Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004265

Physical Location & Seq

Genomic Coordinates Reverse (-)

44852578 .. 44854492

Gene Structure 1915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0276200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCCAAAGACAAAGGCAGTCACACATGCAGATCTTTCACCGAGCCGCCCACGCTCCGCTCTGGGCAGCAAAACAGGCCTTCTTCTCATTGTCTTGACCATTCTTTGTGGCCTCTTTTGCTTCATTCTATGCCTAATTGCTGAAGCCACTCGTTCTAGGGTTTCATGGCTGAGCAGCAGTAATGATGAAGATGGGAAGGGAGGAAAATACGAGTGTATATATAGTGGTAGTGGGAAAACACCTTTGTTAAGTGCAGCCAGTGCATTTTTGGGATTGGCAATTATCATGGTGGTGGAGCATGGATACATGTTGTATGCAATTACCAACTCCCCACCTTCAGTCTTGCTTACATGGGAGCCTCATGATTCAGCTTCTGCCAAGTCTTTGAAATGGCATGCCGCCATTTTCTTCGTCACAACTTGGATCTGTTTTGCTGTTGGGGAGATTTTGCTATTGATTGGCCTTAGCGTGGAGTCAGGCCATTTGAAAAACTGGGCTAGGCCAAAACCCAGTTGCCTTGTGATCAGAGAAGGTGTGTTCTCTGCAGCAGGAGTGTTTTCCTTGACTACTGTTTTTCTTGCTGCCGGATTATACTTGACGGCGTTGCGTGCAGAGAGAATTTCCCAAGACCAAGAAAATGTAAGGCGAGAGGTGCTCGAGGCCGCTGTACTCTATGCATCTCCACCAAGGTCACCTCATCTCACAACCATTCCAAGGGAGAACCCCATTTTCAGAGAAAGCCAGAATGAGCAGCCATCAGTACTTGTGCTTCAAGCAGCTTTTAGCAAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

264

Amino Acids

28.68

Weight (kDa)

8.74

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1218	PF06749	88 - 191	4.1e-19	Protein of unknown function (DUF1218)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180
fragaria_vesca	FvH4_4g26641
malus_domestica	MD13G1034800.v1.1 MD16G1036500.v1.1
prunus_persica	Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1
pyrus_communis	pycom13g03040 pycom16g03160
rosa_chinensis	RchiOBHm_Chr4g0434341
rosa_laevigata	RLG00000006681
rosa_multiflora	Rmu_sc0000459.1_g000028
rosa_roxburghii	Rroxscaffold_5G00375710
rosa_rugosa	Rorug04G0276000 Rorug04G0276100 Rorug04G0276100 Rorug04G0276200
rosa_samantha	Rh4AG331300 Rh4BG339200 Rh4CG354300 Rh4DG334300
rosa_wichuraiana	Rw4G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	4 cut(s)	46, 57, 399, 663
AclWI	GGATC	1 cut(s)	431
AcsI	RAATTY	1 cut(s)	618
AcuI	CTGAAG	2 cut(s)	162, 321
AfaI	GTAC	2 cut(s)	669, 762
AfiI	CCNNNNNNNGG	2 cut(s)	469, 714
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	388, 487, 773
AluBI	AGCT	2 cut(s)	371, 779
AluI	AGCT	2 cut(s)	371, 779
Alw21I	GWGCWC	1 cut(s)	657
AlwI	GGATC	1 cut(s)	431
AlwNI	CAGNNNCTG	1 cut(s)	374
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	6 cut(s)	76, 109, 460, 478, 500, 660
ApeKI	GCWGC	7 cut(s)	66, 174, 254, 545, 581, 751, 776
ApoI	RAATTY	1 cut(s)	618
AsuHPI	GGTGA	2 cut(s)	30, 684
AvaI	CYCGRG	1 cut(s)	656
BarI	GAAGNNNNNNTAC	2 cut(s)	753, 785
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	7 cut(s)	78, 186, 266, 557, 568, 763, 788
BccI	CCATC	2 cut(s)	185, 763
BceAI	ACGGC	1 cut(s)	615
BciVI	GTATCC	1 cut(s)	296
BclI	TGATCA	1 cut(s)	522
BfaI	CTAG	2 cut(s)	156, 498
BfmI	CTRYAG	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	296
BglII	AGATCT	1 cut(s)	31
BlpI	GCTNAGC	1 cut(s)	170
BmcAI	AGTACT	1 cut(s)	762
BmeT110I	CYCGRG	1 cut(s)	656
BmiI	GGNNCC	1 cut(s)	357
BmrI	ACTGGG	2 cut(s)	502, 504
BmsI	GCATC	1 cut(s)	686
BmuI	ACTGGG	2 cut(s)	502, 504
BplI	GAGNNNNNCTC	2 cut(s)	639, 671
Bpu10I	CCTNAGC	1 cut(s)	464
Bpu1102I	GCTNAGC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	686, 713
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 714
Bse1I	ACTGG	3 cut(s)	258, 497, 510
BseDI	CCNNGG	2 cut(s)	686, 713
BseLI	CCNNNNNNNGG	2 cut(s)	469, 714
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	3 cut(s)	258, 497, 510
BseXI	GCAGC	7 cut(s)	78, 186, 266, 557, 568, 763, 788
BsgI	GTGCAG	2 cut(s)	273, 630
BshFI	GGCC	6 cut(s)	78, 111, 462, 480, 502, 662
BsiHKAI	GWGCWC	1 cut(s)	657
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	1 cut(s)	585
BslI	CCNNNNNNNGG	2 cut(s)	469, 714
BsnI	GGCC	6 cut(s)	78, 111, 462, 480, 502, 662
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	657
Bsp143I	GATC	3 cut(s)	31, 423, 522
Bsp1720I	GCTNAGC	1 cut(s)	170
BspACI	CCGC	4 cut(s)	46, 57, 399, 663
BspANI	GGCC	6 cut(s)	78, 111, 462, 480, 502, 662
BspCNI	CTCAG	1 cut(s)	162
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	1 cut(s)	431
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	258, 497, 510
BssECI	CCNNGG	2 cut(s)	686, 713
BssMI	GATC	3 cut(s)	31, 423, 522
BssT1I	CCWWGG	2 cut(s)	686, 713
Bst4CI	ACNGT	1 cut(s)	571
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	396, 609
BstDEI	CTNAG	2 cut(s)	170, 464
BstEII	GGTNACC	1 cut(s)	690
BstKTI	GATC	3 cut(s)	34, 426, 525
BstMBI	GATC	3 cut(s)	31, 423, 522
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 75, 117, 260, 608, 652
BstNSI	RCATGY	3 cut(s)	29, 310, 398
BstPI	GGTNACC	1 cut(s)	690
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	7 cut(s)	78, 186, 266, 557, 568, 763, 788
BstX2I	RGATCY	2 cut(s)	31, 423
BstYI	RGATCY	2 cut(s)	31, 423
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	6 cut(s)	78, 111, 462, 480, 502, 662
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	396, 609
CaiI	CAGNNNCTG	1 cut(s)	374
CciI	TCATGA	1 cut(s)	361
Csp6I	GTAC	2 cut(s)	668, 761
CviAII	CATG	8 cut(s)	26, 165, 286, 299, 307, 351, 362, 395
CviQI	GTAC	2 cut(s)	668, 761
DdeI	CTNAG	2 cut(s)	170, 464
DpnI	GATC	3 cut(s)	33, 425, 524
DpnII	GATC	3 cut(s)	31, 423, 522
Eco130I	CCWWGG	2 cut(s)	686, 713
Eco147I	AGGCCT	1 cut(s)	78
Eco57I	CTGAAG	2 cut(s)	162, 321
Eco88I	CYCGRG	1 cut(s)	656
Eco91I	GGTNACC	1 cut(s)	690
EcoO65I	GGTNACC	1 cut(s)	690
EcoT14I	CCWWGG	2 cut(s)	686, 713
EcoT22I	ATGCAT	1 cut(s)	679
ErhI	CCWWGG	2 cut(s)	686, 713
FaeI	CATG	8 cut(s)	29, 168, 289, 302, 310, 354, 365, 398
FatI	CATG	8 cut(s)	25, 164, 285, 298, 306, 350, 361, 394
FbaI	TGATCA	1 cut(s)	522
FspBI	CTAG	2 cut(s)	156, 498
HaeIII	GGCC	6 cut(s)	78, 111, 462, 480, 502, 662
HapII	CCGG	1 cut(s)	585
Hin1II	CATG	8 cut(s)	29, 168, 289, 302, 310, 354, 365, 398
HinfI	GANTC	2 cut(s)	365, 473
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	2 cut(s)	30, 684
Hpy188I	TCNGA	2 cut(s)	527, 734
Hpy188III	TCNNGA	2 cut(s)	94, 362
HpyAV	CCTTC	4 cut(s)	89, 190, 345, 524
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	7 cut(s)	29, 254, 263, 317, 545, 611, 677
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 75, 117, 260, 608, 652
HpyF3I	CTNAG	2 cut(s)	170, 464
Hsp92II	CATG	8 cut(s)	29, 168, 289, 302, 310, 354, 365, 398
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	31, 423, 522
LmnI	GCTCC	3 cut(s)	59, 295, 355
LpnPI	CCDG	9 cut(s)	47, 60, 271, 462, 478, 523, 534, 598, 755
Lsp1109I	GCAGC	7 cut(s)	78, 186, 266, 557, 568, 763, 788
LweI	GCATC	1 cut(s)	686
MaeI	CTAG	2 cut(s)	156, 498
MaeIII	GTNAC	3 cut(s)	19, 412, 690
MalI	GATC	3 cut(s)	33, 425, 524
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	3 cut(s)	31, 423, 522
MboII	GAAGA	3 cut(s)	74, 200, 400
MflI	RGATCY	2 cut(s)	31, 423
MhlI	GDGCHC	1 cut(s)	657
MluCI	AATT	4 cut(s)	135, 279, 318, 618
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	6 cut(s)	122, 194, 369, 643, 652, 705
Mph1103I	ATGCAT	1 cut(s)	679
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	6 cut(s)	51, 75, 117, 260, 608, 652
NdeII	GATC	3 cut(s)	31, 423, 522
NlaIII	CATG	8 cut(s)	29, 168, 289, 302, 310, 354, 365, 398
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	3 cut(s)	19, 412, 690
NsiI	ATGCAT	1 cut(s)	679
NspI	RCATGY	3 cut(s)	29, 310, 398
PaeI	GCATGC	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	656
PagI	TCATGA	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	78
PciI	ACATGT	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PscI	ACATGT	1 cut(s)	306
PspEI	GGTNACC	1 cut(s)	690
PspN4I	GGNNCC	1 cut(s)	357
PspXI	VCTCGAGB	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	31, 423
RsaI	GTAC	2 cut(s)	669, 762
RsaNI	GTAC	2 cut(s)	668, 761
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	248
Sau3AI	GATC	3 cut(s)	31, 423, 522
ScaI	AGTACT	1 cut(s)	762
SchI	GAGTC	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	657
SetI	ASST	8 cut(s)	244, 337, 373, 535, 654, 692, 697, 781
SfaNI	GCATC	1 cut(s)	686
SfcI	CTRYAG	1 cut(s)	543
Sfr274I	CTCGAG	1 cut(s)	656
SlaI	CTCGAG	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SphI	GCATGC	1 cut(s)	398
Sse9I	AATT	4 cut(s)	135, 279, 318, 618
SseBI	AGGCCT	1 cut(s)	78
SsiI	CCGC	4 cut(s)	46, 57, 399, 663
SspMI	CTAG	2 cut(s)	156, 498
StuI	AGGCCT	1 cut(s)	78
StyI	CCWWGG	2 cut(s)	686, 713
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	1 cut(s)	657
TasI	AATT	4 cut(s)	135, 279, 318, 618
TatI	WGTACW	2 cut(s)	667, 760
TauI	GCSGC	3 cut(s)	48, 401, 665
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	3 cut(s)	19, 412, 690
TseI	GCWGC	7 cut(s)	66, 174, 254, 545, 581, 751, 776
Tsp45I	GTSAC	3 cut(s)	19, 412, 690
TspDTI	ATGAA	3 cut(s)	112, 153, 201
TspRI	CASTG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	618
XceI	RCATGY	3 cut(s)	29, 310, 398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XhoI	CTCGAG	1 cut(s)	656
XspI	CTAG	2 cut(s)	156, 498
ZrmI	AGTACT	1 cut(s)	762
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.