RchiOBHm_Chr4g0434341

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004265
Physical Location & Seq
Reverse (-)
58153206 .. 58155581
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40280

Sequence Viewer

Length: 1029 bp
ATGGGTTGGCGGAGTCTTGGATCCCTTTTTCCTTATTTCCGCAATCTCTTTAACTTCCAGCAGGTGCAGGGTGATCAACCGGGCACGTACACCATCAAGTCTCATGGAGCCGCGGTTGCCAAGAACCACAAGCATGACTGGCTCATACTCGTGCTTCTTGGTTTGATCGAGATAGTCTTGTATATCATTCAACCTTTCCACCGTTTTGTGGGGAAGGATATGATGACTGACCTTAAGTACCCCATGAAAGCAAACACTGTCCCTGTTTGGGCTGTTCCTATGTATGCAGTCTTGGTTCCTATTGCCATTTTTCTTTTCTTCTATGCGCGTAGGAGAGATGTGTATGATCTTCACCACAGCATTCTTGGCCTGTTATTTGCTGTGTTGGTTACTGCTGTCATTACTGATTCAATAAAAAATGGAGTTGGGCGTCCCAGACCAGATTTCTTTTGGCGTTGCTTTCCTGATGGAATCGATAATTATGATAAGTGGGGAGATGTGGTGTGCCATGGTAAGGCCAAGGACATAAAGGAAGGACATAAGAGTTTCCCGAGTGGCCATACTTCATGGTCCTTTGCAGGCTTAGGCTTCCTTGCCTTGTACTTGAGTGGAAAGATTAAAGTTTTTGATCGAAAAGGGCATGTTGCGAAACTATGCATTGTCTCCCTTCCTCTACTGGTTGCATCTCTCGTTGCAGTGTCCAGAGTATCTGACTATTGGCACCATTGGCAAGATGTGTTTGCTGGAGGTCTTTTAGGATTTGTTGTGGCTGCATTTTGCTACCGGCAGTTCTTCCCTGCTCCTTATCATGATCAAGGATGGGGTCCTTATGCATATTTCCAAGCATTGGAGGAGACGCGTAGCAATTCAAGCTCGGCGTCCACTGCAAATGCACTCAGTGTGCAGGTCATGGGGGTTCAGAACGTTACTCAACCTGTTCCTGCACAAAATGGTGTTGCATTTTCATCATATGCTTCAAATCAATATACAAGCCTTAAGCTAGATGATATGGAATCTGGGAGGCGGTGA

Protein Analysis

342

Amino Acids

38.41

Weight (kDa)

9.2

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 122 - 265 5.2e-32 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 52
Acc36I ACCTGC 2 cut(s) 52, 895
AccB1I GGYRCC 1 cut(s) 720
AccB7I CCANNNNNTGG 1 cut(s) 847
AccII CGCG 3 cut(s) 113, 328, 859
AciI CCGC 5 cut(s) 10, 40, 111, 113, 1024
AclI AACGTT 1 cut(s) 924
AclWI GGATC 2 cut(s) 15, 28
AcoI YGGCCR 1 cut(s) 556
AcyI GRCGYC 2 cut(s) 430, 878
AdeI CACNNNGTG 1 cut(s) 899
AfaI GTAC 3 cut(s) 89, 239, 602
AfiI CCNNNNNNNGG 4 cut(s) 208, 268, 514, 847
AflII CTTAAG 2 cut(s) 233, 995
AflIII ACRYGT 1 cut(s) 857
AgsI TTSAA 4 cut(s) 191, 411, 870, 978
AluBI AGCT 2 cut(s) 873, 1000
AluI AGCT 2 cut(s) 873, 1000
Alw26I GTCTC 3 cut(s) 105, 667, 848
AlwI GGATC 2 cut(s) 15, 28
Ama87I CYCGRG 1 cut(s) 550
AoxI GGCC 3 cut(s) 367, 516, 556
ApeKI GCWGC 1 cut(s) 770
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 2 cut(s) 570, 824
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 83, 344
AvaI CYCGRG 1 cut(s) 550
AvaII GGWCC 2 cut(s) 570, 824
BaeGI GKGCMC 1 cut(s) 86
BalI TGGCCA 1 cut(s) 558
BamHI GGATCC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 720
BauI CACGAG 1 cut(s) 149
BbvI GCAGC 1 cut(s) 757
BccI CCATC 3 cut(s) 101, 461, 813
BclI TGATCA 2 cut(s) 73, 811
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 3 cut(s) 105, 667, 848
BfaI CTAG 1 cut(s) 1001
BfrI CTTAAG 2 cut(s) 233, 995
BfuAI ACCTGC 2 cut(s) 52, 895
BisI GCNGC 2 cut(s) 111, 771
BlsI GCNGC 2 cut(s) 112, 772
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 2 cut(s) 570, 824
BmeT110I CYCGRG 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 570, 824
BmiI GGNNCC 5 cut(s) 22, 109, 297, 722, 825
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 692
BpmI CTGGAG 1 cut(s) 765
Bpu10I CCTNAGC 1 cut(s) 583
BpuEI CTTGAG 1 cut(s) 625
BpuMI CCSGG 1 cut(s) 81
Bsa29I ATCGAT 1 cut(s) 474
BsaAI YACGTR 1 cut(s) 87
BsaHI GRCGYC 2 cut(s) 430, 878
BsaJI CCNNGG 3 cut(s) 111, 508, 519
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 486, 516
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 268, 514, 847
Bse118I RCCGGY 1 cut(s) 783
Bse1I ACTGG 2 cut(s) 143, 681
BseCI ATCGAT 1 cut(s) 474
BseDI CCNNGG 3 cut(s) 111, 508, 519
BseGI GGATG 1 cut(s) 824
BseLI CCNNNNNNNGG 4 cut(s) 208, 268, 514, 847
BseMII CTCAG 1 cut(s) 910
BseNI ACTGG 2 cut(s) 143, 681
BseRI GAGGAG 1 cut(s) 866
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 1 cut(s) 757
BsgI GTGCAG 3 cut(s) 86, 923, 927
Bsh1236I CGCG 3 cut(s) 113, 328, 859
BshFI GGCC 3 cut(s) 369, 518, 558
BshNI GGYRCC 1 cut(s) 720
BshVI ATCGAT 1 cut(s) 474
BsiHKCI CYCGRG 1 cut(s) 550
BsiSI CCGG 2 cut(s) 80, 784
BslFI GGGAC 2 cut(s) 245, 417
BslI CCNNNNNNNGG 4 cut(s) 208, 268, 514, 847
BsmAI GTCTC 3 cut(s) 105, 667, 848
BsmBI CGTCTC 1 cut(s) 848
BsmFI GGGAC 2 cut(s) 245, 417
BsmI GAATGC 1 cut(s) 360
BsnI GGCC 3 cut(s) 369, 518, 558
BsoBI CYCGRG 1 cut(s) 550
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 6 cut(s) 20, 73, 165, 346, 628, 811
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 5 cut(s) 10, 40, 111, 113, 1024
BspANI GGCC 3 cut(s) 369, 518, 558
BspCNI CTCAG 1 cut(s) 909
BspDI ATCGAT 1 cut(s) 474
BspFNI CGCG 3 cut(s) 113, 328, 859
BspHI TCATGA 1 cut(s) 808
BspLI GGNNCC 5 cut(s) 22, 109, 297, 722, 825
BspMI ACCTGC 2 cut(s) 52, 895
BspPI GGATC 2 cut(s) 15, 28
BspT107I GGYRCC 1 cut(s) 720
BspTI CTTAAG 2 cut(s) 233, 995
BsrFI RCCGGY 1 cut(s) 783
BsrI ACTGG 2 cut(s) 143, 681
BssAI RCCGGY 1 cut(s) 783
BssECI CCNNGG 3 cut(s) 111, 508, 519
BssMI GATC 6 cut(s) 20, 73, 165, 346, 628, 811
BssNI GRCGYC 2 cut(s) 430, 878
BssSI CACGAG 1 cut(s) 149
BssT1I CCWWGG 2 cut(s) 508, 519
Bst2BI CACGAG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 203, 259
BstACI GRCGYC 2 cut(s) 430, 878
BstAFI CTTAAG 2 cut(s) 233, 995
BstBAI YACGTR 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 2 cut(s) 583, 896
BstDSI CCRYGG 2 cut(s) 111, 508
BstF5I GGATG 1 cut(s) 824
BstFNI CGCG 3 cut(s) 113, 328, 859
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 6 cut(s) 23, 76, 168, 349, 631, 814
BstMAI GTCTC 3 cut(s) 105, 667, 848
BstMBI GATC 6 cut(s) 20, 73, 165, 346, 628, 811
BstMWI GCNNNNNNNGC 6 cut(s) 116, 139, 366, 727, 870, 884
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 86
BstUI CGCG 3 cut(s) 113, 328, 859
BstV1I GCAGC 1 cut(s) 757
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
Bsu15I ATCGAT 1 cut(s) 474
BsuRI GGCC 3 cut(s) 369, 518, 558
BsuTUI ATCGAT 1 cut(s) 474
BtgI CCRYGG 2 cut(s) 111, 508
BtsCI GGATG 1 cut(s) 824
BtsI GCAGTG 2 cut(s) 702, 882
BtsIMutI CAGTG 4 cut(s) 255, 702, 882, 904
BveI ACCTGC 2 cut(s) 52, 895
Cac8I GCNNGC 1 cut(s) 580
CciI TCATGA 1 cut(s) 808
CfoI GCGC 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 783
Cfr13I GGNCC 2 cut(s) 570, 824
Cfr42I CCGCGG 1 cut(s) 114
ClaI ATCGAT 1 cut(s) 474
CseI GACGC 3 cut(s) 419, 865, 867
Csp6I GTAC 3 cut(s) 88, 238, 601
CviAII CATG 8 cut(s) 104, 134, 244, 509, 567, 641, 809, 910
CviQI GTAC 3 cut(s) 88, 238, 601
DdeI CTNAG 2 cut(s) 583, 896
DpnI GATC 6 cut(s) 22, 75, 167, 348, 630, 813
DpnII GATC 6 cut(s) 20, 73, 165, 346, 628, 811
DraIII CACNNNGTG 1 cut(s) 899
EaeI YGGCCR 1 cut(s) 556
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 508, 519
Eco47I GGWCC 2 cut(s) 570, 824
Eco88I CYCGRG 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 824
EcoT14I CCWWGG 2 cut(s) 508, 519
EcoT22I ATGCAT 2 cut(s) 659, 835
ErhI CCWWGG 2 cut(s) 508, 519
Esp3I CGTCTC 1 cut(s) 848
FaeI CATG 8 cut(s) 107, 137, 247, 512, 570, 644, 812, 913
FaqI GGGAC 2 cut(s) 245, 417
FatI CATG 8 cut(s) 103, 133, 243, 508, 566, 640, 808, 909
FauNDI CATATG 1 cut(s) 970
FbaI TGATCA 2 cut(s) 73, 811
Fnu4HI GCNGC 2 cut(s) 111, 771
FokI GGATG 1 cut(s) 831
Fsp4HI GCNGC 2 cut(s) 111, 771
FspBI CTAG 1 cut(s) 1001
GlaI GCGC 1 cut(s) 327
GluI GCNGC 2 cut(s) 111, 771
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 3 cut(s) 369, 518, 558
HapII CCGG 2 cut(s) 80, 784
HgaI GACGC 3 cut(s) 419, 865, 867
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 2 cut(s) 430, 878
Hin1II CATG 8 cut(s) 107, 137, 247, 512, 570, 644, 812, 913
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 4 cut(s) 13, 407, 471, 1013
HpaII CCGG 2 cut(s) 80, 784
HphI GGTGA 2 cut(s) 83, 344
Hpy166II GTNNAC 2 cut(s) 90, 882
Hpy188I TCNGA 2 cut(s) 712, 921
Hpy188III TCNNGA 5 cut(s) 169, 464, 550, 702, 809
Hpy8I GTNNAC 2 cut(s) 90, 882
HpyAV CCTTC 3 cut(s) 208, 527, 677
HpyCH4III ACNGT 2 cut(s) 203, 259
HpyCH4IV ACGT 2 cut(s) 86, 924
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 139, 366, 727, 870, 884
HpyF3I CTNAG 2 cut(s) 583, 896
HpySE526I ACGT 2 cut(s) 86, 924
Hsp92I GRCGYC 2 cut(s) 430, 878
Hsp92II CATG 8 cut(s) 107, 137, 247, 512, 570, 644, 812, 913
HspAI GCGC 1 cut(s) 326
Ksp22I TGATCA 2 cut(s) 73, 811
KspI CCGCGG 1 cut(s) 114
Kzo9I GATC 6 cut(s) 20, 73, 165, 346, 628, 811
LmnI GCTCC 2 cut(s) 107, 805
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 1 cut(s) 692
MaeI CTAG 1 cut(s) 1001
MaeII ACGT 2 cut(s) 86, 924
MaeIII GTNAC 2 cut(s) 388, 925
MalI GATC 6 cut(s) 22, 75, 167, 348, 630, 813
MboI GATC 6 cut(s) 20, 73, 165, 346, 628, 811
MboII GAAGA 3 cut(s) 310, 341, 784
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 2 cut(s) 478, 865
MluI ACGCGT 1 cut(s) 857
MluNI TGGCCA 1 cut(s) 558
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 4 cut(s) 681, 740, 844, 1014
Mox20I TGGCCA 1 cut(s) 558
Mph1103I ATGCAT 2 cut(s) 659, 835
MscI TGGCCA 1 cut(s) 558
MseI TTAA 4 cut(s) 51, 234, 618, 996
MslI CAYNNNNRTG 2 cut(s) 132, 149
Msp20I TGGCCA 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 113
MspCI CTTAAG 2 cut(s) 233, 995
MspI CCGG 2 cut(s) 80, 784
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 360
MvnI CGCG 3 cut(s) 113, 328, 859
MwoI GCNNNNNNNGC 6 cut(s) 116, 139, 366, 727, 870, 884
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 508
NdeI CATATG 1 cut(s) 970
NdeII GATC 6 cut(s) 20, 73, 165, 346, 628, 811
NlaIII CATG 8 cut(s) 107, 137, 247, 512, 570, 644, 812, 913
NlaIV GGNNCC 5 cut(s) 22, 109, 297, 722, 825
NmeAIII GCCGAG 1 cut(s) 854
NsiI ATGCAT 2 cut(s) 659, 835
NspI RCATGY 1 cut(s) 644
PagI TCATGA 1 cut(s) 808
PaqCI CACCTGC 1 cut(s) 52
PctI GAATGC 1 cut(s) 360
PfeI GAWTC 3 cut(s) 407, 471, 1013
PflMI CCANNNNNTGG 1 cut(s) 847
PkrI GCNGC 2 cut(s) 112, 772
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
Ppu21I YACGTR 1 cut(s) 87
PpuMI RGGWCCY 1 cut(s) 824
Psp1406I AACGTT 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 824
PspN4I GGNNCC 5 cut(s) 22, 109, 297, 722, 825
PspPI GGNCC 2 cut(s) 570, 824
PspPPI RGGWCCY 1 cut(s) 824
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 3 cut(s) 89, 239, 602
RsaNI GTAC 3 cut(s) 88, 238, 601
RseI CAYNNNNRTG 2 cut(s) 132, 149
SacII CCGCGG 1 cut(s) 114
SaqAI TTAA 4 cut(s) 51, 234, 618, 996
SatI GCNGC 2 cut(s) 111, 771
Sau3AI GATC 6 cut(s) 20, 73, 165, 346, 628, 811
Sau96I GGNCC 2 cut(s) 570, 824
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 86
SfaNI GCATC 1 cut(s) 692
Sfr303I CCGCGG 1 cut(s) 114
SgrBI CCGCGG 1 cut(s) 114
SinI GGWCC 2 cut(s) 570, 824
SmiMI CAYNNNNRTG 2 cut(s) 132, 149
SmlI CTYRAG 3 cut(s) 233, 604, 995
SmoI CTYRAG 3 cut(s) 233, 604, 995
Sse9I AATT 2 cut(s) 478, 865
SsiI CCGC 5 cut(s) 10, 40, 111, 113, 1024
SspMI CTAG 1 cut(s) 1001
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 2 cut(s) 508, 519
TaaI ACNGT 2 cut(s) 203, 259
TaiI ACGT 2 cut(s) 89, 927
TaqI TCGA 3 cut(s) 168, 474, 631
TasI AATT 2 cut(s) 478, 865
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 3 cut(s) 407, 471, 1013
Tru1I TTAA 4 cut(s) 51, 234, 618, 996
Tru9I TTAA 4 cut(s) 51, 234, 618, 996
TscAI CASTG 4 cut(s) 262, 702, 889, 904
TseI GCWGC 1 cut(s) 770
TspDTI ATGAA 3 cut(s) 260, 555, 954
TspRI CASTG 4 cut(s) 262, 702, 889, 904
Van91I CCANNNNNTGG 1 cut(s) 847
Vha464I CTTAAG 2 cut(s) 233, 995
VpaK11BI GGWCC 2 cut(s) 570, 824
XceI RCATGY 1 cut(s) 644
XcmI CCANNNNNNNNNTGG 2 cut(s) 362, 447
XspI CTAG 1 cut(s) 1001
Zsp2I ATGCAT 2 cut(s) 659, 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.