MD16G1036500.v1.1

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0004265
Physical Location & Seq
Reverse (-)
2625762 .. 2629277
3516 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1036500.v1.1.491

Sequence Viewer

Length: 1002 bp
ATGCTAAGAGGACTCTGTCAAAAAGGAAGAACTTCGGAGACGGAACTGGGAAGGTACACGATTAAATCCCATGGAGCTGCACTTGCAAAGAAGCACATGCACGATTGGCTTATACTGGTGCTCCTTGGAGTGATAGATCTCATTTTGTTCATCATTCATCCGTTCCACCGTTTCGTGGGGAAGGATATGATGGAAGACCTTAGATATCCCATGAAAGAGAGCACGGTGCCTCTGTGGGCTGTCCCTATGTACTCGGTTTTGTTGCCTATTGCGATTTTCCTCTTTTTCTATATGCGTCGGAAAGATGTCTATGATCTGCACCACAGCATTCTAGCAGGCCTCTTGTTCGCCGTGCTGATTACTGGTGTTATCACGGATGCGATTAAAAATGCGGTTGGCCGGCCTCGACCAGACTTCTTTTGGCGTTGCTTTCCTGATGGAAAAGATGTTTATGATACTTTTGGGGGTGTAATGTGCCATGGTAAGAGCGGTGACATAAAGGAAGGACATAAGAGTTTTCCAAGCGGTCACGCTTCATGGTCCTTTGCAGGTTTGGGATTTCTCTCGTTGTACTTGTGCGGGAAGATTAAAGCATTTGATCGCCAAGGGCACGTGGCGAAACTATGTATTGTCTTGCTTCCTCTACTTGCTGCATCTCTCGTTGGCATTTCAAGAGTAGATGACTATTGGCACCATTGGCAAGATGTGTTTGCTGGAGGCCTCTTAGGACTTGTTGTGGCTTCATTTTGTTACCGGCAATTCTTCCCTTCCCCTTATACCGATCAAGGATGGGGTCCTTATGCGTATTTCTCTGCATTGGAGGAAACACGTAGCCATTCAAATCCGGGTGTCAATCCTATGAACAATGCACTGAGTGTGCAGGTGATCGGGGCTCAGAATGTGAACGAACAACACATACAAATTGGCGATGCACTTGCAGCAATGTCTCACAACCGATACACAAGCATTAGTTTGCATGAAATGGAATCGGGCGAAAAGTAG

Protein Analysis

334

Amino Acids

37.35

Weight (kDa)

8.16

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 112 - 255 8.7e-32 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 871
Acc36I ACCTGC 2 cut(s) 539, 871
AccB1I GGYRCC 2 cut(s) 226, 690
AccBSI CCGCTC 1 cut(s) 489
AciI CCGC 4 cut(s) 392, 489, 525, 579
AcoI YGGCCR 1 cut(s) 397
AcvI CACGTG 1 cut(s) 613
AdeI CACNNNGTG 1 cut(s) 875
AfaI GTAC 3 cut(s) 56, 251, 572
AfiI CCNNNNNNNGG 1 cut(s) 175
AflIII ACRYGT 1 cut(s) 827
AgsI TTSAA 2 cut(s) 672, 840
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw21I GWGCWC 2 cut(s) 123, 224
Alw26I GTCTC 2 cut(s) 32, 951
AoxI GGCC 4 cut(s) 337, 397, 401, 718
ApeKI GCWGC 3 cut(s) 77, 650, 938
Asp700I GAANNNNTTC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 540, 794
AsuC2I CCSGG 1 cut(s) 846
AsuHPI GGTGA 2 cut(s) 503, 895
AvaII GGWCC 2 cut(s) 540, 794
BaeGI GKGCMC 1 cut(s) 612
BanI GGYRCC 2 cut(s) 226, 690
BanII GRGCYC 1 cut(s) 895
BbrPI CACGTG 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 2 cut(s) 123, 224
BbvI GCAGC 3 cut(s) 64, 637, 950
BccI CCATC 3 cut(s) 184, 431, 783
BceAI ACGGC 1 cut(s) 335
BcgI CGANNNNNNTGC 2 cut(s) 917, 951
BcnI CCSGG 1 cut(s) 846
BcoDI GTCTC 2 cut(s) 32, 951
BfaI CTAG 1 cut(s) 332
BfuAI ACCTGC 2 cut(s) 539, 871
BglII AGATCT 1 cut(s) 136
BisI GCNGC 3 cut(s) 78, 651, 939
BlsI GCNGC 3 cut(s) 79, 652, 940
Bme1390I CCNGG 1 cut(s) 846
Bme18I GGWCC 2 cut(s) 540, 794
BmgT120I GGNCC 2 cut(s) 540, 794
BmiI GGNNCC 3 cut(s) 228, 692, 795
BmrFI CCNGG 1 cut(s) 846
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 3 cut(s) 367, 662, 919
BmuI ACTGGG 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 735
BpuMI CCSGG 1 cut(s) 846
BsaAI YACGTR 2 cut(s) 613, 830
BsaJI CCNNGG 4 cut(s) 70, 124, 478, 604
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 2 cut(s) 399, 753
Bse1I ACTGG 3 cut(s) 51, 120, 367
Bse3DI GCAATG 1 cut(s) 948
BseDI CCNNGG 4 cut(s) 70, 124, 478, 604
BseGI GGATG 3 cut(s) 157, 382, 794
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 2 cut(s) 863, 908
BseNI ACTGG 3 cut(s) 51, 120, 367
BseSI GKGCMC 1 cut(s) 612
BseXI GCAGC 3 cut(s) 64, 637, 950
BsgI GTGCAG 3 cut(s) 63, 302, 899
BshFI GGCC 4 cut(s) 339, 399, 403, 720
BshNI GGYRCC 2 cut(s) 226, 690
BsiHKAI GWGCWC 2 cut(s) 123, 224
BsiSI CCGG 3 cut(s) 400, 754, 845
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 2 cut(s) 32, 951
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 4 cut(s) 339, 399, 403, 720
Bsp1286I GDGCHC 4 cut(s) 123, 224, 612, 895
Bsp143I GATC 5 cut(s) 136, 313, 598, 781, 885
Bsp19I CCATGG 2 cut(s) 70, 478
BspACI CCGC 4 cut(s) 392, 489, 525, 579
BspANI GGCC 4 cut(s) 339, 399, 403, 720
BspCNI CTCAG 2 cut(s) 864, 907
BspLI GGNNCC 3 cut(s) 228, 692, 795
BspMI ACCTGC 2 cut(s) 539, 871
BspT107I GGYRCC 2 cut(s) 226, 690
BsrBI CCGCTC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 948
BsrFI RCCGGY 2 cut(s) 399, 753
BsrI ACTGG 3 cut(s) 51, 120, 367
BssAI RCCGGY 2 cut(s) 399, 753
BssECI CCNNGG 4 cut(s) 70, 124, 478, 604
BssMI GATC 5 cut(s) 136, 313, 598, 781, 885
BssT1I CCWWGG 4 cut(s) 70, 124, 478, 604
Bst4CI ACNGT 2 cut(s) 170, 226
BstBAI YACGTR 2 cut(s) 613, 830
BstC8I GCNNGC 2 cut(s) 337, 401
BstDEI CTNAG 5 cut(s) 5, 200, 724, 872, 894
BstDSI CCRYGG 2 cut(s) 70, 478
BstF5I GGATG 3 cut(s) 157, 382, 794
BstKTI GATC 5 cut(s) 139, 316, 601, 784, 888
BstMAI GTCTC 2 cut(s) 32, 951
BstMBI GATC 5 cut(s) 136, 313, 598, 781, 885
BstMWI GCNNNNNNNGC 4 cut(s) 83, 106, 697, 938
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 844
BstSLI GKGCMC 1 cut(s) 612
BstV1I GCAGC 3 cut(s) 64, 637, 950
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 4 cut(s) 339, 399, 403, 720
BtgI CCRYGG 2 cut(s) 70, 478
BtgZI GCGATG 1 cut(s) 942
BtsCI GGATG 3 cut(s) 157, 382, 794
BtsIMutI CAGTG 1 cut(s) 869
BveI ACCTGC 2 cut(s) 539, 871
Cac8I GCNNGC 2 cut(s) 337, 401
Cfr10I RCCGGY 2 cut(s) 399, 753
Cfr13I GGNCC 2 cut(s) 540, 794
CseI GACGC 1 cut(s) 284
Csp6I GTAC 3 cut(s) 55, 250, 571
CviAII CATG 6 cut(s) 71, 97, 211, 479, 537, 977
CviQI GTAC 3 cut(s) 55, 250, 571
DdeI CTNAG 5 cut(s) 5, 200, 724, 872, 894
DpnI GATC 5 cut(s) 138, 315, 600, 783, 887
DpnII GATC 5 cut(s) 136, 313, 598, 781, 885
DraIII CACNNNGTG 1 cut(s) 875
EaeI YGGCCR 1 cut(s) 397
Eco130I CCWWGG 4 cut(s) 70, 124, 478, 604
Eco147I AGGCCT 2 cut(s) 339, 720
Eco24I GRGCYC 1 cut(s) 895
Eco32I GATATC 1 cut(s) 206
Eco47I GGWCC 2 cut(s) 540, 794
Eco72I CACGTG 1 cut(s) 613
EcoO109I RGGNCCY 1 cut(s) 794
EcoRV GATATC 1 cut(s) 206
EcoT14I CCWWGG 4 cut(s) 70, 124, 478, 604
EcoT38I GRGCYC 1 cut(s) 895
ErhI CCWWGG 4 cut(s) 70, 124, 478, 604
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 6 cut(s) 74, 100, 214, 482, 540, 980
FaqI GGGAC 1 cut(s) 227
FatI CATG 6 cut(s) 70, 96, 210, 478, 536, 976
FauI CCCGC 1 cut(s) 572
Fnu4HI GCNGC 3 cut(s) 78, 651, 939
FokI GGATG 3 cut(s) 144, 389, 801
FriOI GRGCYC 1 cut(s) 895
FseI GGCCGGCC 1 cut(s) 403
Fsp4HI GCNGC 3 cut(s) 78, 651, 939
FspBI CTAG 1 cut(s) 332
GluI GCNGC 3 cut(s) 78, 651, 939
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 4 cut(s) 339, 399, 403, 720
HapII CCGG 3 cut(s) 400, 754, 845
HgaI GACGC 1 cut(s) 284
Hin1II CATG 6 cut(s) 74, 100, 214, 482, 540, 980
HinfI GANTC 2 cut(s) 12, 986
HpaII CCGG 3 cut(s) 400, 754, 845
HphI GGTGA 2 cut(s) 503, 895
Hpy166II GTNNAC 2 cut(s) 57, 904
Hpy188I TCNGA 3 cut(s) 37, 300, 897
Hpy188III TCNNGA 2 cut(s) 434, 672
Hpy8I GTNNAC 2 cut(s) 57, 904
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 4 cut(s) 45, 175, 497, 777
HpyCH4III ACNGT 2 cut(s) 170, 226
HpyCH4IV ACGT 2 cut(s) 612, 829
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 106, 697, 938
HpyF3I CTNAG 5 cut(s) 5, 200, 724, 872, 894
HpySE526I ACGT 2 cut(s) 612, 829
Hsp92II CATG 6 cut(s) 74, 100, 214, 482, 540, 980
KroI GCCGGC 1 cut(s) 399
KroNI GCCGGC 1 cut(s) 401
Kzo9I GATC 5 cut(s) 136, 313, 598, 781, 885
LmnI GCTCC 2 cut(s) 74, 126
Lsp1109I GCAGC 3 cut(s) 64, 637, 950
LweI GCATC 3 cut(s) 367, 662, 919
MaeI CTAG 1 cut(s) 332
MaeII ACGT 2 cut(s) 612, 829
MaeIII GTNAC 3 cut(s) 491, 527, 749
MalI GATC 5 cut(s) 138, 315, 600, 783, 887
MbiI CCGCTC 1 cut(s) 489
MboI GATC 5 cut(s) 136, 313, 598, 781, 885
MboII GAAGA 4 cut(s) 39, 206, 595, 754
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 4 cut(s) 123, 224, 612, 895
MluCI AATT 2 cut(s) 758, 921
MlyI GAGTC 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 8 cut(s) 240, 290, 350, 414, 651, 710, 731, 814
MroNI GCCGGC 1 cut(s) 399
MroXI GAANNNNTTC 1 cut(s) 31
MseI TTAA 3 cut(s) 63, 384, 588
MspI CCGG 3 cut(s) 400, 754, 845
MspR9I CCNGG 1 cut(s) 846
Mva1269I GAATGC 1 cut(s) 327
MwoI GCNNNNNNNGC 4 cut(s) 83, 106, 697, 938
NaeI GCCGGC 1 cut(s) 401
NciI CCSGG 1 cut(s) 846
NcoI CCATGG 2 cut(s) 70, 478
NdeII GATC 5 cut(s) 136, 313, 598, 781, 885
NgoMIV GCCGGC 1 cut(s) 399
NlaIII CATG 6 cut(s) 74, 100, 214, 482, 540, 980
NlaIV GGNNCC 3 cut(s) 228, 692, 795
NmuCI GTSAC 2 cut(s) 491, 527
NspI RCATGY 1 cut(s) 100
PaqCI CACCTGC 1 cut(s) 871
PceI AGGCCT 2 cut(s) 339, 720
PctI GAATGC 1 cut(s) 327
PdiI GCCGGC 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 986
PflFI GACNNNGTC 1 cut(s) 15
PkrI GCNGC 3 cut(s) 79, 652, 940
PleI GAGTC 1 cut(s) 6
PmaCI CACGTG 1 cut(s) 613
PmlI CACGTG 1 cut(s) 613
PpsI GAGTC 1 cut(s) 6
Ppu21I YACGTR 2 cut(s) 613, 830
PpuMI RGGWCCY 1 cut(s) 794
Psp5II RGGWCCY 1 cut(s) 794
PspCI CACGTG 1 cut(s) 613
PspN4I GGNNCC 3 cut(s) 228, 692, 795
PspPI GGNCC 2 cut(s) 540, 794
PspPPI RGGWCCY 1 cut(s) 794
PsrI GAACNNNNNNTAC 2 cut(s) 900, 932
PsuI RGATCY 1 cut(s) 136
PsyI GACNNNGTC 1 cut(s) 15
RigI GGCCGGCC 1 cut(s) 403
RsaI GTAC 3 cut(s) 56, 251, 572
RsaNI GTAC 3 cut(s) 55, 250, 571
SaqAI TTAA 3 cut(s) 63, 384, 588
SatI GCNGC 3 cut(s) 78, 651, 939
Sau3AI GATC 5 cut(s) 136, 313, 598, 781, 885
Sau96I GGNCC 2 cut(s) 540, 794
SchI GAGTC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 846
SduI GDGCHC 4 cut(s) 123, 224, 612, 895
SetI ASST 7 cut(s) 56, 79, 201, 553, 615, 832, 885
SfaNI GCATC 3 cut(s) 367, 662, 919
SinI GGWCC 2 cut(s) 540, 794
Sse9I AATT 2 cut(s) 758, 921
SseBI AGGCCT 2 cut(s) 339, 720
SsiI CCGC 4 cut(s) 392, 489, 525, 579
SspMI CTAG 1 cut(s) 332
StuI AGGCCT 2 cut(s) 339, 720
StyD4I CCNGG 1 cut(s) 844
StyI CCWWGG 4 cut(s) 70, 124, 478, 604
TaaI ACNGT 2 cut(s) 170, 226
TaiI ACGT 2 cut(s) 615, 832
TaqI TCGA 1 cut(s) 406
TasI AATT 2 cut(s) 758, 921
TatI WGTACW 2 cut(s) 249, 570
TfiI GAWTC 1 cut(s) 986
Tru1I TTAA 3 cut(s) 63, 384, 588
Tru9I TTAA 3 cut(s) 63, 384, 588
TscAI CASTG 1 cut(s) 876
TseFI GTSAC 2 cut(s) 491, 527
TseI GCWGC 3 cut(s) 77, 650, 938
Tsp45I GTSAC 2 cut(s) 491, 527
TspDTI ATGAA 7 cut(s) 139, 146, 227, 525, 732, 875, 993
TspGWI ACGGA 3 cut(s) 56, 150, 389
TspRI CASTG 1 cut(s) 876
Tth111I GACNNNGTC 1 cut(s) 15
VpaK11BI GGWCC 2 cut(s) 540, 794
XceI RCATGY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 31
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.