Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004265

Physical Location & Seq

Genomic Coordinates Reverse (-)

56467533 .. 56470482

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGTTGGCGGAATCTTGGATCCCTTTTTTCTTATTTCCGCAGTCTCTTTAACTTCCAGCAGGTGCAGGGTGATCAACTGGGCACGTACACCATCAAGTCTCATGGAGCCGCGGTTGCCAAGAACCACAAGCATGACTGGCTCATACTCGTGCTTCTTGGTGTGATCGAGATAGTCTTGTATATCATTCAACCTTTCCACCGTTTTGTGGGGAAGGATATGATGACTGACCTCAAGTACCCCATGAAAGCAAACACTGTCCCTGTTTGGGCTGTTCCTGTATATGCAGTCTTGGTTCCTATTGCCATTTTTCTCTTCTTCTATGCGCGTAGGAGGGATGTTTATGATCTTCACCACAGCATTCTTGGCCTGTTATTTGCTGTGTTGGTTACTGCTGTCATTACTGATTCAATAAAAATGGAGTTGGGCGTCCAAGACCAGATTTCTTTTGGCGTTGCTTTCCTGATGGAATCGATGTATAATTATGATAAGTGGGGAGATGTGGTGTGCCATGGTAAGGCCAAGGACATAAAGGAAGGACATAAGAGTTTCCCGAGTGGCCATGCTTCATGGTCCTTTGCAGGCTTAGGCTTCCTTGCCTTGTACTTGAGTGGAAAGATTAAAGTTTTTGATCGAAAAGGGCATGTTGCGAAACTATGCATTGTCTCCTTCCTCTACTGGTTGCATCTCTCGTTGCAGTGTCCAGAGTATCTGACTATTGGCACCATTGGCAAGATGTGTTTGCTGGAGGATTTGTTGTGGCTGCATTTTGCTACCGGCAGATGGGGTCCTTATGCATATTTCCAAGCATTGGAGGAGACACGTAGCAATTCAAGCTCGGCGTCCACTGCAAATGCACTCAGTGTGCAGGTCATGGGGGTTCAGAACGTTAGTCAACCTGTACCTGCACAAAATGGTGTTGCATTTTCATCATATGCTTCAAATCAATATACAAGCCTTAAGCTAGATGAAATGGAATCTGGGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

330

Amino Acids

37.13

Weight (kDa)

8.87

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180
fragaria_vesca	FvH4_4g26641
malus_domestica	MD13G1034800.v1.1 MD16G1036500.v1.1
prunus_persica	Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1
pyrus_communis	pycom13g03040 pycom16g03160
rosa_chinensis	RchiOBHm_Chr4g0434341
rosa_laevigata	RLG00000006681
rosa_multiflora	Rmu_sc0000459.1_g000028
rosa_roxburghii	Rroxscaffold_5G00375710
rosa_rugosa	Rorug04G0276000 Rorug04G0276100 Rorug04G0276100 Rorug04G0276200
rosa_samantha	Rh4AG331300 Rh4BG339200 Rh4CG354300 Rh4DG334300
rosa_wichuraiana	Rw4G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	3 cut(s)	52, 859, 913
AccB1I	GGYRCC	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	811
AccII	CGCG	2 cut(s)	113, 328
AciI	CCGC	4 cut(s)	10, 40, 111, 113
AclI	AACGTT	1 cut(s)	888
AclWI	GGATC	2 cut(s)	15, 28
AcoI	YGGCCR	1 cut(s)	559
AcyI	GRCGYC	2 cut(s)	429, 842
AdeI	CACNNNGTG	1 cut(s)	863
AfaI	GTAC	4 cut(s)	89, 239, 605, 903
AfiI	CCNNNNNNNGG	5 cut(s)	208, 268, 517, 783, 811
AflII	CTTAAG	1 cut(s)	959
AflIII	ACRYGT	1 cut(s)	821
AgsI	TTSAA	4 cut(s)	191, 411, 834, 942
AluBI	AGCT	2 cut(s)	837, 964
AluI	AGCT	2 cut(s)	837, 964
Alw26I	GTCTC	4 cut(s)	50, 105, 670, 812
AlwI	GGATC	2 cut(s)	15, 28
Ama87I	CYCGRG	1 cut(s)	553
AoxI	GGCC	3 cut(s)	367, 519, 559
ApeKI	GCWGC	1 cut(s)	763
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	573, 788
AsuHPI	GGTGA	2 cut(s)	83, 344
AvaI	CYCGRG	1 cut(s)	553
AvaII	GGWCC	2 cut(s)	573, 788
BaeGI	GKGCMC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	561
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	722
BauI	CACGAG	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	750
BccI	CCATC	3 cut(s)	101, 460, 777
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	4 cut(s)	50, 105, 670, 812
BfaI	CTAG	1 cut(s)	965
BfrI	CTTAAG	1 cut(s)	959
BfuAI	ACCTGC	3 cut(s)	52, 859, 913
BisI	GCNGC	2 cut(s)	111, 764
BlsI	GCNGC	2 cut(s)	112, 765
Bme18I	GGWCC	2 cut(s)	573, 788
BmeT110I	CYCGRG	1 cut(s)	553
BmgT120I	GGNCC	2 cut(s)	573, 788
BmiI	GGNNCC	5 cut(s)	22, 109, 297, 724, 789
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	694
BmuI	ACTGGG	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	767
Bpu10I	CCTNAGC	1 cut(s)	586
BpuEI	CTTGAG	2 cut(s)	218, 628
Bsa29I	ATCGAT	1 cut(s)	473
BsaAI	YACGTR	2 cut(s)	87, 824
BsaHI	GRCGYC	2 cut(s)	429, 842
BsaJI	CCNNGG	3 cut(s)	111, 511, 522
BsaXI	ACNNNNNCTCC	6 cut(s)	99, 129, 489, 519, 740, 770
Bsc4I	CCNNNNNNNGG	5 cut(s)	208, 268, 517, 783, 811
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	3 cut(s)	84, 143, 683
BseCI	ATCGAT	1 cut(s)	473
BseDI	CCNNGG	3 cut(s)	111, 511, 522
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	5 cut(s)	208, 268, 517, 783, 811
BseMII	CTCAG	1 cut(s)	874
BseNI	ACTGG	3 cut(s)	84, 143, 683
BseRI	GAGGAG	1 cut(s)	830
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	750
BsgI	GTGCAG	3 cut(s)	86, 887, 891
Bsh1236I	CGCG	2 cut(s)	113, 328
BshFI	GGCC	3 cut(s)	369, 521, 561
BshNI	GGYRCC	1 cut(s)	722
BshVI	ATCGAT	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	777
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	5 cut(s)	208, 268, 517, 783, 811
BsmAI	GTCTC	4 cut(s)	50, 105, 670, 812
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	3 cut(s)	369, 521, 561
BsoBI	CYCGRG	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	5 cut(s)	20, 73, 165, 346, 631
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	4 cut(s)	10, 40, 111, 113
BspANI	GGCC	3 cut(s)	369, 521, 561
BspCNI	CTCAG	1 cut(s)	873
BspDI	ATCGAT	1 cut(s)	473
BspFNI	CGCG	2 cut(s)	113, 328
BspLI	GGNNCC	5 cut(s)	22, 109, 297, 724, 789
BspMI	ACCTGC	3 cut(s)	52, 859, 913
BspPI	GGATC	2 cut(s)	15, 28
BspT107I	GGYRCC	1 cut(s)	722
BspTI	CTTAAG	1 cut(s)	959
BsrFI	RCCGGY	1 cut(s)	776
BsrI	ACTGG	3 cut(s)	84, 143, 683
BssAI	RCCGGY	1 cut(s)	776
BssECI	CCNNGG	3 cut(s)	111, 511, 522
BssMI	GATC	5 cut(s)	20, 73, 165, 346, 631
BssNI	GRCGYC	2 cut(s)	429, 842
BssSI	CACGAG	1 cut(s)	149
BssT1I	CCWWGG	2 cut(s)	511, 522
Bst2BI	CACGAG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	203, 259
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	2 cut(s)	429, 842
BstAFI	CTTAAG	1 cut(s)	959
BstBAI	YACGTR	2 cut(s)	87, 824
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	2 cut(s)	586, 860
BstDSI	CCRYGG	2 cut(s)	111, 511
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	2 cut(s)	113, 328
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	5 cut(s)	23, 76, 168, 349, 634
BstMAI	GTCTC	4 cut(s)	50, 105, 670, 812
BstMBI	GATC	5 cut(s)	20, 73, 165, 346, 631
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 139, 366, 729, 834, 848
BstNSI	RCATGY	1 cut(s)	647
BstSLI	GKGCMC	1 cut(s)	86
BstUI	CGCG	2 cut(s)	113, 328
BstV1I	GCAGC	1 cut(s)	750
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	473
BsuRI	GGCC	3 cut(s)	369, 521, 561
BsuTUI	ATCGAT	1 cut(s)	473
BtgI	CCRYGG	2 cut(s)	111, 511
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	2 cut(s)	704, 846
BtsIMutI	CAGTG	4 cut(s)	255, 704, 846, 868
BveI	ACCTGC	3 cut(s)	52, 859, 913
Cac8I	GCNNGC	1 cut(s)	583
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	2 cut(s)	573, 788
Cfr42I	CCGCGG	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	473
CseI	GACGC	2 cut(s)	418, 831
Csp6I	GTAC	4 cut(s)	88, 238, 604, 902
CviAII	CATG	8 cut(s)	104, 134, 244, 512, 563, 570, 644, 874
CviQI	GTAC	4 cut(s)	88, 238, 604, 902
DdeI	CTNAG	2 cut(s)	586, 860
DpnI	GATC	5 cut(s)	22, 75, 167, 348, 633
DpnII	GATC	5 cut(s)	20, 73, 165, 346, 631
DraIII	CACNNNGTG	1 cut(s)	863
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	511, 522
Eco47I	GGWCC	2 cut(s)	573, 788
Eco88I	CYCGRG	1 cut(s)	553
EcoO109I	RGGNCCY	1 cut(s)	788
EcoT14I	CCWWGG	2 cut(s)	511, 522
EcoT22I	ATGCAT	2 cut(s)	662, 799
ErhI	CCWWGG	2 cut(s)	511, 522
FaeI	CATG	8 cut(s)	107, 137, 247, 515, 566, 573, 647, 877
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	8 cut(s)	103, 133, 243, 511, 562, 569, 643, 873
FauNDI	CATATG	1 cut(s)	934
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	111, 764
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	2 cut(s)	111, 764
FspBI	CTAG	1 cut(s)	965
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	111, 764
GsuI	CTGGAG	1 cut(s)	767
HaeIII	GGCC	3 cut(s)	369, 521, 561
HapII	CCGG	1 cut(s)	777
HgaI	GACGC	2 cut(s)	418, 831
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	2 cut(s)	429, 842
Hin1II	CATG	8 cut(s)	107, 137, 247, 515, 566, 573, 647, 877
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	896
HindII	GTYRAC	1 cut(s)	896
HinfI	GANTC	4 cut(s)	13, 407, 470, 977
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	2 cut(s)	83, 344
Hpy166II	GTNNAC	3 cut(s)	90, 846, 896
Hpy188I	TCNGA	2 cut(s)	714, 885
Hpy188III	TCNNGA	4 cut(s)	169, 463, 553, 704
Hpy8I	GTNNAC	3 cut(s)	90, 846, 896
HpyAV	CCTTC	3 cut(s)	208, 530, 679
HpyCH4III	ACNGT	2 cut(s)	203, 259
HpyCH4IV	ACGT	3 cut(s)	86, 823, 888
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 139, 366, 729, 834, 848
HpyF3I	CTNAG	2 cut(s)	586, 860
HpySE526I	ACGT	3 cut(s)	86, 823, 888
Hsp92I	GRCGYC	2 cut(s)	429, 842
Hsp92II	CATG	8 cut(s)	107, 137, 247, 515, 566, 573, 647, 877
HspAI	GCGC	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	73
KspI	CCGCGG	1 cut(s)	114
Kzo9I	GATC	5 cut(s)	20, 73, 165, 346, 631
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	1 cut(s)	750
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	1 cut(s)	965
MaeII	ACGT	3 cut(s)	86, 823, 888
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	5 cut(s)	22, 75, 167, 348, 633
MboI	GATC	5 cut(s)	20, 73, 165, 346, 631
MboII	GAAGA	3 cut(s)	307, 310, 341
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	2 cut(s)	481, 829
MluNI	TGGCCA	1 cut(s)	561
MnlI	CCTC	7 cut(s)	242, 327, 683, 742, 808, 978, 981
Mox20I	TGGCCA	1 cut(s)	561
Mph1103I	ATGCAT	2 cut(s)	662, 799
MscI	TGGCCA	1 cut(s)	561
MseI	TTAA	3 cut(s)	51, 621, 960
MslI	CAYNNNNRTG	2 cut(s)	132, 149
Msp20I	TGGCCA	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	959
MspI	CCGG	1 cut(s)	777
Mva1269I	GAATGC	1 cut(s)	360
MvnI	CGCG	2 cut(s)	113, 328
MwoI	GCNNNNNNNGC	6 cut(s)	116, 139, 366, 729, 834, 848
NcoI	CCATGG	1 cut(s)	511
NdeI	CATATG	1 cut(s)	934
NdeII	GATC	5 cut(s)	20, 73, 165, 346, 631
NlaIII	CATG	8 cut(s)	107, 137, 247, 515, 566, 573, 647, 877
NlaIV	GGNNCC	5 cut(s)	22, 109, 297, 724, 789
NmeAIII	GCCGAG	1 cut(s)	818
NsiI	ATGCAT	2 cut(s)	662, 799
NspI	RCATGY	1 cut(s)	647
PaqCI	CACCTGC	1 cut(s)	52
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	4 cut(s)	13, 407, 470, 977
PflMI	CCANNNNNTGG	1 cut(s)	811
PkrI	GCNGC	2 cut(s)	112, 765
Ppu21I	YACGTR	2 cut(s)	87, 824
PpuMI	RGGWCCY	1 cut(s)	788
Psp1406I	AACGTT	1 cut(s)	888
Psp5II	RGGWCCY	1 cut(s)	788
PspN4I	GGNNCC	5 cut(s)	22, 109, 297, 724, 789
PspPI	GGNCC	2 cut(s)	573, 788
PspPPI	RGGWCCY	1 cut(s)	788
PsuI	RGATCY	1 cut(s)	20
RsaI	GTAC	4 cut(s)	89, 239, 605, 903
RsaNI	GTAC	4 cut(s)	88, 238, 604, 902
RseI	CAYNNNNRTG	2 cut(s)	132, 149
SacII	CCGCGG	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	51, 621, 960
SatI	GCNGC	2 cut(s)	111, 764
Sau3AI	GATC	5 cut(s)	20, 73, 165, 346, 631
Sau96I	GGNCC	2 cut(s)	573, 788
SduI	GDGCHC	1 cut(s)	86
SfaNI	GCATC	1 cut(s)	694
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	573, 788
SmiMI	CAYNNNNRTG	2 cut(s)	132, 149
SmlI	CTYRAG	3 cut(s)	233, 607, 959
SmoI	CTYRAG	3 cut(s)	233, 607, 959
Sse9I	AATT	2 cut(s)	481, 829
SsiI	CCGC	4 cut(s)	10, 40, 111, 113
SspMI	CTAG	1 cut(s)	965
StyI	CCWWGG	2 cut(s)	511, 522
TaaI	ACNGT	2 cut(s)	203, 259
TaiI	ACGT	3 cut(s)	89, 826, 891
TaqI	TCGA	3 cut(s)	168, 473, 634
TasI	AATT	2 cut(s)	481, 829
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	4 cut(s)	13, 407, 470, 977
Tru1I	TTAA	3 cut(s)	51, 621, 960
Tru9I	TTAA	3 cut(s)	51, 621, 960
TscAI	CASTG	4 cut(s)	262, 704, 853, 868
TseI	GCWGC	1 cut(s)	763
TspDTI	ATGAA	4 cut(s)	260, 558, 918, 984
TspRI	CASTG	4 cut(s)	262, 704, 853, 868
Van91I	CCANNNNNTGG	1 cut(s)	811
Vha464I	CTTAAG	1 cut(s)	959
VpaK11BI	GGWCC	2 cut(s)	573, 788
XceI	RCATGY	1 cut(s)	647
XcmI	CCANNNNNNNNNTGG	2 cut(s)	362, 446
XspI	CTAG	1 cut(s)	965
Zsp2I	ATGCAT	2 cut(s)	662, 799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.