FvH4_4g26720

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004757
Physical Location & Seq
Forward (+)
28009444 .. 28014790
5347 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26720.t1

Sequence Viewer

Length: 1182 bp
ATGACAGAGACTTGTTGTACGAGTGCGATGAACATTGGAATCCGAGCACTAGTCGAAGCCATCCACTCCACTCCTACTCAGTCCGTTCTCTATCTCTCCGGCGGCGCCTCTCAGGCGGTGGCGTGGCTGCTCTCCGTTCCCGGAGCCTCAAGTACAGTCCTCGAAGCTGTGGTGCCTTATTCTCGAATGTCGATGATCCAATTACTCGGCAAGATTCCGGACAATTTTTGCAGCCAGCACAATGCTGAAGACATGGCGCTGTTGGCTTACAATCGCGCTCTCAAGCTCTCCTCACCTGGTTCCCCAGTTGTTGGTGTGGGTTTCACTGGTTCTTTGGCTGCCTCGCGTCCGAAGCTCGGGGACCACAGGTTTTATTTGTCAACGAGGACATCTGACAGACTGTCAGTATCAACAGTGACCCTTTCCAAGGGTTCACGGAATCGAGAGGAAGAAGATATGGTTGCAAGTCATATCGTGCTCAAGGCAATTGCAAATGCGTGCAAAGTTCCTGGAACATTTGTTTCAAGTCTCACTGAATCTGAAGTGCCTGAGGAATGTGAAAAGCAGTTCAGCGAAGATGAAGAATTAGAGCAACTTATAAATGGGCAAATATGCTTCAAGGTTTATCCTTTTTCAAGTGAGCCATCTGTGCCAATTCCAGAAAGAAGGATAATACTCTCTGGTTCTTTTAATCCATTACATGAAGGTCACTTCAAGTTATTGGAGGTTGCTACCAGGATCTGTGGCAACGGCTACCCATGCTTTGAACTATCTGCAATCAATGCTGACAAACCTCCACTTTCGATATCACAAATCAAAGATCGTGTCAAGCAGTTTGAAATAGTTGGAAAAACGGTGATTATATCCAATCAGCCATATTTTTATAAGAAAGCTGAACTTTTCCCAGGCAGTGCATTTGTGATTGGTGCTGACACAGCAGCGAGGCTGATTAATCCCAAATACTATGACGGGGACTATAGAAAGATGCTAGATATACTTCTTGGATGCAAGAAAACAGGGTCCACTTTTCTTGTTGGCGGCCGTAATGTAGATGGTGTTTTCAAGGTGCTGGAAGATTTTGAAATTCCAGAAGAGCTACGAGATATGTTCATTTCGATTCCACCAGAGGAGTTCCGGATGGATATATCCTCCACCGAAATCAGGAAAAAACTTGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

394

Amino Acids

43.15

Weight (kDa)

5.97

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 226 - 389 1.2e-08 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 599, 885
AccB1I GGYRCC 2 cut(s) 104, 172
AccB7I CCANNNNNTGG 1 cut(s) 311
AccII CGCG 2 cut(s) 276, 346
AccIII TCCGGA 2 cut(s) 217, 1134
AciI CCGC 3 cut(s) 102, 116, 1038
AclWI GGATC 2 cut(s) 190, 746
AcoI YGGCCR 1 cut(s) 1039
AcsI RAATTY 1 cut(s) 1083
AcuI CTGAAG 2 cut(s) 267, 561
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 2 cut(s) 19, 154
AfiI CCNNNNNNNGG 4 cut(s) 311, 356, 427, 1161
AgsI TTSAA 8 cut(s) 525, 619, 636, 715, 767, 839, 1063, 1082
AhdI GACNNNNNGTC 1 cut(s) 400
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 4 cut(s) 295, 508, 734, 904
AluBI AGCT 5 cut(s) 167, 286, 355, 893, 1096
AluI AGCT 5 cut(s) 167, 286, 355, 893, 1096
Alw21I GWGCWC 2 cut(s) 49, 480
Alw26I GTCTC 2 cut(s) 2, 533
AlwI GGATC 2 cut(s) 190, 746
AlwNI CAGNNNCTG 1 cut(s) 741
Ama87I CYCGRG 1 cut(s) 356
Aor13HI TCCGGA 2 cut(s) 217, 1134
AoxI GGCC 1 cut(s) 1039
ApeKI GCWGC 4 cut(s) 127, 231, 338, 938
ApoI RAATTY 1 cut(s) 1083
ArsI GACNNNNNNTTYG 2 cut(s) 810, 842
AseI ATTAAT 1 cut(s) 951
AspLEI GCGC 3 cut(s) 107, 259, 278
AspS9I GGNCC 2 cut(s) 361, 1020
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 2 cut(s) 285, 868
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 2 cut(s) 361, 1020
AxyI CCTNAGG 1 cut(s) 549
BanI GGYRCC 2 cut(s) 104, 172
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 49, 480
BbvI GCAGC 4 cut(s) 114, 243, 325, 950
BccI CCATC 4 cut(s) 68, 652, 1046, 1132
BceAI ACGGC 2 cut(s) 766, 1026
BciT130I CCWGG 4 cut(s) 297, 510, 736, 906
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 2 cut(s) 2, 533
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 989
BfmI CTRYAG 1 cut(s) 976
BfoI RGCGCY 2 cut(s) 108, 260
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 6 cut(s) 103, 128, 232, 339, 939, 1039
BlsI GCNGC 6 cut(s) 104, 129, 233, 340, 940, 1040
Bme1390I CCNGG 5 cut(s) 141, 297, 510, 736, 906
Bme18I GGWCC 2 cut(s) 361, 1020
BmeRI GACNNNNNGTC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 2 cut(s) 361, 1020
BmiI GGNNCC 6 cut(s) 106, 145, 174, 301, 362, 1021
BmrFI CCNGG 5 cut(s) 141, 297, 510, 736, 906
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 2 cut(s) 975, 995
BmuI ACTGGG 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 255
BpuEI CTTGAG 3 cut(s) 133, 266, 464
BpuMI CCSGG 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 426, 904
BsaWI WCCGGW 2 cut(s) 217, 1134
Bsc4I CCNNNNNNNGG 4 cut(s) 311, 356, 427, 1161
Bse1I ACTGG 2 cut(s) 305, 331
Bse21I CCTNAGG 1 cut(s) 549
BseAI TCCGGA 2 cut(s) 217, 1134
BseBI CCWGG 4 cut(s) 297, 510, 736, 906
BseDI CCNNGG 2 cut(s) 426, 904
BseGI GGATG 3 cut(s) 60, 1010, 1143
BseLI CCNNNNNNNGG 4 cut(s) 311, 356, 427, 1161
BseMII CTCAG 3 cut(s) 92, 125, 540
BseNI ACTGG 2 cut(s) 305, 331
BseRI GAGGAG 2 cut(s) 280, 1142
BseX3I CGGCCG 1 cut(s) 1039
BseXI GCAGC 4 cut(s) 114, 243, 325, 950
Bsh1236I CGCG 2 cut(s) 276, 346
Bsh1285I CGRYCG 1 cut(s) 1042
BshFI GGCC 1 cut(s) 1041
BshNI GGYRCC 2 cut(s) 104, 172
BsiEI CGRYCG 1 cut(s) 1042
BsiHKAI GWGCWC 2 cut(s) 49, 480
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 4 cut(s) 99, 141, 218, 1135
BslFI GGGAC 2 cut(s) 374, 986
BslI CCNNNNNNNGG 4 cut(s) 311, 356, 427, 1161
BsmAI GTCTC 2 cut(s) 2, 533
BsmFI GGGAC 2 cut(s) 374, 986
BsnI GGCC 1 cut(s) 1041
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 49, 480
Bsp13I TCCGGA 2 cut(s) 217, 1134
Bsp143I GATC 3 cut(s) 195, 738, 820
BspACI CCGC 3 cut(s) 102, 116, 1038
BspANI GGCC 1 cut(s) 1041
BspCNI CTCAG 3 cut(s) 91, 124, 541
BspEI TCCGGA 2 cut(s) 217, 1134
BspFNI CGCG 2 cut(s) 276, 346
BspLI GGNNCC 6 cut(s) 106, 145, 174, 301, 362, 1021
BspPI GGATC 2 cut(s) 190, 746
BspQI GCTCTTC 1 cut(s) 1086
BspT107I GGYRCC 2 cut(s) 104, 172
BsrI ACTGG 2 cut(s) 305, 331
BssECI CCNNGG 2 cut(s) 426, 904
BssMI GATC 3 cut(s) 195, 738, 820
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 4 cut(s) 297, 510, 736, 906
Bst4CI ACNGT 4 cut(s) 157, 402, 415, 856
Bst6I CTCTTC 1 cut(s) 1086
BstACI GRCGYC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 782
BstC8I GCNNGC 2 cut(s) 236, 499
BstDEI CTNAG 3 cut(s) 78, 111, 549
BstENI CCTNNNNNAGG 1 cut(s) 425
BstF5I GGATG 3 cut(s) 60, 1010, 1143
BstFNI CGCG 2 cut(s) 276, 346
BstH2I RGCGCY 2 cut(s) 108, 260
BstHHI GCGC 3 cut(s) 107, 259, 278
BstKTI GATC 3 cut(s) 198, 741, 823
BstMAI GTCTC 2 cut(s) 2, 533
BstMBI GATC 3 cut(s) 195, 738, 820
BstMCI CGRYCG 1 cut(s) 1042
BstMWI GCNNNNNNNGC 7 cut(s) 113, 263, 352, 649, 759, 782, 935
BstNI CCWGG 4 cut(s) 297, 510, 736, 906
BstSCI CCNGG 5 cut(s) 139, 295, 508, 734, 904
BstSFI CTRYAG 1 cut(s) 976
BstUI CGCG 2 cut(s) 276, 346
BstV1I GCAGC 4 cut(s) 114, 243, 325, 950
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 738
BstYI RGATCY 1 cut(s) 738
BstZI CGGCCG 1 cut(s) 1039
Bsu36I CCTNAGG 1 cut(s) 549
BsuRI GGCC 1 cut(s) 1041
BtgZI GCGATG 1 cut(s) 41
BtsCI GGATG 3 cut(s) 60, 1010, 1143
BtsI GCAGTG 1 cut(s) 916
BtsIMutI CAGTG 4 cut(s) 324, 420, 531, 916
Cac8I GCNNGC 2 cut(s) 236, 499
CaiI CAGNNNCTG 1 cut(s) 741
CfoI GCGC 3 cut(s) 107, 259, 278
Cfr13I GGNCC 2 cut(s) 361, 1020
CseI GACGC 1 cut(s) 335
CsiI ACCWGGT 1 cut(s) 295
Csp6I GTAC 2 cut(s) 18, 153
CspCI CAANNNNNGTGG 2 cut(s) 1012, 1047
CviAII CATG 3 cut(s) 253, 701, 759
CviQI GTAC 2 cut(s) 18, 153
DdeI CTNAG 3 cut(s) 78, 111, 549
DinI GGCGCC 1 cut(s) 106
DpnI GATC 3 cut(s) 197, 740, 822
DpnII GATC 3 cut(s) 195, 738, 820
DriI GACNNNNNGTC 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 1039
EagI CGGCCG 1 cut(s) 1039
Eam1104I CTCTTC 1 cut(s) 1086
Eam1105I GACNNNNNGTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 1086
EclXI CGGCCG 1 cut(s) 1039
Eco130I CCWWGG 1 cut(s) 426
Eco32I GATATC 1 cut(s) 807
Eco47I GGWCC 2 cut(s) 361, 1020
Eco52I CGGCCG 1 cut(s) 1039
Eco57I CTGAAG 2 cut(s) 267, 561
Eco81I CCTNAGG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 356
EcoNI CCTNNNNNAGG 1 cut(s) 425
EcoRII CCWGG 4 cut(s) 295, 508, 734, 904
EcoRV GATATC 1 cut(s) 807
EcoT14I CCWWGG 1 cut(s) 426
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 3 cut(s) 256, 704, 762
FalI AAGNNNNNCTT 2 cut(s) 882, 914
FaqI GGGAC 2 cut(s) 374, 986
FatI CATG 3 cut(s) 252, 700, 758
Fnu4HI GCNGC 6 cut(s) 103, 128, 232, 339, 939, 1039
FokI GGATG 3 cut(s) 47, 1017, 1150
Fsp4HI GCNGC 6 cut(s) 103, 128, 232, 339, 939, 1039
FspBI CTAG 2 cut(s) 50, 989
GlaI GCGC 3 cut(s) 106, 258, 277
GluI GCNGC 6 cut(s) 103, 128, 232, 339, 939, 1039
HaeII RGCGCY 2 cut(s) 108, 260
HaeIII GGCC 1 cut(s) 1041
HapII CCGG 4 cut(s) 99, 141, 218, 1135
HgaI GACGC 1 cut(s) 335
HhaI GCGC 3 cut(s) 107, 259, 278
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 3 cut(s) 256, 704, 762
Hin6I GCGC 3 cut(s) 105, 257, 276
HinP1I GCGC 3 cut(s) 105, 257, 276
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 5 cut(s) 39, 214, 439, 536, 1117
HpaII CCGG 4 cut(s) 99, 141, 218, 1135
HphI GGTGA 2 cut(s) 285, 868
Hpy166II GTNNAC 3 cut(s) 381, 434, 1023
Hpy188I TCNGA 4 cut(s) 44, 351, 394, 541
Hpy188III TCNNGA 7 cut(s) 183, 218, 443, 659, 1088, 1135, 1162
Hpy8I GTNNAC 3 cut(s) 381, 434, 1023
HpyAV CCTTC 2 cut(s) 660, 698
HpyCH4III ACNGT 4 cut(s) 157, 402, 415, 856
HpyCH4V TGCA 8 cut(s) 231, 464, 491, 501, 776, 914, 1008, 1175
HpyF10VI GCNNNNNNNGC 7 cut(s) 113, 263, 352, 649, 759, 782, 935
HpyF3I CTNAG 3 cut(s) 78, 111, 549
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 3 cut(s) 256, 704, 762
HspAI GCGC 3 cut(s) 105, 257, 276
KasI GGCGCC 1 cut(s) 104
Kpn2I TCCGGA 2 cut(s) 217, 1134
Kzo9I GATC 3 cut(s) 195, 738, 820
LguI GCTCTTC 1 cut(s) 1086
LmnI GCTCC 1 cut(s) 143
Lsp1109I GCAGC 4 cut(s) 114, 243, 325, 950
LweI GCATC 2 cut(s) 975, 995
MabI ACCWGGT 1 cut(s) 295
MaeI CTAG 2 cut(s) 50, 989
MaeIII GTNAC 2 cut(s) 415, 707
MalI GATC 3 cut(s) 197, 740, 822
MboI GATC 3 cut(s) 195, 738, 820
MboII GAAGA 7 cut(s) 260, 461, 464, 587, 593, 1085, 1103
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 738
MhlI GDGCHC 2 cut(s) 49, 480
MluCI AATT 6 cut(s) 200, 223, 486, 584, 654, 1083
Mly113I GGCGCC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 826
MroI TCCGGA 2 cut(s) 217, 1134
MseI TTAA 2 cut(s) 690, 951
MspI CCGG 4 cut(s) 99, 141, 218, 1135
MspR9I CCNGG 5 cut(s) 141, 297, 510, 736, 906
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 4 cut(s) 297, 510, 736, 906
MvnI CGCG 2 cut(s) 276, 346
MwoI GCNNNNNNNGC 7 cut(s) 113, 263, 352, 649, 759, 782, 935
NarI GGCGCC 1 cut(s) 105
NciI CCSGG 1 cut(s) 141
NdeII GATC 3 cut(s) 195, 738, 820
NlaIII CATG 3 cut(s) 256, 704, 762
NlaIV GGNNCC 6 cut(s) 106, 145, 174, 301, 362, 1021
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 2 cut(s) 415, 707
PciSI GCTCTTC 1 cut(s) 1086
PfeI GAWTC 5 cut(s) 39, 214, 439, 536, 1117
PflMI CCANNNNNTGG 1 cut(s) 311
PfoI TCCNGGA 2 cut(s) 139, 508
PkrI GCNGC 6 cut(s) 104, 129, 233, 340, 940, 1040
PluTI GGCGCC 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 951
PsiI TTATAA 2 cut(s) 599, 885
Psp6I CCWGG 4 cut(s) 295, 508, 734, 904
PspGI CCWGG 4 cut(s) 295, 508, 734, 904
PspN4I GGNNCC 6 cut(s) 106, 145, 174, 301, 362, 1021
PspPI GGNCC 2 cut(s) 361, 1020
PstNI CAGNNNCTG 1 cut(s) 741
PsuI RGATCY 1 cut(s) 738
RsaI GTAC 2 cut(s) 19, 154
RsaNI GTAC 2 cut(s) 18, 153
SapI GCTCTTC 1 cut(s) 1086
SaqAI TTAA 2 cut(s) 690, 951
SatI GCNGC 6 cut(s) 103, 128, 232, 339, 939, 1039
Sau3AI GATC 3 cut(s) 195, 738, 820
Sau96I GGNCC 2 cut(s) 361, 1020
ScrFI CCNGG 5 cut(s) 141, 297, 510, 736, 906
SduI GDGCHC 2 cut(s) 49, 480
SexAI ACCWGGT 1 cut(s) 295
SfaNI GCATC 2 cut(s) 975, 995
SfcI CTRYAG 1 cut(s) 976
SfoI GGCGCC 1 cut(s) 106
SinI GGWCC 2 cut(s) 361, 1020
SmlI CTYRAG 3 cut(s) 148, 281, 479
SmoI CTYRAG 3 cut(s) 148, 281, 479
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 6 cut(s) 200, 223, 486, 584, 654, 1083
SsiI CCGC 3 cut(s) 102, 116, 1038
SspDI GGCGCC 1 cut(s) 104
SspMI CTAG 2 cut(s) 50, 989
StyD4I CCNGG 5 cut(s) 139, 295, 508, 734, 904
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 4 cut(s) 157, 402, 415, 856
TaqI TCGA 7 cut(s) 54, 162, 184, 191, 442, 803, 1115
TasI AATT 6 cut(s) 200, 223, 486, 584, 654, 1083
TatI WGTACW 1 cut(s) 152
TauI GCSGC 2 cut(s) 105, 1041
TfiI GAWTC 5 cut(s) 39, 214, 439, 536, 1117
Tru1I TTAA 2 cut(s) 690, 951
Tru9I TTAA 2 cut(s) 690, 951
TscAI CASTG 4 cut(s) 331, 420, 538, 916
TseFI GTSAC 2 cut(s) 415, 707
TseI GCWGC 4 cut(s) 127, 231, 338, 938
Tsp45I GTSAC 2 cut(s) 415, 707
TspDTI ATGAA 4 cut(s) 44, 594, 717, 1099
TspGWI ACGGA 3 cut(s) 73, 124, 451
TspRI CASTG 4 cut(s) 331, 420, 538, 916
Van91I CCANNNNNTGG 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 361, 1020
VspI ATTAAT 1 cut(s) 951
XagI CCTNNNNNAGG 1 cut(s) 425
XapI RAATTY 1 cut(s) 1083
XspI CTAG 2 cut(s) 50, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.