Rorug04G0276500

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004757
Physical Location & Seq
Forward (+)
44874728 .. 44875695
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0276500.1

Sequence Viewer

Length: 474 bp
ATGAGTGAATCAGCTGCTGATCCCAACACCAAGCCTTCATCATCAGCAATGAAGCTATTCGGTTTTTCACTTACGGCCCATCCCTGTGAAAATGGAGTGGCGGTAACGAAGAGCAAGAAGTTTGAGTGTCACTACTGCGGTCGAGAGTTTGAGAATTCTCAAGCATTAGGTGGCCATCAAAACGCACACAAAAGAGAAAGGAAGGTAGCAAGGATGGCCATGTTGGAGAACGAGGAGGATTATCAACATCAGCCATACCAACACCTTCCTCCTCCTCAACGTAATCAACTGTTTCCAACAGGTGTACGGTACTCCATTATCAACCCTATATTCGTTACGACTTCTGGCCAGTCCACAACCACAACCATCAATTATATTGGCAACGGTGGTGCTAATGTTGGTACAGGTTCGGTACTGCTCCCTAAAGATTATGAAGGAAATGATGAGGTCATTGATCTGCGTTTGAGACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

157

Amino Acids

17.39

Weight (kDa)

7.01

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 41 - 65 4.4e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 101, 138
AclWI GGATC 1 cut(s) 14
AcoI YGGCCR 3 cut(s) 172, 216, 346
AcsI RAATTY 1 cut(s) 154
AfaI GTAC 4 cut(s) 306, 311, 403, 414
AluBI AGCT 2 cut(s) 14, 55
AluI AGCT 2 cut(s) 14, 55
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 4 cut(s) 75, 172, 216, 346
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 76
BalI TGGCCA 3 cut(s) 174, 218, 348
BccI CCATC 4 cut(s) 87, 183, 208, 374
BceAI ACGGC 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 460
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 54
BseGI GGATG 2 cut(s) 79, 219
BseMI GCAATG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 3 cut(s) 248, 261, 264
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 4 cut(s) 77, 174, 218, 348
BsiEI CGRYCG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 460
BsnI GGCC 4 cut(s) 77, 174, 218, 348
Bsp143I GATC 2 cut(s) 19, 454
BspACI CCGC 2 cut(s) 101, 138
BspANI GGCC 4 cut(s) 77, 174, 218, 348
BspPI GGATC 1 cut(s) 14
BspQI GCTCTTC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 349
BssMI GATC 2 cut(s) 19, 454
Bst4CI ACNGT 3 cut(s) 291, 309, 386
Bst6I CTCTTC 1 cut(s) 104
BstF5I GGATG 2 cut(s) 79, 219
BstKTI GATC 2 cut(s) 22, 457
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 2 cut(s) 19, 454
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 215
BsuRI GGCC 4 cut(s) 77, 174, 218, 348
BtsCI GGATG 2 cut(s) 79, 219
CaiI CAGNNNCTG 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 4 cut(s) 305, 310, 402, 413
CviAII CATG 1 cut(s) 220
CviJI RGCY 8 cut(s) 14, 34, 55, 77, 174, 218, 253, 348
CviKI_1 RGCY 8 cut(s) 14, 34, 55, 77, 174, 218, 253, 348
CviQI GTAC 4 cut(s) 305, 310, 402, 413
DpnI GATC 2 cut(s) 21, 456
DpnII GATC 2 cut(s) 19, 454
EaeI YGGCCR 3 cut(s) 172, 216, 346
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 154
FaeI CATG 1 cut(s) 223
FaiI YATR 5 cut(s) 221, 256, 329, 375, 432
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 2 cut(s) 66, 226
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 4 cut(s) 77, 174, 218, 348
Hin1II CATG 1 cut(s) 223
HinfI GANTC 1 cut(s) 8
Hpy166II GTNNAC 2 cut(s) 305, 354
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 2 cut(s) 305, 354
HpyAV CCTTC 4 cut(s) 45, 196, 275, 428
HpyCH4III ACNGT 3 cut(s) 291, 309, 386
HpyCH4IV ACGT 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 2 cut(s) 19, 454
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 1 cut(s) 423
LpnPI CCDG 5 cut(s) 97, 285, 330, 362, 390
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 3 cut(s) 103, 128, 334
MalI GATC 2 cut(s) 21, 456
MboI GATC 2 cut(s) 19, 454
MboII GAAGA 1 cut(s) 121
MlsI TGGCCA 3 cut(s) 174, 218, 348
MluCI AATT 2 cut(s) 154, 370
MluNI TGGCCA 3 cut(s) 174, 218, 348
MmeI TCCRAC 2 cut(s) 204, 320
MnlI CCTC 6 cut(s) 226, 229, 279, 282, 285, 439
Mox20I TGGCCA 3 cut(s) 174, 218, 348
MroXI GAANNNNTTC 1 cut(s) 56
MscI TGGCCA 3 cut(s) 174, 218, 348
MseI TTAA 1 cut(s) 472
MslI CAYNNNNRTG 1 cut(s) 84
Msp20I TGGCCA 3 cut(s) 174, 218, 348
MspA1I CMGCKG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 2 cut(s) 19, 454
NlaIII CATG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 4 cut(s) 306, 311, 403, 414
RsaNI GTAC 4 cut(s) 305, 310, 402, 413
RseI CAYNNNNRTG 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 472
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 19, 454
Sau96I GGNCC 1 cut(s) 76
SetI ASST 9 cut(s) 16, 57, 172, 207, 267, 283, 304, 409, 450
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
Sse9I AATT 2 cut(s) 154, 370
SsiI CCGC 2 cut(s) 101, 138
TaaI ACNGT 3 cut(s) 291, 309, 386
TaiI ACGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 142
TasI AATT 2 cut(s) 154, 370
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 472
Tru9I TTAA 1 cut(s) 472
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 27, 65, 447
XapI RAATTY 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.