MD13G1034800.v1.1

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0004265
Physical Location & Seq
Reverse (-)
2443319 .. 2446483
3165 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1034800.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGGCGTGGAGGAATCTGGGATCTCTTTTTAACTTCCGGGGTATCCTTCAGGGAAGAACCCCGGAGATCGAACTGGGAAGAAGGTACACGATTAAATCCCATGGAGCTGCACTTGCAAAGAACCACATGTACGATTGGCTTATACTGCTGCTCCTTGCAGTGACAGAGCTCATTTTGTACATCATTTATCCGTTCTACCGTTTCGTGGGGAAGGATATGATGGAAGACCTTAGATATCCCATGAAAGCGAACACGGTGCCTGTGTGGGCTGTCCCTATGTACTCGGTTTTGTTGCCTGTTGTGATTTTCCTCTTTTTCTATATGCGTCGGAAAGATGTCCATGATCTGCACCATAGCATTCTAGGCCTCTTGTTCGCCGTGCTGATTACTGGTGTTATCACGGATGCAATAAAAAATGCTGTTGGCCGGCCTCGACCAGACTTCTTTTGGCGTTGCTTTCCCGATGGAAAAGATGTTTATGATCAGCTTGGGGGTGTAGTGTGCCATGGTAAGGACAGTGACATAAAGGAAGGACATAAGAGTTTTCCAAGTGGTCACTCTTCATGGTCCTTTGCAGGTTTAGGATTTCTCTCGTTGTACTTGTGCGGGAAGATTAAAGCATTTGATCGCAAAGGGCACGTTGCAAAGCTATGTATTGTCTTGCTTCCTCTGCTTGCTGCGTCTCTCGTTGCCATTTCAAGAGTAGATGACTATTGGCACCATTGGCAAGATGTGTTTGCTGGAGGTCTCTTAGGACTTGTTGTGGCTTCATTTTGTTACCGGCAATTCTTCCCTTCCCCTTATCATGATCAAGGATGGGGTCCTTATGCGTATTTCTCCGCTTTGGAGGAGACGCGTATCCTTTCACATCTGGGTGTTAATCCTACGAACAATGCACCGAGTGTGCAGGTGACGGGGGCTCGGAATGTGGACGAACAACACATACAGAATAGCGATGCATTTACAGCATTCTCTGGAAACCGATACACAAGCATTAGGCTGCATGAAATGGAATCAGGCGGAAGGTAG

Protein Analysis

343

Amino Acids

38.74

Weight (kDa)

8.85

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 121 - 264 3.6e-32 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 898
Acc36I ACCTGC 2 cut(s) 566, 898
AccB1I GGYRCC 2 cut(s) 256, 717
AccII CGCG 1 cut(s) 856
AciI CCGC 3 cut(s) 606, 840, 1020
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 32
AdeI CACNNNGTG 1 cut(s) 902
AfaI GTAC 5 cut(s) 86, 131, 179, 281, 599
AfiI CCNNNNNNNGG 2 cut(s) 205, 511
AflIII ACRYGT 2 cut(s) 126, 854
AgsI TTSAA 1 cut(s) 699
AluBI AGCT 4 cut(s) 107, 169, 487, 649
AluI AGCT 4 cut(s) 107, 169, 487, 649
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 3 cut(s) 687, 752, 845
AlwI GGATC 1 cut(s) 28
AoxI GGCC 3 cut(s) 364, 424, 428
ApeKI GCWGC 4 cut(s) 107, 148, 677, 1000
AspS9I GGNCC 2 cut(s) 567, 821
AsuC2I CCSGG 2 cut(s) 38, 62
AsuHPI GGTGA 1 cut(s) 922
AvaII GGWCC 2 cut(s) 567, 821
BaeGI GKGCMC 1 cut(s) 639
BanI GGYRCC 2 cut(s) 256, 717
BanII GRGCYC 2 cut(s) 171, 922
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 4 cut(s) 94, 135, 664, 987
BccI CCATC 3 cut(s) 214, 458, 810
BceAI ACGGC 1 cut(s) 362
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciVI GTATCC 2 cut(s) 53, 869
BclI TGATCA 2 cut(s) 481, 808
BcnI CCSGG 2 cut(s) 38, 62
BcoDI GTCTC 3 cut(s) 687, 752, 845
BfaI CTAG 1 cut(s) 362
BfuAI ACCTGC 2 cut(s) 566, 898
BfuI GTATCC 2 cut(s) 53, 869
BisI GCNGC 4 cut(s) 108, 149, 678, 1001
BlsI GCNGC 4 cut(s) 109, 150, 679, 1002
Bme1390I CCNGG 2 cut(s) 38, 62
Bme18I GGWCC 2 cut(s) 567, 821
BmgT120I GGNCC 2 cut(s) 567, 821
BmiI GGNNCC 3 cut(s) 258, 719, 822
BmrFI CCNGG 2 cut(s) 38, 62
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 2 cut(s) 394, 946
BmuI ACTGGG 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 762
BpuMI CCSGG 2 cut(s) 38, 62
BsaI GGTCTC 1 cut(s) 752
BsaJI CCNNGG 4 cut(s) 37, 60, 100, 505
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 511
Bse118I RCCGGY 2 cut(s) 426, 780
Bse1I ACTGG 2 cut(s) 78, 394
BseDI CCNNGG 4 cut(s) 37, 60, 100, 505
BseGI GGATG 2 cut(s) 409, 821
BseLI CCNNNNNNNGG 2 cut(s) 205, 511
BseNI ACTGG 2 cut(s) 78, 394
BseRI GAGGAG 1 cut(s) 863
BseSI GKGCMC 1 cut(s) 639
BseXI GCAGC 4 cut(s) 94, 135, 664, 987
BsgI GTGCAG 3 cut(s) 93, 332, 926
Bsh1236I CGCG 1 cut(s) 856
BshFI GGCC 3 cut(s) 366, 426, 430
BshNI GGYRCC 2 cut(s) 256, 717
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 4 cut(s) 37, 62, 427, 781
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 205, 511
BsmAI GTCTC 3 cut(s) 687, 752, 845
BsmBI CGTCTC 2 cut(s) 687, 845
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 2 cut(s) 357, 968
BsnI GGCC 3 cut(s) 366, 426, 430
Bso31I GGTCTC 1 cut(s) 752
Bsp1286I GDGCHC 3 cut(s) 171, 639, 922
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 6 cut(s) 20, 66, 343, 481, 625, 808
Bsp19I CCATGG 2 cut(s) 100, 505
BspACI CCGC 3 cut(s) 606, 840, 1020
BspANI GGCC 3 cut(s) 366, 426, 430
BspFNI CGCG 1 cut(s) 856
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 3 cut(s) 258, 719, 822
BspMI ACCTGC 2 cut(s) 566, 898
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 2 cut(s) 256, 717
BspTNI GGTCTC 1 cut(s) 752
BsrFI RCCGGY 2 cut(s) 426, 780
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 2 cut(s) 78, 394
BssAI RCCGGY 2 cut(s) 426, 780
BssECI CCNNGG 4 cut(s) 37, 60, 100, 505
BssMI GATC 6 cut(s) 20, 66, 343, 481, 625, 808
BssT1I CCWWGG 2 cut(s) 100, 505
Bst4CI ACNGT 3 cut(s) 200, 256, 518
Bst6I CTCTTC 1 cut(s) 565
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 428, 675
BstDEI CTNAG 2 cut(s) 230, 751
BstDSI CCRYGG 2 cut(s) 100, 505
BstF5I GGATG 2 cut(s) 409, 821
BstFNI CGCG 1 cut(s) 856
BstKTI GATC 6 cut(s) 23, 69, 346, 484, 628, 811
BstMAI GTCTC 3 cut(s) 687, 752, 845
BstMBI GATC 6 cut(s) 20, 66, 343, 481, 625, 808
BstMWI GCNNNNNNNGC 6 cut(s) 113, 145, 363, 670, 724, 965
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 36, 60
BstSLI GKGCMC 1 cut(s) 639
BstUI CGCG 1 cut(s) 856
BstV1I GCAGC 4 cut(s) 94, 135, 664, 987
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuI GTATCC 2 cut(s) 53, 869
BsuRI GGCC 3 cut(s) 366, 426, 430
BtgI CCRYGG 2 cut(s) 100, 505
BtgZI GCGATG 1 cut(s) 969
BtsCI GGATG 2 cut(s) 409, 821
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 165, 523
BveI ACCTGC 2 cut(s) 566, 898
Cac8I GCNNGC 2 cut(s) 428, 675
CciI TCATGA 1 cut(s) 805
Cfr10I RCCGGY 2 cut(s) 426, 780
Cfr13I GGNCC 2 cut(s) 567, 821
CseI GACGC 3 cut(s) 314, 669, 862
Csp6I GTAC 5 cut(s) 85, 130, 178, 280, 598
CviAII CATG 8 cut(s) 101, 127, 241, 341, 506, 564, 806, 1004
CviQI GTAC 5 cut(s) 85, 130, 178, 280, 598
DdeI CTNAG 2 cut(s) 230, 751
DpnI GATC 6 cut(s) 22, 68, 345, 483, 627, 810
DpnII GATC 6 cut(s) 20, 66, 343, 481, 625, 808
DraIII CACNNNGTG 1 cut(s) 902
EaeI YGGCCR 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 565
EarI CTCTTC 1 cut(s) 565
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 2 cut(s) 100, 505
Eco147I AGGCCT 1 cut(s) 366
Eco24I GRGCYC 2 cut(s) 171, 922
Eco31I GGTCTC 1 cut(s) 752
Eco32I GATATC 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 567, 821
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 821
EcoRV GATATC 1 cut(s) 236
EcoT14I CCWWGG 2 cut(s) 100, 505
EcoT22I ATGCAT 1 cut(s) 961
EcoT38I GRGCYC 2 cut(s) 171, 922
ErhI CCWWGG 2 cut(s) 100, 505
Esp3I CGTCTC 2 cut(s) 687, 845
FaeI CATG 8 cut(s) 104, 130, 244, 344, 509, 567, 809, 1007
FaqI GGGAC 1 cut(s) 257
FatI CATG 8 cut(s) 100, 126, 240, 340, 505, 563, 805, 1003
FauI CCCGC 1 cut(s) 599
FbaI TGATCA 2 cut(s) 481, 808
Fnu4HI GCNGC 4 cut(s) 108, 149, 678, 1001
FokI GGATG 2 cut(s) 416, 828
FriOI GRGCYC 2 cut(s) 171, 922
FseI GGCCGGCC 1 cut(s) 430
Fsp4HI GCNGC 4 cut(s) 108, 149, 678, 1001
FspBI CTAG 1 cut(s) 362
GluI GCNGC 4 cut(s) 108, 149, 678, 1001
GsuI CTGGAG 1 cut(s) 762
HaeIII GGCC 3 cut(s) 366, 426, 430
HapII CCGG 4 cut(s) 37, 62, 427, 781
HgaI GACGC 3 cut(s) 314, 669, 862
Hin1II CATG 8 cut(s) 104, 130, 244, 344, 509, 567, 809, 1007
HinfI GANTC 2 cut(s) 13, 1013
HpaII CCGG 4 cut(s) 37, 62, 427, 781
HphI GGTGA 1 cut(s) 922
Hpy166II GTNNAC 2 cut(s) 87, 931
Hpy188I TCNGA 2 cut(s) 330, 924
Hpy188III TCNNGA 4 cut(s) 461, 699, 806, 975
Hpy8I GTNNAC 2 cut(s) 87, 931
Hpy99I CGWCG 1 cut(s) 330
HpyAV CCTTC 6 cut(s) 56, 75, 205, 524, 804, 1017
HpyCH4III ACNGT 3 cut(s) 200, 256, 518
HpyCH4IV ACGT 1 cut(s) 639
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 145, 363, 670, 724, 965
HpyF3I CTNAG 2 cut(s) 230, 751
HpySE526I ACGT 1 cut(s) 639
Hsp92II CATG 8 cut(s) 104, 130, 244, 344, 509, 567, 809, 1007
KroI GCCGGC 1 cut(s) 426
KroNI GCCGGC 1 cut(s) 428
Ksp22I TGATCA 2 cut(s) 481, 808
Kzo9I GATC 6 cut(s) 20, 66, 343, 481, 625, 808
LmnI GCTCC 2 cut(s) 104, 156
Lsp1109I GCAGC 4 cut(s) 94, 135, 664, 987
LweI GCATC 2 cut(s) 394, 946
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 5 cut(s) 160, 518, 554, 776, 910
MalI GATC 6 cut(s) 22, 68, 345, 483, 627, 810
MboI GATC 6 cut(s) 20, 66, 343, 481, 625, 808
MboII GAAGA 6 cut(s) 66, 90, 236, 552, 622, 781
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 3 cut(s) 171, 639, 922
MluCI AATT 1 cut(s) 785
MluI ACGCGT 1 cut(s) 854
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 7 cut(s) 3, 320, 377, 441, 678, 737, 841
Mph1103I ATGCAT 1 cut(s) 961
MroNI GCCGGC 1 cut(s) 426
MseI TTAA 4 cut(s) 30, 93, 615, 879
MslI CAYNNNNRTG 1 cut(s) 873
MspI CCGG 4 cut(s) 37, 62, 427, 781
MspR9I CCNGG 2 cut(s) 38, 62
Mva1269I GAATGC 2 cut(s) 357, 968
MvnI CGCG 1 cut(s) 856
MwoI GCNNNNNNNGC 6 cut(s) 113, 145, 363, 670, 724, 965
NaeI GCCGGC 1 cut(s) 428
NciI CCSGG 2 cut(s) 38, 62
NcoI CCATGG 2 cut(s) 100, 505
NdeII GATC 6 cut(s) 20, 66, 343, 481, 625, 808
NgoMIV GCCGGC 1 cut(s) 426
NlaIII CATG 8 cut(s) 104, 130, 244, 344, 509, 567, 809, 1007
NlaIV GGNNCC 3 cut(s) 258, 719, 822
NmuCI GTSAC 4 cut(s) 160, 518, 554, 910
NsiI ATGCAT 1 cut(s) 961
NspI RCATGY 1 cut(s) 130
PagI TCATGA 1 cut(s) 805
PaqCI CACCTGC 1 cut(s) 898
PceI AGGCCT 1 cut(s) 366
PciI ACATGT 1 cut(s) 126
PctI GAATGC 2 cut(s) 357, 968
PdiI GCCGGC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 13, 1013
PkrI GCNGC 4 cut(s) 109, 150, 679, 1002
PpuMI RGGWCCY 1 cut(s) 821
PscI ACATGT 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 821
PspN4I GGNNCC 3 cut(s) 258, 719, 822
PspPI GGNCC 2 cut(s) 567, 821
PspPPI RGGWCCY 1 cut(s) 821
PsrI GAACNNNNNNTAC 4 cut(s) 113, 145, 927, 959
PsuI RGATCY 1 cut(s) 20
RigI GGCCGGCC 1 cut(s) 430
RsaI GTAC 5 cut(s) 86, 131, 179, 281, 599
RsaNI GTAC 5 cut(s) 85, 130, 178, 280, 598
RseI CAYNNNNRTG 1 cut(s) 873
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 4 cut(s) 30, 93, 615, 879
SatI GCNGC 4 cut(s) 108, 149, 678, 1001
Sau3AI GATC 6 cut(s) 20, 66, 343, 481, 625, 808
Sau96I GGNCC 2 cut(s) 567, 821
ScrFI CCNGG 2 cut(s) 38, 62
SduI GDGCHC 3 cut(s) 171, 639, 922
SfaNI GCATC 2 cut(s) 394, 946
SinI GGWCC 2 cut(s) 567, 821
SmiMI CAYNNNNRTG 1 cut(s) 873
Sse9I AATT 1 cut(s) 785
SseBI AGGCCT 1 cut(s) 366
SsiI CCGC 3 cut(s) 606, 840, 1020
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 171
StuI AGGCCT 1 cut(s) 366
StyD4I CCNGG 2 cut(s) 36, 60
StyI CCWWGG 2 cut(s) 100, 505
TaaI ACNGT 3 cut(s) 200, 256, 518
TaiI ACGT 1 cut(s) 642
TaqI TCGA 2 cut(s) 69, 433
TasI AATT 1 cut(s) 785
TatI WGTACW 3 cut(s) 177, 279, 597
TfiI GAWTC 2 cut(s) 13, 1013
Tru1I TTAA 4 cut(s) 30, 93, 615, 879
Tru9I TTAA 4 cut(s) 30, 93, 615, 879
TscAI CASTG 2 cut(s) 165, 523
TseFI GTSAC 4 cut(s) 160, 518, 554, 910
TseI GCWGC 4 cut(s) 107, 148, 677, 1000
Tsp45I GTSAC 4 cut(s) 160, 518, 554, 910
TspDTI ATGAA 4 cut(s) 257, 552, 759, 1020
TspGWI ACGGA 2 cut(s) 180, 416
TspRI CASTG 2 cut(s) 165, 523
VpaK11BI GGWCC 2 cut(s) 567, 821
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 444
XspI CTAG 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.