Rh4DG334300

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004265
Physical Location & Seq
Reverse (-)
55732211 .. 55735155
2945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG334300.1

Sequence Viewer

Length: 810 bp
ATGATGACTGACCTTAAGTACCCCATGAAAGCAAACACTGTCCCTGTTTGGGCTGTTCCTATGTATGCAGTCTTGGTTCCTATTGCCATTTTTCTTTTCTTCTATGCGCGTAGGAGAGATGTGTATGATCTTCACCACAGCATTCTTGGCCTGTTATTTGCTGTGTTGGTTACTGCTGTCATTACTGATTCAATAAAAAATGGAGTTGGGCGTCCCAGACCAGATTTCTTTTGGCGTTGCTTTCCTGATGGAATCGATAATTATGATAAGTGGGGAGATGTGGTGTGCCATGGTAAGGCCAAGGACATAAAGGAAGGGCATAAGAGTTTCCCGAGTGGCCATACTTCATGGTCCTTTGCAGGCTTAGGCTTCCTTGCCTTGTACTTGAGTGGAAAGATTAAAGTTTTTGATCGAAAAGGGCATGTTGCGAAACTATGCATTGTCTCCCTTCCTCTACTGGTTGCATCTCTCGTTGCAGTGTCCAGAGTATCTGACTATTGGCACCATTGGCAAGATGTGTTTGCTGGAGGTCTTTTAGGATTTGTTGTGGCTGCATTTTGCTACCGGCAGTTCTTCCCTGCCCCTTATCATGATCAAGGATGGGGTCCTTATGCATATTTCCAAGCATTGGAGGAGACGCGTAGCAATTCAAGCTCGGCGTCCACTGCAAATGCACTCAGTGTGCAGGTCATGGGGGTTCAGAACGTTACTCAACCTGTTCCTGCACAAAATGGTGTTGCATTTTCATCATATGCTTCAAATCAATATACAAGCCTTAAGCTAGATGAAATGGAATCTGGGAGGCGGTGA

Protein Analysis

269

Amino Acids

30.0

Weight (kDa)

8.95

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 49 - 192 2.9e-32 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 676
AccB1I GGYRCC 1 cut(s) 501
AccB7I CCANNNNNTGG 1 cut(s) 628
AccII CGCG 2 cut(s) 109, 640
AciI CCGC 1 cut(s) 805
AclI AACGTT 1 cut(s) 705
AcoI YGGCCR 1 cut(s) 337
AcyI GRCGYC 2 cut(s) 211, 659
AdeI CACNNNGTG 1 cut(s) 680
AfaI GTAC 2 cut(s) 20, 383
AfiI CCNNNNNNNGG 3 cut(s) 49, 295, 628
AflII CTTAAG 2 cut(s) 14, 776
AflIII ACRYGT 1 cut(s) 638
AgsI TTSAA 3 cut(s) 192, 651, 759
AluBI AGCT 2 cut(s) 654, 781
AluI AGCT 2 cut(s) 654, 781
Alw26I GTCTC 2 cut(s) 448, 629
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 3 cut(s) 148, 297, 337
ApeKI GCWGC 1 cut(s) 551
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 2 cut(s) 351, 605
AsuHPI GGTGA 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 2 cut(s) 351, 605
BalI TGGCCA 1 cut(s) 339
BanI GGYRCC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 538
BccI CCATC 2 cut(s) 242, 594
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 2 cut(s) 448, 629
BfaI CTAG 1 cut(s) 782
BfrI CTTAAG 2 cut(s) 14, 776
BfuAI ACCTGC 1 cut(s) 676
BisI GCNGC 1 cut(s) 552
BlsI GCNGC 1 cut(s) 553
Bme18I GGWCC 2 cut(s) 351, 605
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 351, 605
BmiI GGNNCC 3 cut(s) 78, 503, 606
BmsI GCATC 1 cut(s) 473
BpmI CTGGAG 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 364
BpuEI CTTGAG 1 cut(s) 406
Bsa29I ATCGAT 1 cut(s) 255
BsaHI GRCGYC 2 cut(s) 211, 659
BsaJI CCNNGG 2 cut(s) 289, 300
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 295, 628
Bse118I RCCGGY 1 cut(s) 564
Bse1I ACTGG 1 cut(s) 462
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 289, 300
BseGI GGATG 1 cut(s) 605
BseLI CCNNNNNNNGG 3 cut(s) 49, 295, 628
BseMII CTCAG 1 cut(s) 691
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 647
BseXI GCAGC 1 cut(s) 538
BsgI GTGCAG 2 cut(s) 704, 708
Bsh1236I CGCG 2 cut(s) 109, 640
BshFI GGCC 3 cut(s) 150, 299, 339
BshNI GGYRCC 1 cut(s) 501
BshVI ATCGAT 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 1 cut(s) 565
BslFI GGGAC 2 cut(s) 26, 198
BslI CCNNNNNNNGG 3 cut(s) 49, 295, 628
BsmAI GTCTC 2 cut(s) 448, 629
BsmBI CGTCTC 1 cut(s) 629
BsmFI GGGAC 2 cut(s) 26, 198
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 3 cut(s) 150, 299, 339
BsoBI CYCGRG 1 cut(s) 331
Bsp143I GATC 3 cut(s) 127, 409, 592
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 1 cut(s) 805
BspANI GGCC 3 cut(s) 150, 299, 339
BspCNI CTCAG 1 cut(s) 690
BspDI ATCGAT 1 cut(s) 255
BspFNI CGCG 2 cut(s) 109, 640
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 3 cut(s) 78, 503, 606
BspMI ACCTGC 1 cut(s) 676
BspT107I GGYRCC 1 cut(s) 501
BspTI CTTAAG 2 cut(s) 14, 776
BsrFI RCCGGY 1 cut(s) 564
BsrI ACTGG 1 cut(s) 462
BssAI RCCGGY 1 cut(s) 564
BssECI CCNNGG 2 cut(s) 289, 300
BssMI GATC 3 cut(s) 127, 409, 592
BssNI GRCGYC 2 cut(s) 211, 659
BssT1I CCWWGG 2 cut(s) 289, 300
Bst4CI ACNGT 1 cut(s) 40
BstACI GRCGYC 2 cut(s) 211, 659
BstAFI CTTAAG 2 cut(s) 14, 776
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 364, 677
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 605
BstFNI CGCG 2 cut(s) 109, 640
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 3 cut(s) 130, 412, 595
BstMAI GTCTC 2 cut(s) 448, 629
BstMBI GATC 3 cut(s) 127, 409, 592
BstMWI GCNNNNNNNGC 4 cut(s) 147, 508, 651, 665
BstNSI RCATGY 1 cut(s) 425
BstUI CGCG 2 cut(s) 109, 640
BstV1I GCAGC 1 cut(s) 538
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 3 cut(s) 150, 299, 339
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 1 cut(s) 605
BtsI GCAGTG 2 cut(s) 483, 663
BtsIMutI CAGTG 4 cut(s) 36, 483, 663, 685
BveI ACCTGC 1 cut(s) 676
Cac8I GCNNGC 1 cut(s) 361
CciI TCATGA 1 cut(s) 589
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 564
Cfr13I GGNCC 2 cut(s) 351, 605
ClaI ATCGAT 1 cut(s) 255
CseI GACGC 3 cut(s) 200, 646, 648
Csp6I GTAC 2 cut(s) 19, 382
CviAII CATG 6 cut(s) 25, 290, 348, 422, 590, 691
CviQI GTAC 2 cut(s) 19, 382
DdeI CTNAG 2 cut(s) 364, 677
DpnI GATC 3 cut(s) 129, 411, 594
DpnII GATC 3 cut(s) 127, 409, 592
DraIII CACNNNGTG 1 cut(s) 680
EaeI YGGCCR 1 cut(s) 337
Eco130I CCWWGG 2 cut(s) 289, 300
Eco47I GGWCC 2 cut(s) 351, 605
Eco88I CYCGRG 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 605
EcoT14I CCWWGG 2 cut(s) 289, 300
EcoT22I ATGCAT 2 cut(s) 440, 616
ErhI CCWWGG 2 cut(s) 289, 300
Esp3I CGTCTC 1 cut(s) 629
FaeI CATG 6 cut(s) 28, 293, 351, 425, 593, 694
FaqI GGGAC 2 cut(s) 26, 198
FatI CATG 6 cut(s) 24, 289, 347, 421, 589, 690
FauNDI CATATG 1 cut(s) 751
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 1 cut(s) 552
FokI GGATG 1 cut(s) 612
Fsp4HI GCNGC 1 cut(s) 552
FspBI CTAG 1 cut(s) 782
GlaI GCGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 552
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 3 cut(s) 150, 299, 339
HapII CCGG 1 cut(s) 565
HgaI GACGC 3 cut(s) 200, 646, 648
HhaI GCGC 1 cut(s) 109
Hin1I GRCGYC 2 cut(s) 211, 659
Hin1II CATG 6 cut(s) 28, 293, 351, 425, 593, 694
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 3 cut(s) 188, 252, 794
HpaII CCGG 1 cut(s) 565
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 2 cut(s) 493, 702
Hpy188III TCNNGA 4 cut(s) 245, 331, 483, 590
Hpy8I GTNNAC 1 cut(s) 663
HpyAV CCTTC 2 cut(s) 308, 458
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 705
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 508, 651, 665
HpyF3I CTNAG 2 cut(s) 364, 677
HpySE526I ACGT 1 cut(s) 705
Hsp92I GRCGYC 2 cut(s) 211, 659
Hsp92II CATG 6 cut(s) 28, 293, 351, 425, 593, 694
HspAI GCGC 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 3 cut(s) 127, 409, 592
Lsp1109I GCAGC 1 cut(s) 538
LweI GCATC 1 cut(s) 473
MaeI CTAG 1 cut(s) 782
MaeII ACGT 1 cut(s) 705
MaeIII GTNAC 2 cut(s) 169, 706
MalI GATC 3 cut(s) 129, 411, 594
MboI GATC 3 cut(s) 127, 409, 592
MboII GAAGA 3 cut(s) 91, 122, 565
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 2 cut(s) 259, 646
MluI ACGCGT 1 cut(s) 638
MluNI TGGCCA 1 cut(s) 339
MnlI CCTC 4 cut(s) 462, 521, 625, 795
Mox20I TGGCCA 1 cut(s) 339
Mph1103I ATGCAT 2 cut(s) 440, 616
MscI TGGCCA 1 cut(s) 339
MseI TTAA 3 cut(s) 15, 399, 777
Msp20I TGGCCA 1 cut(s) 339
MspCI CTTAAG 2 cut(s) 14, 776
MspI CCGG 1 cut(s) 565
Mva1269I GAATGC 1 cut(s) 141
MvnI CGCG 2 cut(s) 109, 640
MwoI GCNNNNNNNGC 4 cut(s) 147, 508, 651, 665
NcoI CCATGG 1 cut(s) 289
NdeI CATATG 1 cut(s) 751
NdeII GATC 3 cut(s) 127, 409, 592
NlaIII CATG 6 cut(s) 28, 293, 351, 425, 593, 694
NlaIV GGNNCC 3 cut(s) 78, 503, 606
NmeAIII GCCGAG 1 cut(s) 635
NsiI ATGCAT 2 cut(s) 440, 616
NspI RCATGY 1 cut(s) 425
PagI TCATGA 1 cut(s) 589
PctI GAATGC 1 cut(s) 141
PfeI GAWTC 3 cut(s) 188, 252, 794
PflMI CCANNNNNTGG 1 cut(s) 628
PkrI GCNGC 1 cut(s) 553
PpuMI RGGWCCY 1 cut(s) 605
Psp1406I AACGTT 1 cut(s) 705
Psp5II RGGWCCY 1 cut(s) 605
PspN4I GGNNCC 3 cut(s) 78, 503, 606
PspPI GGNCC 2 cut(s) 351, 605
PspPPI RGGWCCY 1 cut(s) 605
RsaI GTAC 2 cut(s) 20, 383
RsaNI GTAC 2 cut(s) 19, 382
SaqAI TTAA 3 cut(s) 15, 399, 777
SatI GCNGC 1 cut(s) 552
Sau3AI GATC 3 cut(s) 127, 409, 592
Sau96I GGNCC 2 cut(s) 351, 605
SetI ASST 7 cut(s) 15, 532, 656, 690, 708, 718, 783
SfaNI GCATC 1 cut(s) 473
SinI GGWCC 2 cut(s) 351, 605
SmlI CTYRAG 3 cut(s) 14, 385, 776
SmoI CTYRAG 3 cut(s) 14, 385, 776
Sse9I AATT 2 cut(s) 259, 646
SsiI CCGC 1 cut(s) 805
SspMI CTAG 1 cut(s) 782
StyI CCWWGG 2 cut(s) 289, 300
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 708
TaqI TCGA 2 cut(s) 255, 412
TasI AATT 2 cut(s) 259, 646
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 3 cut(s) 188, 252, 794
Tru1I TTAA 3 cut(s) 15, 399, 777
Tru9I TTAA 3 cut(s) 15, 399, 777
TscAI CASTG 4 cut(s) 43, 483, 670, 685
TseI GCWGC 1 cut(s) 551
TspDTI ATGAA 4 cut(s) 41, 336, 735, 801
TspRI CASTG 4 cut(s) 43, 483, 670, 685
Van91I CCANNNNNTGG 1 cut(s) 628
Vha464I CTTAAG 2 cut(s) 14, 776
VpaK11BI GGWCC 2 cut(s) 351, 605
XceI RCATGY 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 2 cut(s) 143, 228
XspI CTAG 1 cut(s) 782
Zsp2I ATGCAT 2 cut(s) 440, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.