATC	5 cut(s)	7, 28, 35, 189, 365
Eam1104I	CTCTTC	3 cut(s)	95, 200, 340
EarI	CTCTTC	3 cut(s)	95, 200, 340
Eco47I	GGWCC	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	2 cut(s)	55, 111
FaiI	YATR	5 cut(s)	53, 109, 175, 227, 441
FatI	CATG	2 cut(s)	51, 107
FauI	CCCGC	1 cut(s)	230
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	9 cut(s)	121, 247, 250, 253, 256, 259, 305, 383, 414
Fsp4HI	GCNGC	9 cut(s)	121, 247, 250, 253, 256, 259, 305, 383, 414
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	9 cut(s)	121, 247, 250, 253, 256, 259, 305, 383, 414
HaeIII	GGCC	3 cut(s)	96, 163, 215
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	2 cut(s)	55, 111
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	159
Hpy188I	TCNGA	5 cut(s)	40, 46, 88, 194, 311
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	71, 86
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	2 cut(s)	177, 361
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 169, 243, 252, 255, 258
HpyF3I	CTNAG	3 cut(s)	23, 165, 456
Hsp92II	CATG	2 cut(s)	55, 111
HspAI	GCGC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	7, 28, 35, 189, 365
LpnPI	CCDG	7 cut(s)	17, 110, 168, 172, 184, 228, 326
Lsp1109I	GCAGC	4 cut(s)	264, 270, 316, 394
LweI	GCATC	1 cut(s)	348
MalI	GATC	5 cut(s)	9, 30, 37, 191, 367
MboI	GATC	5 cut(s)	7, 28, 35, 189, 365
MboII	GAAGA	7 cut(s)	101, 112, 214, 217, 357, 413, 416
MflI	RGATCY	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	72
MspA1I	CMGCKG	2 cut(s)	255, 385
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	6 cut(s)	117, 169, 243, 252, 255, 258
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	5 cut(s)	7, 28, 35, 189, 365
NlaIII	CATG	2 cut(s)	55, 111
NlaIV	GGNNCC	2 cut(s)	9, 124
NspI	RCATGY	1 cut(s)	111
PkrI	GCNGC	9 cut(s)	122, 248, 251, 254, 257, 260, 306, 384, 415
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	9, 124
PspPI	GGNCC	3 cut(s)	152, 161, 213
PsuI	RGATCY	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	72
SatI	GCNGC	9 cut(s)	121, 247, 250, 253, 256, 259, 305, 383, 414
Sau3AI	GATC	5 cut(s)	7, 28, 35, 189, 365
Sau96I	GGNCC	3 cut(s)	152, 161, 213
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	4 cut(s)	24, 128, 309, 354
SfaNI	GCATC	1 cut(s)	348
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	72
SsiI	CCGC	8 cut(s)	120, 150, 237, 246, 249, 255, 385, 413
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	3 cut(s)	114, 274, 368
TauI	GCSGC	5 cut(s)	123, 249, 252, 258, 416
TseI	GCWGC	4 cut(s)	252, 258, 304, 382
TspDTI	ATGAA	3 cut(s)	68, 90, 282
VpaK11BI	GGWCC	1 cut(s)	152
XceI	RCATGY	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.