AT2G01220

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004757
Physical Location & Seq
Forward (+)
123023 .. 126611
3589 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01220.1

Sequence Viewer

Length: 1164 bp
ATGGGAGACGCTGCGATCCGTACCGTCGTCGAAGCCATTCACTCATCTCCGACGCAGGCCGTCGTCTATCTTTGCGGCGGTGCCTCTCTGGCTTTAGGTTGGTTGATGTCGGTTCCTGGAGCGTCGAACACGCTTCTCGAGTCCGTGGTTCCTTATTCGAGAGTATCTATGGTTCAATTACTCGGCAGGGTTCCGAGCCAACACTGTAGCCAAGCATTGGCCAAGGAGATGGCCTTGTTAGCCTACAATCGGGCGCTTAAGCTCTCTAAACCAGGATATCCGGTTCTCGGTGTCGGGTTTACGGGATCATTGGTAACTTCTCGTCCTAAGCGTGGAGATCACAGGTTCTTTTTGTCTATGAGAGCATCCGACCGGATTTTGGAATCTTCAGTCACTCTAACTAAGAACTTACGGAGCCGAGAAGAAGAAGATAAGGTGTCAAGCTGTGCACTGATCCAGGCTATGGCCAAGGCATGCCAAGTTTCTGGGACACTTGACTCTGGCTTGACCGAGTCTGAGGTGCCTTATGAGTCTGAAACCCACTTTACTGAAGAACAAGAACTAGAGCAGCTTATAAATGGGCACTTGTGCTGTAAGATTTATCCATTTTCTGGGGCACACGGGTCTGATGAAGACAGAAAGATTATACTACCTGGCTCTTTTAACCCATTACATGAAGGTCATCTCAAGCTGTTAGAAGTTGCTATGAGTGTTTGTGGGGGCGGCTACCCATGTTTTGAAATATCCGCAATAAATGCCGACAAACCACCGCTTACAATTGCACAGATTAAAGATCGTGTCAAGCAATTTGAAGTAGTTGGAAAGACGATAATAGTTTCAAATCAGCCATACTTCTACAAGAAAGCTGAACTCTTCCCAGGAAGCAGTTTTGTAATTGGCGCTGACACTGCAGCGAGGCTTGTCAATCCAAAGTACTATGAAGGAAGCATCAAAAGGATGTTGGAGATACTTGGTGATTGCAAACGGACAGGTTGCACTTTCCTTGTTGGTGGCCGCAATGTAGATGGTGTATTTAAGGTTCTTGAAGATGTTGATATTCCAGAGGAAATAATCGACATGTTTATTTCAATTCCAGCAGATATATTCCGGATGGATATATCCTCTACAGAGATAAGAAAAAAACAAGGGGGTGGTACGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

387

Amino Acids

42.15

Weight (kDa)

6.28

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 216 - 380 8.1e-09 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 575
AccB1I GGYRCC 2 cut(s) 80, 520
AccB7I CCANNNNNTGG 3 cut(s) 217, 463, 611
AccIII TCCGGA 1 cut(s) 1107
AciI CCGC 6 cut(s) 75, 78, 723, 747, 770, 1015
AclWI GGATC 3 cut(s) 10, 313, 448
AcoI YGGCCR 3 cut(s) 219, 465, 1012
AcuI CTGAAG 2 cut(s) 372, 570
AfaI GTAC 3 cut(s) 22, 935, 1156
AfiI CCNNNNNNNGG 7 cut(s) 217, 249, 287, 332, 379, 463, 611
AflII CTTAAG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 1077
AgsI TTSAA 6 cut(s) 176, 740, 812, 840, 1046, 1089
AjnI CCWGG 5 cut(s) 115, 271, 456, 652, 877
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 5 cut(s) 262, 444, 571, 691, 866
AluI AGCT 5 cut(s) 262, 444, 571, 691, 866
Alw21I GWGCWC 1 cut(s) 451
Alw44I GTGCAC 1 cut(s) 447
AlwI GGATC 3 cut(s) 10, 313, 448
Ama87I CYCGRG 1 cut(s) 137
Aor13HI TCCGGA 1 cut(s) 1107
AoxI GGCC 5 cut(s) 57, 219, 231, 465, 1012
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 3 cut(s) 11, 568, 911
Asp700I GAANNNNTTC 1 cut(s) 36
AspLEI GCGC 2 cut(s) 256, 902
AsuHPI GGTGA 1 cut(s) 986
AvaI CYCGRG 1 cut(s) 137
BaeGI GKGCMC 3 cut(s) 451, 585, 619
BalI TGGCCA 2 cut(s) 221, 467
BanI GGYRCC 2 cut(s) 80, 520
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 2 cut(s) 580, 923
BccI CCATC 3 cut(s) 223, 1019, 1105
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 5 cut(s) 117, 273, 458, 654, 879
BfaI CTAG 1 cut(s) 563
BfmI CTRYAG 3 cut(s) 205, 909, 1125
BfoI RGCGCY 2 cut(s) 257, 903
BfrI CTTAAG 1 cut(s) 257
BglI GCCNNNNNGGC 1 cut(s) 89
BisI GCNGC 6 cut(s) 12, 76, 569, 724, 912, 1015
BlsI GCNGC 6 cut(s) 13, 77, 570, 725, 913, 1016
BmcAI AGTACT 1 cut(s) 935
Bme1390I CCNGG 5 cut(s) 117, 273, 458, 654, 879
BmeT110I CYCGRG 1 cut(s) 137
BmiI GGNNCC 6 cut(s) 82, 114, 150, 192, 416, 522
BmrFI CCNGG 5 cut(s) 117, 273, 458, 654, 879
BmsI GCATC 2 cut(s) 374, 957
BpiI GAAGAC 1 cut(s) 639
BpmI CTGGAG 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 671
BsaJI CCNNGG 4 cut(s) 144, 222, 468, 877
BsaWI WCCGGW 3 cut(s) 280, 372, 1107
Bsc4I CCNNNNNNNGG 7 cut(s) 217, 249, 287, 332, 379, 463, 611
Bse3DI GCAATG 1 cut(s) 1024
BseAI TCCGGA 1 cut(s) 1107
BseBI CCWGG 5 cut(s) 117, 273, 458, 654, 879
BseDI CCNNGG 4 cut(s) 144, 222, 468, 877
BseGI GGATG 3 cut(s) 365, 963, 1116
BseLI CCNNNNNNNGG 7 cut(s) 217, 249, 287, 332, 379, 463, 611
BseMI GCAATG 1 cut(s) 1024
BseMII CTCAG 1 cut(s) 507
BseSI GKGCMC 3 cut(s) 451, 585, 619
BseXI GCAGC 2 cut(s) 580, 923
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 5 cut(s) 59, 221, 233, 467, 1014
BshNI GGYRCC 2 cut(s) 80, 520
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 3 cut(s) 281, 373, 1108
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 7 cut(s) 217, 249, 287, 332, 379, 463, 611
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 5 cut(s) 59, 221, 233, 467, 1014
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 3 cut(s) 451, 585, 619
Bsp13I TCCGGA 1 cut(s) 1107
Bsp143I GATC 5 cut(s) 15, 305, 337, 453, 793
BspACI CCGC 6 cut(s) 75, 78, 723, 747, 770, 1015
BspANI GGCC 5 cut(s) 59, 221, 233, 467, 1014
BspCNI CTCAG 1 cut(s) 508
BspEI TCCGGA 1 cut(s) 1107
BspLI GGNNCC 6 cut(s) 82, 114, 150, 192, 416, 522
BspMAI CTGCAG 1 cut(s) 913
BspPI GGATC 3 cut(s) 10, 313, 448
BspT107I GGYRCC 2 cut(s) 80, 520
BspTI CTTAAG 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 1024
BssECI CCNNGG 4 cut(s) 144, 222, 468, 877
BssMI GATC 5 cut(s) 15, 305, 337, 453, 793
BssT1I CCWWGG 2 cut(s) 222, 468
Bst2UI CCWGG 5 cut(s) 117, 273, 458, 654, 879
Bst4CI ACNGT 2 cut(s) 25, 206
Bst6I CTCTTC 1 cut(s) 878
BstAFI CTTAAG 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 755
BstC8I GCNNGC 2 cut(s) 57, 475
BstDEI CTNAG 3 cut(s) 327, 402, 516
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 3 cut(s) 365, 963, 1116
BstH2I RGCGCY 2 cut(s) 257, 903
BstHHI GCGC 2 cut(s) 256, 902
BstKTI GATC 5 cut(s) 18, 308, 340, 456, 796
BstMBI GATC 5 cut(s) 15, 305, 337, 453, 793
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 4 cut(s) 89, 239, 755, 908
BstNI CCWGG 5 cut(s) 117, 273, 458, 654, 879
BstNSI RCATGY 2 cut(s) 477, 1081
BstSCI CCNGG 5 cut(s) 115, 271, 456, 652, 877
BstSFI CTRYAG 3 cut(s) 205, 909, 1125
BstSLI GKGCMC 3 cut(s) 451, 585, 619
BstV1I GCAGC 2 cut(s) 580, 923
BstV2I GAAGAC 1 cut(s) 639
BstXI CCANNNNNNTGG 2 cut(s) 229, 485
BsuRI GGCC 5 cut(s) 59, 221, 233, 467, 1014
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 3 cut(s) 365, 963, 1116
BtsI GCAGTG 1 cut(s) 906
BtsIMutI CAGTG 3 cut(s) 202, 449, 906
Cac8I GCNNGC 2 cut(s) 57, 475
CfoI GCGC 2 cut(s) 256, 902
CseI GACGC 3 cut(s) 17, 61, 111
Csp6I GTAC 3 cut(s) 21, 934, 1155
CviAII CATG 4 cut(s) 474, 674, 732, 1078
CviQI GTAC 3 cut(s) 21, 934, 1155
DdeI CTNAG 3 cut(s) 327, 402, 516
DpnI GATC 5 cut(s) 17, 307, 339, 455, 795
DpnII GATC 5 cut(s) 15, 305, 337, 453, 793
EaeI YGGCCR 3 cut(s) 219, 465, 1012
Eam1104I CTCTTC 1 cut(s) 878
EarI CTCTTC 1 cut(s) 878
Eco130I CCWWGG 2 cut(s) 222, 468
Eco32I GATATC 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 372, 570
Eco88I CYCGRG 1 cut(s) 137
EcoRII CCWGG 5 cut(s) 115, 271, 456, 652, 877
EcoRV GATATC 1 cut(s) 278
EcoT14I CCWWGG 2 cut(s) 222, 468
ErhI CCWWGG 2 cut(s) 222, 468
FaeI CATG 4 cut(s) 477, 677, 735, 1081
FaqI GGGAC 1 cut(s) 502
FatI CATG 4 cut(s) 473, 673, 731, 1077
Fnu4HI GCNGC 6 cut(s) 12, 76, 569, 724, 912, 1015
FokI GGATG 3 cut(s) 352, 970, 1123
Fsp4HI GCNGC 6 cut(s) 12, 76, 569, 724, 912, 1015
FspBI CTAG 1 cut(s) 563
GlaI GCGC 2 cut(s) 255, 901
GluI GCNGC 6 cut(s) 12, 76, 569, 724, 912, 1015
GsuI CTGGAG 1 cut(s) 138
HaeII RGCGCY 2 cut(s) 257, 903
HaeIII GGCC 5 cut(s) 59, 221, 233, 467, 1014
HapII CCGG 3 cut(s) 281, 373, 1108
HgaI GACGC 3 cut(s) 17, 61, 111
HhaI GCGC 2 cut(s) 256, 902
Hin1II CATG 4 cut(s) 477, 677, 735, 1081
Hin6I GCGC 2 cut(s) 254, 900
HinP1I GCGC 2 cut(s) 254, 900
HinfI GANTC 5 cut(s) 140, 383, 497, 512, 530
HpaII CCGG 3 cut(s) 281, 373, 1108
HphI GGTGA 1 cut(s) 986
Hpy166II GTNNAC 2 cut(s) 300, 449
Hpy188I TCNGA 6 cut(s) 51, 195, 370, 517, 535, 628
Hpy188III TCNNGA 5 cut(s) 137, 159, 1043, 1061, 1108
Hpy8I GTNNAC 2 cut(s) 300, 449
Hpy99I CGWCG 5 cut(s) 29, 32, 55, 65, 127
HpyAV CCTTC 2 cut(s) 671, 935
HpyCH4III ACNGT 2 cut(s) 25, 206
HpyCH4V TGCA 5 cut(s) 449, 782, 911, 981, 996
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 239, 755, 908
HpyF3I CTNAG 3 cut(s) 327, 402, 516
Hsp92II CATG 4 cut(s) 477, 677, 735, 1081
HspAI GCGC 2 cut(s) 254, 900
Kpn2I TCCGGA 1 cut(s) 1107
Kzo9I GATC 5 cut(s) 15, 305, 337, 453, 793
LmnI GCTCC 2 cut(s) 119, 414
Lsp1109I GCAGC 2 cut(s) 580, 923
LweI GCATC 2 cut(s) 374, 957
MaeI CTAG 1 cut(s) 563
MaeIII GTNAC 2 cut(s) 313, 391
MalI GATC 5 cut(s) 17, 307, 339, 455, 795
MboI GATC 5 cut(s) 15, 305, 337, 453, 793
MboII GAAGA 8 cut(s) 378, 434, 437, 440, 563, 644, 865, 1058
MfeI CAATTG 1 cut(s) 777
MhlI GDGCHC 3 cut(s) 451, 585, 619
MlsI TGGCCA 2 cut(s) 221, 467
MluCI AATT 5 cut(s) 176, 777, 806, 894, 1089
MluNI TGGCCA 2 cut(s) 221, 467
MlyI GAGTC 4 cut(s) 149, 491, 521, 539
MmeI TCCRAC 4 cut(s) 74, 393, 799, 942
MnlI CCTC 5 cut(s) 94, 511, 909, 1057, 1132
Mox20I TGGCCA 2 cut(s) 221, 467
MroI TCCGGA 1 cut(s) 1107
MroXI GAANNNNTTC 1 cut(s) 36
MscI TGGCCA 2 cut(s) 221, 467
MseI TTAA 4 cut(s) 258, 663, 789, 1035
Msp20I TGGCCA 2 cut(s) 221, 467
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 3 cut(s) 281, 373, 1108
MspR9I CCNGG 5 cut(s) 117, 273, 458, 654, 879
MunI CAATTG 1 cut(s) 777
MvaI CCWGG 5 cut(s) 117, 273, 458, 654, 879
MwoI GCNNNNNNNGC 4 cut(s) 89, 239, 755, 908
NdeII GATC 5 cut(s) 15, 305, 337, 453, 793
NlaIII CATG 4 cut(s) 477, 677, 735, 1081
NlaIV GGNNCC 6 cut(s) 82, 114, 150, 192, 416, 522
NmeAIII GCCGAG 2 cut(s) 162, 443
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 2 cut(s) 477, 1081
PaeI GCATGC 1 cut(s) 477
PaeR7I CTCGAG 1 cut(s) 137
PciI ACATGT 1 cut(s) 1077
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 383
PflFI GACNNNGTC 1 cut(s) 511
PflMI CCANNNNNTGG 3 cut(s) 217, 463, 611
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 6 cut(s) 13, 77, 570, 725, 913, 1016
PleI GAGTC 4 cut(s) 148, 491, 520, 538
PpsI GAGTC 4 cut(s) 148, 491, 520, 538
PscI ACATGT 1 cut(s) 1077
PsiI TTATAA 1 cut(s) 575
Psp6I CCWGG 5 cut(s) 115, 271, 456, 652, 877
PspGI CCWGG 5 cut(s) 115, 271, 456, 652, 877
PspN4I GGNNCC 6 cut(s) 82, 114, 150, 192, 416, 522
PsrI GAACNNNNNNTAC 4 cut(s) 156, 188, 1023, 1055
PstI CTGCAG 1 cut(s) 913
PsyI GACNNNGTC 1 cut(s) 511
RsaI GTAC 3 cut(s) 22, 935, 1156
RsaNI GTAC 3 cut(s) 21, 934, 1155
SaqAI TTAA 4 cut(s) 258, 663, 789, 1035
SatI GCNGC 6 cut(s) 12, 76, 569, 724, 912, 1015
Sau3AI GATC 5 cut(s) 15, 305, 337, 453, 793
ScaI AGTACT 1 cut(s) 935
SchI GAGTC 4 cut(s) 149, 491, 521, 539
ScrFI CCNGG 5 cut(s) 117, 273, 458, 654, 879
SduI GDGCHC 3 cut(s) 451, 585, 619
SfaNI GCATC 2 cut(s) 374, 957
SfcI CTRYAG 3 cut(s) 205, 909, 1125
Sfr274I CTCGAG 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 137
SmlI CTYRAG 3 cut(s) 137, 257, 686
SmoI CTYRAG 3 cut(s) 137, 257, 686
SphI GCATGC 1 cut(s) 477
Sse9I AATT 5 cut(s) 176, 777, 806, 894, 1089
SsiI CCGC 6 cut(s) 75, 78, 723, 747, 770, 1015
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 5 cut(s) 115, 271, 456, 652, 877
StyI CCWWGG 2 cut(s) 222, 468
TaaI ACNGT 2 cut(s) 25, 206
TaqI TCGA 5 cut(s) 30, 125, 138, 158, 1074
TaqII GACCGA 1 cut(s) 524
TasI AATT 5 cut(s) 176, 777, 806, 894, 1089
TatI WGTACW 1 cut(s) 933
TauI GCSGC 3 cut(s) 78, 726, 1017
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 4 cut(s) 258, 663, 789, 1035
Tru9I TTAA 4 cut(s) 258, 663, 789, 1035
TscAI CASTG 3 cut(s) 209, 456, 913
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 3 cut(s) 11, 568, 911
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 3 cut(s) 645, 690, 954
TspGWI ACGGA 4 cut(s) 8, 133, 427, 1000
TspRI CASTG 3 cut(s) 209, 456, 913
Tth111I GACNNNGTC 1 cut(s) 511
Van91I CCANNNNNTGG 3 cut(s) 217, 463, 611
Vha464I CTTAAG 1 cut(s) 257
VneI GTGCAC 1 cut(s) 447
XceI RCATGY 2 cut(s) 477, 1081
XhoI CTCGAG 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 1 cut(s) 563
ZrmI AGTACT 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.