Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004265

Physical Location & Seq

Genomic Coordinates Forward (+)

30567503 .. 30571061

Gene Structure 3559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G317400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTTGGAGGAATCTGGGATCCCTTTGTTCTTTTTGGAATTTCCGGAGTATCTTTCAGAGCAGAACCACAGAAATTGAACTGGGAACTCACACAATCAAATCTCATGGAGCTGCACTTGCAAAGAATCACATGCATGATTGGCTTATACTGCTGCTTCTTGCAGTTATAGAGGTCATCTTGTTCATCATTCAACCCTTCCACCGTTTTGTGGGAAAGGATATGATGACAGACCTTAAATATCCCATGAAAGGGAACACAGTGCCTGTGTGGGCTGTCCCTATGTATGCAGTTTTGTTGCCTATTGCCGTTTTCGTTTTGTTCTATGCACGTAGGAAAGATGTCTATGATCTGCACCACAGCACTCTAGGCCTCTTATTTGCTGTGCTGATTACTGGGGTTGTCACGGATGCAATCAAAAATGCAGTTGGCCGGCCTCGACCAGATTTCTTTTGGCGATGCTTTCCTGATGGAAAAGATGTTTATGATCAGTGGGGAGGTGTACTGTGCCATGGTAAGGATAGTGACATAAAGGAAGGACATAAGAGTTTCCCAAGTGGTCATGCTTCATGGTCCTTTGCAGGTTTAGGCTTTCTCTCATTGTACTTATGTGGAAAGATTAAAGCATTTGATCGGAAAGGGCACGTGGCAAAATTGTGCATTGTCTTCCTTCCTCTACTTGCTGCATCTCTTGTTGGCATTTCTAGAGTAGATGACTATTGGCATCATTGGCAGGACGTGTTTGCCGGAGGCCTTTTAGGACTTGTTGTGGCTGCATTTTGTTACCGGCAATTCTTCCCTTCCCCTTTTAATGATGAAGGATGGGGTCCTTATGCATATTTCAAAGCTTTGGAGGAGATGCGGAGCAATTCACATGCGGCCAGTCCTGTGAATGCACTCAGTGTGCAGGTGATGGGGGCTCAGAATGTGACTGAACGACGTAGGCAAAATGGGGATCCATTTGCAGCATTATCCGCAGACCGCTATACAAGCATTAGGCTGGATGAAATAGAATCAGGGGCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

343

Amino Acids

38.45

Weight (kDa)

8.81

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180 AT2G01180
fragaria_vesca	FvH4_4g26641
malus_domestica	MD13G1034800.v1.1 MD16G1036500.v1.1
prunus_persica	Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1 Prupe.1G317400_v2.0.a1
pyrus_communis	pycom13g03040 pycom16g03160
rosa_chinensis	RchiOBHm_Chr4g0434341
rosa_laevigata	RLG00000006681
rosa_multiflora	Rmu_sc0000459.1_g000028
rosa_roxburghii	Rroxscaffold_5G00375710
rosa_rugosa	Rorug04G0276000 Rorug04G0276100 Rorug04G0276100 Rorug04G0276200
rosa_samantha	Rh4AG331300 Rh4BG339200 Rh4CG354300 Rh4DG334300
rosa_wichuraiana	Rw4G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	898
Acc36I	ACCTGC	2 cut(s)	572, 898
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	4 cut(s)	862, 878, 975, 982
AclWI	GGATC	4 cut(s)	15, 28, 950, 963
AcoI	YGGCCR	2 cut(s)	430, 879
AcsI	RAATTY	1 cut(s)	40
AcvI	CACGTG	1 cut(s)	646
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	2 cut(s)	504, 605
AfiI	CCNNNNNNNGG	4 cut(s)	211, 251, 252, 517
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	3 cut(s)	80, 194, 844
AjiI	CACGTC	1 cut(s)	739
AluBI	AGCT	2 cut(s)	113, 848
AluI	AGCT	2 cut(s)	113, 848
AlwI	GGATC	4 cut(s)	15, 28, 950, 963
AlwNI	CAGNNNCTG	1 cut(s)	266
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	5 cut(s)	370, 430, 434, 751, 879
ApeKI	GCWGC	5 cut(s)	113, 154, 683, 773, 965
ApoI	RAATTY	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	573, 827
AsuHPI	GGTGA	1 cut(s)	922
AvaII	GGWCC	2 cut(s)	573, 827
BaeGI	GKGCMC	1 cut(s)	645
BamHI	GGATCC	2 cut(s)	20, 955
BanII	GRGCYC	1 cut(s)	922
BbrPI	CACGTG	1 cut(s)	646
BbsI	GAAGAC	1 cut(s)	658
BbvI	GCAGC	5 cut(s)	100, 141, 670, 760, 977
BccI	CCATC	3 cut(s)	464, 816, 907
BceAI	ACGGC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	487
BfaI	CTAG	2 cut(s)	368, 705
BfuAI	ACCTGC	2 cut(s)	572, 898
BisI	GCNGC	6 cut(s)	114, 155, 684, 774, 879, 966
BlsI	GCNGC	6 cut(s)	115, 156, 685, 775, 880, 967
Bme18I	GGWCC	2 cut(s)	573, 827
BmgBI	CACGTC	1 cut(s)	739
BmgT120I	GGNCC	2 cut(s)	573, 827
BmiI	GGNNCC	3 cut(s)	22, 828, 957
BmrI	ACTGGG	2 cut(s)	92, 405
BmsI	GCATC	5 cut(s)	400, 449, 695, 733, 849
BmuI	ACTGGG	2 cut(s)	92, 405
BpiI	GAAGAC	1 cut(s)	658
BsaAI	YACGTR	2 cut(s)	332, 646
BsaJI	CCNNGG	1 cut(s)	511
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	4 cut(s)	211, 251, 252, 517
Bse118I	RCCGGY	2 cut(s)	432, 786
Bse1I	ACTGG	3 cut(s)	87, 400, 882
BseAI	TCCGGA	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	3 cut(s)	415, 827, 1009
BseLI	CCNNNNNNNGG	4 cut(s)	211, 251, 252, 517
BseMII	CTCAG	2 cut(s)	913, 935
BseNI	ACTGG	3 cut(s)	87, 400, 882
BseRI	GAGGAG	1 cut(s)	869
BseSI	GKGCMC	1 cut(s)	645
BseXI	GCAGC	5 cut(s)	100, 141, 670, 760, 977
BsgI	GTGCAG	3 cut(s)	99, 338, 926
BshFI	GGCC	5 cut(s)	372, 432, 436, 753, 881
BsiSI	CCGG	4 cut(s)	46, 433, 747, 787
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	4 cut(s)	211, 251, 252, 517
BsmFI	GGGAC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	898
BsnI	GGCC	5 cut(s)	372, 432, 436, 753, 881
Bsp1286I	GDGCHC	2 cut(s)	645, 922
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	5 cut(s)	20, 349, 487, 631, 955
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	4 cut(s)	862, 878, 975, 982
BspANI	GGCC	5 cut(s)	372, 432, 436, 753, 881
BspCNI	CTCAG	2 cut(s)	912, 934
BspEI	TCCGGA	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	22, 828, 957
BspMI	ACCTGC	2 cut(s)	572, 898
BspPI	GGATC	4 cut(s)	15, 28, 950, 963
BsrFI	RCCGGY	2 cut(s)	432, 786
BsrI	ACTGG	3 cut(s)	87, 400, 882
BssAI	RCCGGY	2 cut(s)	432, 786
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	5 cut(s)	20, 349, 487, 631, 955
BssT1I	CCWWGG	1 cut(s)	511
Bst4CI	ACNGT	3 cut(s)	206, 262, 507
BstBAI	YACGTR	2 cut(s)	332, 646
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	899, 921
BstDSI	CCRYGG	1 cut(s)	511
BstF5I	GGATG	3 cut(s)	415, 827, 1009
BstKTI	GATC	5 cut(s)	23, 352, 490, 634, 958
BstMBI	GATC	5 cut(s)	20, 349, 487, 631, 955
BstMWI	GCNNNNNNNGC	7 cut(s)	119, 142, 151, 369, 730, 974, 990
BstNSI	RCATGY	2 cut(s)	136, 878
BstSLI	GKGCMC	1 cut(s)	645
BstV1I	GCAGC	5 cut(s)	100, 141, 670, 760, 977
BstV2I	GAAGAC	1 cut(s)	658
BstX2I	RGATCY	2 cut(s)	20, 955
BstYI	RGATCY	2 cut(s)	20, 955
BsuRI	GGCC	5 cut(s)	372, 432, 436, 753, 881
BtgI	CCRYGG	1 cut(s)	511
BtgZI	GCGATG	1 cut(s)	472
BtrI	CACGTC	1 cut(s)	739
BtsCI	GGATG	3 cut(s)	415, 827, 1009
BtsIMutI	CAGTG	3 cut(s)	267, 497, 907
BveI	ACCTGC	2 cut(s)	572, 898
Cac8I	GCNNGC	1 cut(s)	434
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr10I	RCCGGY	2 cut(s)	432, 786
Cfr13I	GGNCC	2 cut(s)	573, 827
Csp6I	GTAC	2 cut(s)	503, 604
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	8 cut(s)	107, 133, 137, 247, 512, 563, 570, 875
CviQI	GTAC	2 cut(s)	503, 604
DdeI	CTNAG	2 cut(s)	899, 921
DpnI	GATC	5 cut(s)	22, 351, 489, 633, 957
DpnII	GATC	5 cut(s)	20, 349, 487, 631, 955
DraIII	CACNNNGTG	1 cut(s)	902
EaeI	YGGCCR	2 cut(s)	430, 879
Eco130I	CCWWGG	1 cut(s)	511
Eco147I	AGGCCT	2 cut(s)	372, 753
Eco24I	GRGCYC	1 cut(s)	922
Eco47I	GGWCC	2 cut(s)	573, 827
Eco72I	CACGTG	1 cut(s)	646
EcoO109I	RGGNCCY	1 cut(s)	827
EcoT14I	CCWWGG	1 cut(s)	511
EcoT22I	ATGCAT	2 cut(s)	138, 838
EcoT38I	GRGCYC	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	8 cut(s)	110, 136, 140, 250, 515, 566, 573, 878
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	8 cut(s)	106, 132, 136, 246, 511, 562, 569, 874
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	6 cut(s)	114, 155, 684, 774, 879, 966
FokI	GGATG	3 cut(s)	422, 834, 1016
FriOI	GRGCYC	1 cut(s)	922
FseI	GGCCGGCC	1 cut(s)	436
Fsp4HI	GCNGC	6 cut(s)	114, 155, 684, 774, 879, 966
FspBI	CTAG	2 cut(s)	368, 705
GluI	GCNGC	6 cut(s)	114, 155, 684, 774, 879, 966
HaeIII	GGCC	5 cut(s)	372, 432, 436, 753, 881
HapII	CCGG	4 cut(s)	46, 433, 747, 787
Hin1II	CATG	8 cut(s)	110, 136, 140, 250, 515, 566, 573, 878
HindIII	AAGCTT	1 cut(s)	846
HinfI	GANTC	3 cut(s)	13, 127, 1013
HpaII	CCGG	4 cut(s)	46, 433, 747, 787
HphI	GGTGA	1 cut(s)	922
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	3 cut(s)	60, 636, 924
Hpy188III	TCNNGA	3 cut(s)	46, 467, 705
Hpy8I	GTNNAC	1 cut(s)	503
Hpy99I	CGWCG	1 cut(s)	942
HpyAV	CCTTC	5 cut(s)	208, 530, 680, 810, 812
HpyCH4III	ACNGT	3 cut(s)	206, 262, 507
HpyCH4IV	ACGT	4 cut(s)	331, 645, 738, 940
HpyF10VI	GCNNNNNNNGC	7 cut(s)	119, 142, 151, 369, 730, 974, 990
HpyF3I	CTNAG	2 cut(s)	899, 921
HpySE526I	ACGT	4 cut(s)	331, 645, 738, 940
Hsp92II	CATG	8 cut(s)	110, 136, 140, 250, 515, 566, 573, 878
Kpn2I	TCCGGA	1 cut(s)	45
KroI	GCCGGC	1 cut(s)	432
KroNI	GCCGGC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	20, 349, 487, 631, 955
LmnI	GCTCC	2 cut(s)	110, 864
Lsp1109I	GCAGC	5 cut(s)	100, 141, 670, 760, 977
LweI	GCATC	5 cut(s)	400, 449, 695, 733, 849
MaeI	CTAG	2 cut(s)	368, 705
MaeII	ACGT	4 cut(s)	331, 645, 738, 940
MaeIII	GTNAC	4 cut(s)	403, 524, 782, 928
MalI	GATC	5 cut(s)	22, 351, 489, 633, 957
MboI	GATC	5 cut(s)	20, 349, 487, 631, 955
MboII	GAAGA	2 cut(s)	658, 787
MflI	RGATCY	2 cut(s)	20, 955
MhlI	GDGCHC	2 cut(s)	645, 922
MluCI	AATT	5 cut(s)	40, 75, 653, 791, 868
MnlI	CCTC	8 cut(s)	3, 166, 383, 447, 491, 684, 743, 847
Mph1103I	ATGCAT	2 cut(s)	138, 838
MroI	TCCGGA	1 cut(s)	45
MroNI	GCCGGC	1 cut(s)	432
MseI	TTAA	3 cut(s)	237, 621, 810
MslI	CAYNNNNRTG	1 cut(s)	135
MspI	CCGG	4 cut(s)	46, 433, 747, 787
Mva1269I	GAATGC	1 cut(s)	898
MwoI	GCNNNNNNNGC	7 cut(s)	119, 142, 151, 369, 730, 974, 990
NaeI	GCCGGC	1 cut(s)	434
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	5 cut(s)	20, 349, 487, 631, 955
NgoMIV	GCCGGC	1 cut(s)	432
NlaIII	CATG	8 cut(s)	110, 136, 140, 250, 515, 566, 573, 878
NlaIV	GGNNCC	3 cut(s)	22, 828, 957
NmuCI	GTSAC	3 cut(s)	403, 524, 928
NsiI	ATGCAT	2 cut(s)	138, 838
NspI	RCATGY	2 cut(s)	136, 878
PaqCI	CACCTGC	1 cut(s)	898
PceI	AGGCCT	2 cut(s)	372, 753
PctI	GAATGC	1 cut(s)	898
PdiI	GCCGGC	1 cut(s)	434
PfeI	GAWTC	3 cut(s)	13, 127, 1013
PkrI	GCNGC	6 cut(s)	115, 156, 685, 775, 880, 967
PmaCI	CACGTG	1 cut(s)	646
PmlI	CACGTG	1 cut(s)	646
Ppu21I	YACGTR	2 cut(s)	332, 646
PpuMI	RGGWCCY	1 cut(s)	827
Psp5II	RGGWCCY	1 cut(s)	827
PspCI	CACGTG	1 cut(s)	646
PspN4I	GGNNCC	3 cut(s)	22, 828, 957
PspPI	GGNCC	2 cut(s)	573, 827
PspPPI	RGGWCCY	1 cut(s)	827
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	20, 955
RigI	GGCCGGCC	1 cut(s)	436
RsaI	GTAC	2 cut(s)	504, 605
RsaNI	GTAC	2 cut(s)	503, 604
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	3 cut(s)	237, 621, 810
SatI	GCNGC	6 cut(s)	114, 155, 684, 774, 879, 966
Sau3AI	GATC	5 cut(s)	20, 349, 487, 631, 955
Sau96I	GGNCC	2 cut(s)	573, 827
SduI	GDGCHC	2 cut(s)	645, 922
SfaNI	GCATC	5 cut(s)	400, 449, 695, 733, 849
SinI	GGWCC	2 cut(s)	573, 827
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	5 cut(s)	40, 75, 653, 791, 868
SseBI	AGGCCT	2 cut(s)	372, 753
SsiI	CCGC	4 cut(s)	862, 878, 975, 982
SspMI	CTAG	2 cut(s)	368, 705
StuI	AGGCCT	2 cut(s)	372, 753
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	206, 262, 507
TaiI	ACGT	4 cut(s)	334, 648, 741, 943
TaqI	TCGA	1 cut(s)	439
TasI	AATT	5 cut(s)	40, 75, 653, 791, 868
TatI	WGTACW	2 cut(s)	502, 603
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	3 cut(s)	13, 127, 1013
Tru1I	TTAA	3 cut(s)	237, 621, 810
Tru9I	TTAA	3 cut(s)	237, 621, 810
TscAI	CASTG	3 cut(s)	267, 497, 907
TseFI	GTSAC	3 cut(s)	403, 524, 928
TseI	GCWGC	5 cut(s)	113, 154, 683, 773, 965
Tsp45I	GTSAC	3 cut(s)	403, 524, 928
TspDTI	ATGAA	5 cut(s)	175, 263, 558, 831, 1020
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	3 cut(s)	267, 497, 907
VpaK11BI	GGWCC	2 cut(s)	573, 827
XapI	RAATTY	1 cut(s)	40
XbaI	TCTAGA	1 cut(s)	704
XceI	RCATGY	2 cut(s)	136, 878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	450
XspI	CTAG	2 cut(s)	368, 705
Zsp2I	ATGCAT	2 cut(s)	138, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.