Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004265

Physical Location & Seq

Genomic Coordinates Reverse (-)

2068801 .. 2070802

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCGTGGAGGAATCTAGGATCTCTTTTTAACTTCCGGGGTATCTTTCAGGGAAGAACCCCGGAGATCGAACTGGGACGAAGGTACACGATTAAATCCCATGGAGCTGCACTTGCAAAGAACCACATGTACGATTGGCTTATACTGCTGCTCCTTGCAGTGATAGAGCTCATTTTGTTCATCATTTATCCGTTCTACCGTTTTGTGGGGAAGGATATGATGGAAGACCTTAGATATCCCATGAAAGCGAACACGGTACCTGTGTGGGCTGTCCCTATGTACTCGGTTTTGTTGCCTATTGTGATTTTCCTCTTTTTCTATATGCGTCGGAAAGATGTCCATGATCTGCACCATAGCATTCTTGGCCTCTTGTTCGCCGTGCTGATTACTGGTGTTATCACGGATGCAATAAAAAATGCTGTTGGCCGGCCTCGACCAGACTTCTTTTGGCGTTGCTTTCCTGATGGAAAAGATGTTTATGATCAGTTTGGGGGTGTAGTGTGCCATGGTAAGGACAGTGACATAAAGGAAGGACATAAGAGTTTTCCAAGTGGTCACGCTTCATGGTCCTTTGCAGGTTTAGGATTTCTCTCGTTGTACTTGTGCGGGAAGATTAAAGCATTTGATCGCAAAGGGCATGTGGCGAAACTATGTATTGTCTTGCTTCCTCTCCTTGCTGCATCTCTCGTTGCCATTTCAAGAGTAGATGACTATTGGCACCATTGGCAAGATGTGTTTGCTGGAGGTCTCTTAGGACTTGTTGTGGCTTCATTTTGTTACCGGCAATTCTTCCCTTCCCCTTATCATGATCAAGGATGGGGTCCTTATGCGTATTTCTCCGCTTTGGAGGAGACGCGTATCCTTTCACATCTGGGTGTCAATCCTACGAACAATGCACCGAGTGTGCAGGTAACGGGGGCTCAGAATGTGAACGAACAACACATACAAAATAGCGATGCATATGCAGCATTCTCTGGAAACCGATACACAAGCATTAGGCTGCATGAAATGGAATCAGGCGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

343

Amino Acids

38.73

Weight (kDa)

8.84

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180
fragaria_vesca	FvH4_4g26641
malus_domestica	MD13G1034800.v1.1 MD16G1036500.v1.1
prunus_persica	Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1
pyrus_communis	pycom13g03040 pycom16g03160
rosa_chinensis	RchiOBHm_Chr4g0434341
rosa_laevigata	RLG00000006681
rosa_multiflora	Rmu_sc0000459.1_g000028
rosa_roxburghii	Rroxscaffold_5G00375710
rosa_rugosa	Rorug04G0276000 Rorug04G0276100 Rorug04G0276100 Rorug04G0276200
rosa_samantha	Rh4AG331300 Rh4BG339200 Rh4CG354300 Rh4DG334300
rosa_wichuraiana	Rw4G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	566, 898
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	2 cut(s)	256, 717
AccII	CGCG	1 cut(s)	856
AciI	CCGC	3 cut(s)	606, 840, 1020
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	424
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	5 cut(s)	86, 131, 258, 281, 599
AfiI	CCNNNNNNNGG	2 cut(s)	205, 511
AflIII	ACRYGT	2 cut(s)	126, 854
AgsI	TTSAA	1 cut(s)	699
AluBI	AGCT	2 cut(s)	107, 169
AluI	AGCT	2 cut(s)	107, 169
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	752, 845
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	3 cut(s)	364, 424, 428
ApeKI	GCWGC	5 cut(s)	107, 148, 677, 965, 1000
Asp718I	GGTACC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	567, 821
AsuC2I	CCSGG	2 cut(s)	38, 62
AvaII	GGWCC	2 cut(s)	567, 821
BaeI	ACNNNNGTAYC	2 cut(s)	248, 281
BanI	GGYRCC	2 cut(s)	256, 717
BanII	GRGCYC	2 cut(s)	171, 922
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	5 cut(s)	94, 135, 664, 977, 987
BccI	CCATC	3 cut(s)	214, 458, 810
BceAI	ACGGC	1 cut(s)	362
BcgI	CGANNNNNNTGC	2 cut(s)	944, 978
BciVI	GTATCC	1 cut(s)	869
BclI	TGATCA	2 cut(s)	481, 808
BcnI	CCSGG	2 cut(s)	38, 62
BcoDI	GTCTC	2 cut(s)	752, 845
BfaI	CTAG	1 cut(s)	17
BfuAI	ACCTGC	2 cut(s)	566, 898
BfuI	GTATCC	1 cut(s)	869
BisI	GCNGC	5 cut(s)	108, 149, 678, 966, 1001
BlsI	GCNGC	5 cut(s)	109, 150, 679, 967, 1002
Bme1390I	CCNGG	2 cut(s)	38, 62
Bme18I	GGWCC	2 cut(s)	567, 821
BmgT120I	GGNCC	2 cut(s)	567, 821
BmiI	GGNNCC	3 cut(s)	258, 719, 822
BmrFI	CCNGG	2 cut(s)	38, 62
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	3 cut(s)	394, 689, 946
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	762
BpuMI	CCSGG	2 cut(s)	38, 62
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	4 cut(s)	37, 60, 100, 505
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 511
Bse118I	RCCGGY	2 cut(s)	426, 780
Bse1I	ACTGG	2 cut(s)	78, 394
BseDI	CCNNGG	4 cut(s)	37, 60, 100, 505
BseGI	GGATG	2 cut(s)	409, 821
BseLI	CCNNNNNNNGG	2 cut(s)	205, 511
BseMII	CTCAG	1 cut(s)	935
BseNI	ACTGG	2 cut(s)	78, 394
BseRI	GAGGAG	1 cut(s)	863
BseXI	GCAGC	5 cut(s)	94, 135, 664, 977, 987
BsgI	GTGCAG	3 cut(s)	93, 332, 926
Bsh1236I	CGCG	1 cut(s)	856
BshFI	GGCC	3 cut(s)	366, 426, 430
BshNI	GGYRCC	2 cut(s)	256, 717
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	4 cut(s)	37, 62, 427, 781
BslFI	GGGAC	2 cut(s)	90, 257
BslI	CCNNNNNNNGG	2 cut(s)	205, 511
BsmAI	GTCTC	2 cut(s)	752, 845
BsmBI	CGTCTC	1 cut(s)	845
BsmFI	GGGAC	2 cut(s)	90, 257
BsmI	GAATGC	2 cut(s)	357, 968
BsnI	GGCC	3 cut(s)	366, 426, 430
Bso31I	GGTCTC	1 cut(s)	752
Bsp1286I	GDGCHC	2 cut(s)	171, 922
Bsp143I	GATC	6 cut(s)	20, 66, 343, 481, 625, 808
Bsp19I	CCATGG	2 cut(s)	100, 505
BspACI	CCGC	3 cut(s)	606, 840, 1020
BspANI	GGCC	3 cut(s)	366, 426, 430
BspCNI	CTCAG	1 cut(s)	934
BspFNI	CGCG	1 cut(s)	856
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	3 cut(s)	258, 719, 822
BspMI	ACCTGC	2 cut(s)	566, 898
BspPI	GGATC	1 cut(s)	28
BspT107I	GGYRCC	2 cut(s)	256, 717
BspTNI	GGTCTC	1 cut(s)	752
BsrFI	RCCGGY	2 cut(s)	426, 780
BsrI	ACTGG	2 cut(s)	78, 394
BssAI	RCCGGY	2 cut(s)	426, 780
BssECI	CCNNGG	4 cut(s)	37, 60, 100, 505
BssMI	GATC	6 cut(s)	20, 66, 343, 481, 625, 808
BssT1I	CCWWGG	2 cut(s)	100, 505
Bst4CI	ACNGT	3 cut(s)	200, 256, 518
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	3 cut(s)	230, 751, 921
BstDSI	CCRYGG	2 cut(s)	100, 505
BstF5I	GGATG	2 cut(s)	409, 821
BstFNI	CGCG	1 cut(s)	856
BstKTI	GATC	6 cut(s)	23, 69, 346, 484, 628, 811
BstMAI	GTCTC	2 cut(s)	752, 845
BstMBI	GATC	6 cut(s)	20, 66, 343, 481, 625, 808
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 145, 363, 724, 965
BstNSI	RCATGY	2 cut(s)	130, 641
BstSCI	CCNGG	2 cut(s)	36, 60
BstUI	CGCG	1 cut(s)	856
BstV1I	GCAGC	5 cut(s)	94, 135, 664, 977, 987
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	869
BsuRI	GGCC	3 cut(s)	366, 426, 430
BtgI	CCRYGG	2 cut(s)	100, 505
BtgZI	GCGATG	1 cut(s)	969
BtsCI	GGATG	2 cut(s)	409, 821
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	165, 523
BveI	ACCTGC	2 cut(s)	566, 898
Cac8I	GCNNGC	1 cut(s)	428
CciI	TCATGA	1 cut(s)	805
Cfr10I	RCCGGY	2 cut(s)	426, 780
Cfr13I	GGNCC	2 cut(s)	567, 821
CseI	GACGC	2 cut(s)	314, 862
Csp6I	GTAC	5 cut(s)	85, 130, 257, 280, 598
CviAII	CATG	9 cut(s)	101, 127, 241, 341, 506, 564, 638, 806, 1004
CviQI	GTAC	5 cut(s)	85, 130, 257, 280, 598
DdeI	CTNAG	3 cut(s)	230, 751, 921
DpnI	GATC	6 cut(s)	22, 68, 345, 483, 627, 810
DpnII	GATC	6 cut(s)	20, 66, 343, 481, 625, 808
DraIII	CACNNNGTG	1 cut(s)	902
EaeI	YGGCCR	1 cut(s)	424
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	100, 505
Eco24I	GRGCYC	2 cut(s)	171, 922
Eco31I	GGTCTC	1 cut(s)	752
Eco32I	GATATC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	567, 821
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRV	GATATC	1 cut(s)	236
EcoT14I	CCWWGG	2 cut(s)	100, 505
EcoT22I	ATGCAT	1 cut(s)	961
EcoT38I	GRGCYC	2 cut(s)	171, 922
ErhI	CCWWGG	2 cut(s)	100, 505
Esp3I	CGTCTC	1 cut(s)	845
FaeI	CATG	9 cut(s)	104, 130, 244, 344, 509, 567, 641, 809, 1007
FaqI	GGGAC	2 cut(s)	90, 257
FatI	CATG	9 cut(s)	100, 126, 240, 340, 505, 563, 637, 805, 1003
FauI	CCCGC	1 cut(s)	599
FauNDI	CATATG	1 cut(s)	961
FbaI	TGATCA	2 cut(s)	481, 808
Fnu4HI	GCNGC	5 cut(s)	108, 149, 678, 966, 1001
FokI	GGATG	2 cut(s)	416, 828
FriOI	GRGCYC	2 cut(s)	171, 922
FseI	GGCCGGCC	1 cut(s)	430
Fsp4HI	GCNGC	5 cut(s)	108, 149, 678, 966, 1001
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	5 cut(s)	108, 149, 678, 966, 1001
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	3 cut(s)	366, 426, 430
HapII	CCGG	4 cut(s)	37, 62, 427, 781
HgaI	GACGC	2 cut(s)	314, 862
Hin1II	CATG	9 cut(s)	104, 130, 244, 344, 509, 567, 641, 809, 1007
HinfI	GANTC	2 cut(s)	13, 1013
HpaII	CCGG	4 cut(s)	37, 62, 427, 781
Hpy166II	GTNNAC	2 cut(s)	87, 931
Hpy188I	TCNGA	2 cut(s)	330, 924
Hpy188III	TCNNGA	4 cut(s)	461, 699, 806, 975
Hpy8I	GTNNAC	2 cut(s)	87, 931
Hpy99I	CGWCG	1 cut(s)	330
HpyAV	CCTTC	4 cut(s)	75, 205, 524, 804
HpyCH4III	ACNGT	3 cut(s)	200, 256, 518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 145, 363, 724, 965
HpyF3I	CTNAG	3 cut(s)	230, 751, 921
Hsp92II	CATG	9 cut(s)	104, 130, 244, 344, 509, 567, 641, 809, 1007
KpnI	GGTACC	1 cut(s)	260
KroI	GCCGGC	1 cut(s)	426
KroNI	GCCGGC	1 cut(s)	428
Ksp22I	TGATCA	2 cut(s)	481, 808
Kzo9I	GATC	6 cut(s)	20, 66, 343, 481, 625, 808
LmnI	GCTCC	2 cut(s)	104, 156
Lsp1109I	GCAGC	5 cut(s)	94, 135, 664, 977, 987
LweI	GCATC	3 cut(s)	394, 689, 946
MaeI	CTAG	1 cut(s)	17
MaeIII	GTNAC	4 cut(s)	518, 554, 776, 910
MalI	GATC	6 cut(s)	22, 68, 345, 483, 627, 810
MboI	GATC	6 cut(s)	20, 66, 343, 481, 625, 808
MboII	GAAGA	4 cut(s)	66, 236, 622, 781
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	2 cut(s)	171, 922
MluCI	AATT	1 cut(s)	785
MluI	ACGCGT	1 cut(s)	854
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	7 cut(s)	3, 320, 377, 441, 678, 737, 841
Mph1103I	ATGCAT	1 cut(s)	961
MroNI	GCCGGC	1 cut(s)	426
MseI	TTAA	3 cut(s)	30, 93, 615
MslI	CAYNNNNRTG	1 cut(s)	873
MspI	CCGG	4 cut(s)	37, 62, 427, 781
MspR9I	CCNGG	2 cut(s)	38, 62
Mva1269I	GAATGC	2 cut(s)	357, 968
MvnI	CGCG	1 cut(s)	856
MwoI	GCNNNNNNNGC	5 cut(s)	113, 145, 363, 724, 965
NaeI	GCCGGC	1 cut(s)	428
NciI	CCSGG	2 cut(s)	38, 62
NcoI	CCATGG	2 cut(s)	100, 505
NdeI	CATATG	1 cut(s)	961
NdeII	GATC	6 cut(s)	20, 66, 343, 481, 625, 808
NgoMIV	GCCGGC	1 cut(s)	426
NlaIII	CATG	9 cut(s)	104, 130, 244, 344, 509, 567, 641, 809, 1007
NlaIV	GGNNCC	3 cut(s)	258, 719, 822
NmuCI	GTSAC	2 cut(s)	518, 554
NsiI	ATGCAT	1 cut(s)	961
NspI	RCATGY	2 cut(s)	130, 641
PagI	TCATGA	1 cut(s)	805
PciI	ACATGT	1 cut(s)	126
PctI	GAATGC	2 cut(s)	357, 968
PdiI	GCCGGC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	13, 1013
PkrI	GCNGC	5 cut(s)	109, 150, 679, 967, 1002
PpuMI	RGGWCCY	1 cut(s)	821
PscI	ACATGT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	821
PspN4I	GGNNCC	3 cut(s)	258, 719, 822
PspPI	GGNCC	2 cut(s)	567, 821
PspPPI	RGGWCCY	1 cut(s)	821
PsrI	GAACNNNNNNTAC	4 cut(s)	113, 145, 927, 959
PsuI	RGATCY	1 cut(s)	20
RigI	GGCCGGCC	1 cut(s)	430
RsaI	GTAC	5 cut(s)	86, 131, 258, 281, 599
RsaNI	GTAC	5 cut(s)	85, 130, 257, 280, 598
RseI	CAYNNNNRTG	1 cut(s)	873
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	30, 93, 615
SatI	GCNGC	5 cut(s)	108, 149, 678, 966, 1001
Sau3AI	GATC	6 cut(s)	20, 66, 343, 481, 625, 808
Sau96I	GGNCC	2 cut(s)	567, 821
ScrFI	CCNGG	2 cut(s)	38, 62
SduI	GDGCHC	2 cut(s)	171, 922
SetI	ASST	8 cut(s)	86, 109, 171, 231, 262, 580, 748, 912
SfaNI	GCATC	3 cut(s)	394, 689, 946
SinI	GGWCC	2 cut(s)	567, 821
SmiMI	CAYNNNNRTG	1 cut(s)	873
Sse9I	AATT	1 cut(s)	785
SsiI	CCGC	3 cut(s)	606, 840, 1020
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	36, 60
StyI	CCWWGG	2 cut(s)	100, 505
TaaI	ACNGT	3 cut(s)	200, 256, 518
TaqI	TCGA	2 cut(s)	69, 433
TasI	AATT	1 cut(s)	785
TatI	WGTACW	2 cut(s)	279, 597
TfiI	GAWTC	2 cut(s)	13, 1013
Tru1I	TTAA	3 cut(s)	30, 93, 615
Tru9I	TTAA	3 cut(s)	30, 93, 615
TscAI	CASTG	2 cut(s)	165, 523
TseFI	GTSAC	2 cut(s)	518, 554
TseI	GCWGC	5 cut(s)	107, 148, 677, 965, 1000
Tsp45I	GTSAC	2 cut(s)	518, 554
TspDTI	ATGAA	5 cut(s)	169, 257, 552, 759, 1020
TspGWI	ACGGA	2 cut(s)	180, 416
TspRI	CASTG	2 cut(s)	165, 523
VpaK11BI	GGWCC	2 cut(s)	567, 821
XceI	RCATGY	2 cut(s)	130, 641
XcmI	CCANNNNNNNNNTGG	2 cut(s)	359, 444
XspI	CTAG	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.