Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004265

Physical Location & Seq

Genomic Coordinates Reverse (-)

55349112 .. 55351721

Gene Structure 2610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAGAATCCAAAACAAGAAAAGAAAAAGCAAAAAGGGTGATCAACCGGGCACGTACACCATCAAGTCTCATGGAGCCGCGGTTGCCAAGAACCACAAGCATGACTGGCTCATACTCGTGCTTCTTGGGTTGATCGAGATAGTCTTGTATATCATTCAACCTTTCCACCGTTTTGTGGGGAAGGATATGATGACTGACCTTAAGTACCCCATGAAAGCAAACACTGTCCCTGTTTGGGCTGTTCCTATGTATGCAGTCTTGGTTCCTATTGCCATTTTTCTTTTCTTCTATGCGCGTAGGAGAGATGTGTATGATCTTCACCACAGCATTCTTGGCCTGTTGTTTGCTGTGTTGGTTACCGCTGTCATTACTGATTCAATAAAAAATGGAGTTGGGCGTCCTAGACCAGATTTCTTTTGGCGTTGCTTTCCTGATGGAATCGATAATTATGATAAGTGGGGAGATGTGGTGTGCCATGGTAAGGCCAAGGACATAAAGGAAGGACACAAGAGTTTCCCGAGTGGCCATACTTCATGGTCCTTTGCAGGCTTAGGCTTCCTTGCCTTGTACTTGAGTGGAAAGATTAAAGTGTTTGATCGAAAAGGGCATGTTGCGAAACTATGCATTGTCTCCCTTCCTCTACTGGTTGCATCTCTCGTTGCAGTGTCCAGAGTATCTGACTATTGGCACCATTGGCAAGATGTGTTTGCTGGAGGTCTTTTAGGATTTGTTGTGGCTGCATTTTGCTACCGGCAGTTCTTCCCTGCCCCTTATCATGATCAAGGATGGGGTCCTTATGCATATTTCCAAGCATTGGAGGAGACGCGTAGCAATTCAAGCTCGGCGTCCACTGCAAATGCACTCAGTGTGCAGGTCATGGGGGTTCAGAACGTTACTCAACCTGTTCCTGCACCAAATGGTGTTGCATTTTCATCATATGCTTCAAATCAATATACAAGCCTTAAGCTAGATGAAATGGAATCTGGGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

331

Amino Acids

37.11

Weight (kDa)

9.5

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	111 - 254	4.8e-32	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180
fragaria_vesca	FvH4_4g26641
malus_domestica	MD13G1034800.v1.1 MD16G1036500.v1.1
prunus_persica	Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1
pyrus_communis	pycom13g03040 pycom16g03160
rosa_chinensis	RchiOBHm_Chr4g0434341
rosa_laevigata	RLG00000006681
rosa_multiflora	Rmu_sc0000459.1_g000028
rosa_roxburghii	Rroxscaffold_5G00375710
rosa_rugosa	Rorug04G0276000 Rorug04G0276100 Rorug04G0276100 Rorug04G0276200
rosa_samantha	Rh4AG331300 Rh4BG339200 Rh4CG354300 Rh4DG334300
rosa_wichuraiana	Rw4G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	862
AccB1I	GGYRCC	1 cut(s)	687
AccB7I	CCANNNNNTGG	1 cut(s)	814
AccII	CGCG	3 cut(s)	80, 295, 826
AciI	CCGC	3 cut(s)	78, 80, 360
AclI	AACGTT	1 cut(s)	891
AcoI	YGGCCR	1 cut(s)	523
AcyI	GRCGYC	2 cut(s)	397, 845
AdeI	CACNNNGTG	1 cut(s)	866
AfaI	GTAC	3 cut(s)	56, 206, 569
AfiI	CCNNNNNNNGG	4 cut(s)	175, 235, 481, 814
AflII	CTTAAG	2 cut(s)	200, 962
AflIII	ACRYGT	1 cut(s)	824
AgsI	TTSAA	4 cut(s)	158, 378, 837, 945
AluBI	AGCT	2 cut(s)	840, 967
AluI	AGCT	2 cut(s)	840, 967
Alw26I	GTCTC	3 cut(s)	72, 634, 815
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	3 cut(s)	334, 483, 523
ApeKI	GCWGC	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	537, 791
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	2 cut(s)	50, 311
AvaI	CYCGRG	1 cut(s)	517
AvaII	GGWCC	2 cut(s)	537, 791
BaeGI	GKGCMC	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	525
BanI	GGYRCC	1 cut(s)	687
BauI	CACGAG	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	724
BccI	CCATC	3 cut(s)	68, 428, 780
BclI	TGATCA	2 cut(s)	40, 778
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	3 cut(s)	72, 634, 815
BfaI	CTAG	2 cut(s)	402, 968
BfrI	CTTAAG	2 cut(s)	200, 962
BfuAI	ACCTGC	1 cut(s)	862
BisI	GCNGC	2 cut(s)	78, 738
BlsI	GCNGC	2 cut(s)	79, 739
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	537, 791
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	2 cut(s)	537, 791
BmiI	GGNNCC	4 cut(s)	76, 264, 689, 792
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	659
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	550
BpuEI	CTTGAG	1 cut(s)	592
BpuMI	CCSGG	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	441
BsaAI	YACGTR	1 cut(s)	54
BsaHI	GRCGYC	2 cut(s)	397, 845
BsaJI	CCNNGG	3 cut(s)	78, 475, 486
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 453, 483
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 235, 481, 814
Bse118I	RCCGGY	1 cut(s)	750
Bse1I	ACTGG	2 cut(s)	110, 648
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	78, 475, 486
BseGI	GGATG	1 cut(s)	791
BseLI	CCNNNNNNNGG	4 cut(s)	175, 235, 481, 814
BseMII	CTCAG	1 cut(s)	877
BseNI	ACTGG	2 cut(s)	110, 648
BseRI	GAGGAG	1 cut(s)	833
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	724
BsgI	GTGCAG	2 cut(s)	890, 894
Bsh1236I	CGCG	3 cut(s)	80, 295, 826
BshFI	GGCC	3 cut(s)	336, 485, 525
BshNI	GGYRCC	1 cut(s)	687
BshVI	ATCGAT	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	2 cut(s)	47, 751
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	4 cut(s)	175, 235, 481, 814
BsmAI	GTCTC	3 cut(s)	72, 634, 815
BsmBI	CGTCTC	1 cut(s)	815
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	3 cut(s)	336, 485, 525
BsoBI	CYCGRG	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	5 cut(s)	40, 132, 313, 595, 778
Bsp19I	CCATGG	1 cut(s)	475
BspACI	CCGC	3 cut(s)	78, 80, 360
BspANI	GGCC	3 cut(s)	336, 485, 525
BspCNI	CTCAG	1 cut(s)	876
BspDI	ATCGAT	1 cut(s)	441
BspFNI	CGCG	3 cut(s)	80, 295, 826
BspHI	TCATGA	1 cut(s)	775
BspLI	GGNNCC	4 cut(s)	76, 264, 689, 792
BspMI	ACCTGC	1 cut(s)	862
BspT107I	GGYRCC	1 cut(s)	687
BspTI	CTTAAG	2 cut(s)	200, 962
BsrFI	RCCGGY	1 cut(s)	750
BsrI	ACTGG	2 cut(s)	110, 648
BssAI	RCCGGY	1 cut(s)	750
BssECI	CCNNGG	3 cut(s)	78, 475, 486
BssMI	GATC	5 cut(s)	40, 132, 313, 595, 778
BssNI	GRCGYC	2 cut(s)	397, 845
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	2 cut(s)	475, 486
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	170, 226
BstACI	GRCGYC	2 cut(s)	397, 845
BstAFI	CTTAAG	2 cut(s)	200, 962
BstBAI	YACGTR	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	2 cut(s)	550, 863
BstDSI	CCRYGG	2 cut(s)	78, 475
BstEII	GGTNACC	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	791
BstFNI	CGCG	3 cut(s)	80, 295, 826
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	5 cut(s)	43, 135, 316, 598, 781
BstMAI	GTCTC	3 cut(s)	72, 634, 815
BstMBI	GATC	5 cut(s)	40, 132, 313, 595, 778
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 106, 333, 694, 837, 851
BstNSI	RCATGY	1 cut(s)	611
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	3 cut(s)	80, 295, 826
BstV1I	GCAGC	1 cut(s)	724
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	3 cut(s)	336, 485, 525
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	2 cut(s)	78, 475
BtsCI	GGATG	1 cut(s)	791
BtsI	GCAGTG	2 cut(s)	669, 849
BtsIMutI	CAGTG	4 cut(s)	222, 669, 849, 871
BveI	ACCTGC	1 cut(s)	862
Cac8I	GCNNGC	1 cut(s)	547
CciI	TCATGA	1 cut(s)	775
CfoI	GCGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	750
Cfr13I	GGNCC	2 cut(s)	537, 791
Cfr42I	CCGCGG	1 cut(s)	81
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	3 cut(s)	386, 832, 834
Csp6I	GTAC	3 cut(s)	55, 205, 568
CviAII	CATG	8 cut(s)	71, 101, 211, 476, 534, 608, 776, 877
CviQI	GTAC	3 cut(s)	55, 205, 568
DdeI	CTNAG	2 cut(s)	550, 863
DpnI	GATC	5 cut(s)	42, 134, 315, 597, 780
DpnII	GATC	5 cut(s)	40, 132, 313, 595, 778
DraIII	CACNNNGTG	1 cut(s)	866
EaeI	YGGCCR	1 cut(s)	523
Eco130I	CCWWGG	2 cut(s)	475, 486
Eco47I	GGWCC	2 cut(s)	537, 791
Eco88I	CYCGRG	1 cut(s)	517
Eco91I	GGTNACC	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	791
EcoO65I	GGTNACC	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	475, 486
EcoT22I	ATGCAT	2 cut(s)	626, 802
ErhI	CCWWGG	2 cut(s)	475, 486
Esp3I	CGTCTC	1 cut(s)	815
FaeI	CATG	8 cut(s)	74, 104, 214, 479, 537, 611, 779, 880
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	8 cut(s)	70, 100, 210, 475, 533, 607, 775, 876
FauNDI	CATATG	1 cut(s)	937
FbaI	TGATCA	2 cut(s)	40, 778
Fnu4HI	GCNGC	2 cut(s)	78, 738
FokI	GGATG	1 cut(s)	798
Fsp4HI	GCNGC	2 cut(s)	78, 738
FspBI	CTAG	2 cut(s)	402, 968
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	2 cut(s)	78, 738
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	3 cut(s)	336, 485, 525
HapII	CCGG	2 cut(s)	47, 751
HgaI	GACGC	3 cut(s)	386, 832, 834
HhaI	GCGC	1 cut(s)	295
Hin1I	GRCGYC	2 cut(s)	397, 845
Hin1II	CATG	8 cut(s)	74, 104, 214, 479, 537, 611, 779, 880
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	4 cut(s)	6, 374, 438, 980
HpaII	CCGG	2 cut(s)	47, 751
HphI	GGTGA	2 cut(s)	50, 311
Hpy166II	GTNNAC	2 cut(s)	57, 849
Hpy188I	TCNGA	2 cut(s)	679, 888
Hpy188III	TCNNGA	5 cut(s)	136, 431, 517, 669, 776
Hpy8I	GTNNAC	2 cut(s)	57, 849
HpyAV	CCTTC	3 cut(s)	175, 494, 644
HpyCH4III	ACNGT	2 cut(s)	170, 226
HpyCH4IV	ACGT	2 cut(s)	53, 891
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 106, 333, 694, 837, 851
HpyF3I	CTNAG	2 cut(s)	550, 863
HpySE526I	ACGT	2 cut(s)	53, 891
Hsp92I	GRCGYC	2 cut(s)	397, 845
Hsp92II	CATG	8 cut(s)	74, 104, 214, 479, 537, 611, 779, 880
HspAI	GCGC	1 cut(s)	293
Ksp22I	TGATCA	2 cut(s)	40, 778
KspI	CCGCGG	1 cut(s)	81
Kzo9I	GATC	5 cut(s)	40, 132, 313, 595, 778
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	724
LweI	GCATC	1 cut(s)	659
MaeI	CTAG	2 cut(s)	402, 968
MaeII	ACGT	2 cut(s)	53, 891
MaeIII	GTNAC	2 cut(s)	355, 892
MalI	GATC	5 cut(s)	42, 134, 315, 597, 780
MboI	GATC	5 cut(s)	40, 132, 313, 595, 778
MboII	GAAGA	3 cut(s)	277, 308, 751
MhlI	GDGCHC	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	2 cut(s)	445, 832
MluI	ACGCGT	1 cut(s)	824
MluNI	TGGCCA	1 cut(s)	525
MnlI	CCTC	5 cut(s)	648, 707, 811, 981, 984
Mox20I	TGGCCA	1 cut(s)	525
Mph1103I	ATGCAT	2 cut(s)	626, 802
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	3 cut(s)	201, 585, 963
MslI	CAYNNNNRTG	2 cut(s)	99, 116
Msp20I	TGGCCA	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	80, 362
MspCI	CTTAAG	2 cut(s)	200, 962
MspI	CCGG	2 cut(s)	47, 751
MspR9I	CCNGG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	327
MvnI	CGCG	3 cut(s)	80, 295, 826
MwoI	GCNNNNNNNGC	6 cut(s)	83, 106, 333, 694, 837, 851
NciI	CCSGG	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	475
NdeI	CATATG	1 cut(s)	937
NdeII	GATC	5 cut(s)	40, 132, 313, 595, 778
NlaIII	CATG	8 cut(s)	74, 104, 214, 479, 537, 611, 779, 880
NlaIV	GGNNCC	4 cut(s)	76, 264, 689, 792
NmeAIII	GCCGAG	1 cut(s)	821
NsiI	ATGCAT	2 cut(s)	626, 802
NspI	RCATGY	1 cut(s)	611
PagI	TCATGA	1 cut(s)	775
PctI	GAATGC	1 cut(s)	327
PfeI	GAWTC	4 cut(s)	6, 374, 438, 980
PflMI	CCANNNNNTGG	1 cut(s)	814
PkrI	GCNGC	2 cut(s)	79, 739
Ppu21I	YACGTR	1 cut(s)	54
PpuMI	RGGWCCY	1 cut(s)	791
Psp1406I	AACGTT	1 cut(s)	891
Psp5II	RGGWCCY	1 cut(s)	791
PspEI	GGTNACC	1 cut(s)	355
PspN4I	GGNNCC	4 cut(s)	76, 264, 689, 792
PspPI	GGNCC	2 cut(s)	537, 791
PspPPI	RGGWCCY	1 cut(s)	791
RsaI	GTAC	3 cut(s)	56, 206, 569
RsaNI	GTAC	3 cut(s)	55, 205, 568
RseI	CAYNNNNRTG	2 cut(s)	99, 116
SacII	CCGCGG	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	201, 585, 963
SatI	GCNGC	2 cut(s)	78, 738
Sau3AI	GATC	5 cut(s)	40, 132, 313, 595, 778
Sau96I	GGNCC	2 cut(s)	537, 791
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	1 cut(s)	659
Sfr303I	CCGCGG	1 cut(s)	81
SgrBI	CCGCGG	1 cut(s)	81
SinI	GGWCC	2 cut(s)	537, 791
SmiMI	CAYNNNNRTG	2 cut(s)	99, 116
SmlI	CTYRAG	3 cut(s)	200, 571, 962
SmoI	CTYRAG	3 cut(s)	200, 571, 962
Sse9I	AATT	2 cut(s)	445, 832
SsiI	CCGC	3 cut(s)	78, 80, 360
SspMI	CTAG	2 cut(s)	402, 968
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	2 cut(s)	475, 486
TaaI	ACNGT	2 cut(s)	170, 226
TaiI	ACGT	2 cut(s)	56, 894
TaqI	TCGA	3 cut(s)	135, 441, 598
TasI	AATT	2 cut(s)	445, 832
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	4 cut(s)	6, 374, 438, 980
Tru1I	TTAA	3 cut(s)	201, 585, 963
Tru9I	TTAA	3 cut(s)	201, 585, 963
TscAI	CASTG	4 cut(s)	229, 669, 856, 871
TseI	GCWGC	1 cut(s)	737
TspDTI	ATGAA	4 cut(s)	227, 522, 921, 987
TspRI	CASTG	4 cut(s)	229, 669, 856, 871
Van91I	CCANNNNNTGG	1 cut(s)	814
Vha464I	CTTAAG	2 cut(s)	200, 962
VpaK11BI	GGWCC	2 cut(s)	537, 791
XceI	RCATGY	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	2 cut(s)	329, 414
XspI	CTAG	2 cut(s)	402, 968
Zsp2I	ATGCAT	2 cut(s)	626, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.