AT3G27610

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004757
Physical Location & Seq
Reverse (-)
10225486 .. 10228264
2779 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27610.8

Sequence Viewer

Length: 1170 bp
ATGGCGGAGTCTGCGATCCGAACCATCGTCGAATCAATTCACTCATCGCCGACGCAAGCCGTCGTGTATCTCTCCGGCGGTGCCTCTCAGTCTTTAGGTTGGTTAATGTCAGTTCCTGGAGCTTCGAACACACTTCTCGAAGCCGTGGTTCCGTATTCCATGATCTCTATGGTTCAATTACTCGGCAGGGTTCCGAACCAACACTGTAGCCAATCAATGGCGAATGAAATGGCTTTGTTAGCTTATAATCGTGCTCTTAAGCTTTCTAAGCCAGGATGTGCGGTTCTTGGTGTTGGTTTTACTGGAACGTTAGCAACTTCTCGTCCAAAGCGTGGGGATCATAGGTTCTTTTTGTCGATAAGAGCTTCCAACCGGATATGGGAAACTTCAGTTACTCTAACAAAGGGAAAACGAAGCCGAGAGGAAGAAGATAAAGTGGCAAGCTCTGTACTGATTCAGGCTATGGCTAAGGCATGCCAAGTTTCTGAGACACTTGACTCTGGCTTGACTGATTCTGAGGTGCTTAATGAGTCTGTAATCCAGTTTAGTGAAGAAGAAGAACTAGAACAGCTTATAGATGGACAAATATGCTCTAAGATCTATCCATTTTCTAAAGAATCATACGGGTCGGATAAAGATAGAAAGATTATACTGCCTGGTTCTTTTAACCCATTACATGACGGTGATCTCAAGCTGTTGGAAGCTGCTATGAGTGTTTCTGAGGAAGGAGGGTATCCATGTTTTGAAATATCTGCACTGAATGCAGACAAACCATCGCTTACAGTTACAGAGATTAAAGATCGTGTCAAACAATTTGAAGTACTTGAAAAGACGGTAATAGTTTCAAATCAGCCTTTCTTCTACAAGAAAGCTGAACTCTTCCCAGGAAGCAGTTTTGTAATTGGTGCTGATACTGCAGCAAGGATTGTTAATCCAAAGTACTATGAAGGAAGCCACAAAAGGATGTTGGAGGTACTAGGTGATTGCAAACGAACAGGTTGCAAGTTCCTTGTTGGTGGCCGTAATGTAGATAGTGTATTCAAGGTTCTTGACGATCATGAGATTCCAAAGGAAATAAGTACAATGTTTACCTCAATTTCAGCAGATACATTCCGTATGGATATATCCTCTACAGAGCTAAGAAAGAACCAAGGAGGTGTTATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

389

Amino Acids

42.61

Weight (kDa)

5.82

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 106 - 271 6.4e-06 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 80
AccB7I CCANNNNNTGG 2 cut(s) 217, 332
AciI CCGC 3 cut(s) 5, 78, 281
AclI AACGTT 1 cut(s) 308
AclWI GGATC 2 cut(s) 10, 345
AcoI YGGCCR 1 cut(s) 1018
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 5 cut(s) 450, 822, 941, 975, 1081
AfiI CCNNNNNNNGG 3 cut(s) 217, 332, 379
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 6 cut(s) 176, 746, 818, 827, 846, 1042
AjnI CCWGG 4 cut(s) 115, 271, 655, 883
AloI GAACNNNNNNTCC 4 cut(s) 267, 299, 329, 361
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 2 cut(s) 10, 345
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 1018
ApeKI GCWGC 2 cut(s) 704, 917
Asp700I GAANNNNTTC 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 695, 992
AsuII TTCGAA 1 cut(s) 125
BanI GGYRCC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 691, 929
BccI CCATC 3 cut(s) 32, 572, 781
BceAI ACGGC 3 cut(s) 44, 128, 1005
BcgI CGANNNNNNTGC 2 cut(s) 981, 1015
BciT130I CCWGG 4 cut(s) 117, 273, 657, 885
BciVI GTATCC 1 cut(s) 744
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 2 cut(s) 563, 977
BfmI CTRYAG 3 cut(s) 205, 915, 1131
BfrI CTTAAG 1 cut(s) 257
BfuI GTATCC 1 cut(s) 744
BglII AGATCT 1 cut(s) 597
BisI GCNGC 2 cut(s) 705, 918
BlsI GCNGC 2 cut(s) 706, 919
BmcAI AGTACT 2 cut(s) 822, 941
Bme1390I CCNGG 4 cut(s) 117, 273, 657, 885
BmiI GGNNCC 3 cut(s) 82, 150, 192
BmrFI CCNGG 4 cut(s) 117, 273, 657, 885
BpmI CTGGAG 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 674
BsaJI CCNNGG 3 cut(s) 144, 883, 1150
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 332, 379
Bse1I ACTGG 2 cut(s) 307, 541
BseBI CCWGG 4 cut(s) 117, 273, 657, 885
BseDI CCNNGG 3 cut(s) 144, 883, 1150
BseGI GGATG 2 cut(s) 281, 969
BseLI CCNNNNNNNGG 3 cut(s) 217, 332, 379
BseMII CTCAG 4 cut(s) 101, 477, 507, 711
BseNI ACTGG 2 cut(s) 307, 541
BseXI GCAGC 2 cut(s) 691, 929
BsgI GTGCAG 1 cut(s) 738
BshFI GGCC 1 cut(s) 1020
BshNI GGYRCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 2 cut(s) 75, 373
BslI CCNNNNNNNGG 3 cut(s) 217, 332, 379
BsmAI GTCTC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 1 cut(s) 1020
Bsp119I TTCGAA 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 7 cut(s) 15, 162, 337, 597, 685, 799, 1054
BspACI CCGC 3 cut(s) 5, 78, 281
BspANI GGCC 1 cut(s) 1020
BspCNI CTCAG 4 cut(s) 100, 478, 508, 712
BspHI TCATGA 1 cut(s) 1057
BspLI GGNNCC 3 cut(s) 82, 150, 192
BspMAI CTGCAG 1 cut(s) 919
BspPI GGATC 2 cut(s) 10, 345
BspT104I TTCGAA 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 257
BsrI ACTGG 2 cut(s) 307, 541
BssECI CCNNGG 3 cut(s) 144, 883, 1150
BssMI GATC 7 cut(s) 15, 162, 337, 597, 685, 799, 1054
BssT1I CCWWGG 1 cut(s) 1150
Bst2UI CCWGG 4 cut(s) 117, 273, 657, 885
Bst4CI ACNGT 4 cut(s) 206, 683, 784, 835
Bst6I CTCTTC 1 cut(s) 884
BstAFI CTTAAG 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBI TTCGAA 1 cut(s) 125
BstC8I GCNNGC 3 cut(s) 57, 442, 475
BstDEI CTNAG 8 cut(s) 87, 267, 468, 486, 516, 594, 720, 1139
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 281, 969
BstKTI GATC 7 cut(s) 18, 165, 340, 600, 688, 802, 1057
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 7 cut(s) 15, 162, 337, 597, 685, 799, 1054
BstMWI GCNNNNNNNGC 5 cut(s) 11, 239, 268, 761, 914
BstNI CCWGG 4 cut(s) 117, 273, 657, 885
BstNSI RCATGY 1 cut(s) 477
BstSCI CCNGG 4 cut(s) 115, 271, 655, 883
BstSFI CTRYAG 3 cut(s) 205, 915, 1131
BstV1I GCAGC 2 cut(s) 691, 929
BstX2I RGATCY 1 cut(s) 597
BstYI RGATCY 1 cut(s) 597
BsuI GTATCC 1 cut(s) 744
BsuRI GGCC 1 cut(s) 1020
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 2 cut(s) 30, 759
BtsCI GGATG 2 cut(s) 281, 969
BtsIMutI CAGTG 2 cut(s) 202, 755
Cac8I GCNNGC 3 cut(s) 57, 442, 475
CaiI CAGNNNCTG 1 cut(s) 116
CciI TCATGA 1 cut(s) 1057
CseI GACGC 1 cut(s) 61
Csp6I GTAC 5 cut(s) 449, 821, 940, 974, 1080
CviAII CATG 5 cut(s) 160, 474, 677, 738, 1058
CviQI GTAC 5 cut(s) 449, 821, 940, 974, 1080
DdeI CTNAG 8 cut(s) 87, 267, 468, 486, 516, 594, 720, 1139
DpnI GATC 7 cut(s) 17, 164, 339, 599, 687, 801, 1056
DpnII GATC 7 cut(s) 15, 162, 337, 597, 685, 799, 1054
EaeI YGGCCR 1 cut(s) 1018
Eam1104I CTCTTC 1 cut(s) 884
EarI CTCTTC 1 cut(s) 884
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 1150
Eco57I CTGAAG 1 cut(s) 372
EcoRII CCWGG 4 cut(s) 115, 271, 655, 883
EcoT14I CCWWGG 1 cut(s) 1150
ErhI CCWWGG 1 cut(s) 1150
FaeI CATG 5 cut(s) 163, 477, 680, 741, 1061
FatI CATG 5 cut(s) 159, 473, 676, 737, 1057
Fnu4HI GCNGC 2 cut(s) 705, 918
FokI GGATG 2 cut(s) 288, 976
Fsp4HI GCNGC 2 cut(s) 705, 918
FspBI CTAG 2 cut(s) 563, 977
GluI GCNGC 2 cut(s) 705, 918
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 1020
HapII CCGG 2 cut(s) 75, 373
HgaI GACGC 1 cut(s) 61
Hin1II CATG 5 cut(s) 163, 477, 680, 741, 1061
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 8 cut(s) 8, 32, 454, 497, 512, 530, 617, 1063
HpaII CCGG 2 cut(s) 75, 373
HphI GGTGA 2 cut(s) 695, 992
Hpy166II GTNNAC 1 cut(s) 1089
Hpy188I TCNGA 6 cut(s) 20, 195, 487, 517, 631, 721
Hpy188III TCNNGA 3 cut(s) 137, 1049, 1058
Hpy8I GTNNAC 1 cut(s) 1089
Hpy99I CGWCG 3 cut(s) 32, 55, 65
HpyAV CCTTC 2 cut(s) 719, 941
HpyCH4III ACNGT 4 cut(s) 206, 683, 784, 835
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 5 cut(s) 755, 764, 917, 987, 1002
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 239, 268, 761, 914
HpyF3I CTNAG 8 cut(s) 87, 267, 468, 486, 516, 594, 720, 1139
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 5 cut(s) 163, 477, 680, 741, 1061
Kzo9I GATC 7 cut(s) 15, 162, 337, 597, 685, 799, 1054
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 2 cut(s) 691, 929
MaeI CTAG 2 cut(s) 563, 977
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 2 cut(s) 391, 784
MalI GATC 7 cut(s) 17, 164, 339, 599, 687, 801, 1056
MboI GATC 7 cut(s) 15, 162, 337, 597, 685, 799, 1054
MboII GAAGA 7 cut(s) 437, 440, 563, 566, 569, 850, 871
MflI RGATCY 1 cut(s) 597
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 5 cut(s) 36, 176, 812, 900, 1095
MlyI GAGTC 3 cut(s) 17, 491, 539
MmeI TCCRAC 4 cut(s) 393, 609, 678, 948
MnlI CCTC 9 cut(s) 94, 415, 511, 715, 722, 964, 1102, 1138, 1148
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 6 cut(s) 104, 258, 525, 666, 795, 930
MslI CAYNNNNRTG 1 cut(s) 681
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 2 cut(s) 75, 373
MspR9I CCNGG 4 cut(s) 117, 273, 657, 885
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 4 cut(s) 117, 273, 657, 885
MwoI GCNNNNNNNGC 5 cut(s) 11, 239, 268, 761, 914
NdeII GATC 7 cut(s) 15, 162, 337, 597, 685, 799, 1054
NlaIII CATG 5 cut(s) 163, 477, 680, 741, 1061
NlaIV GGNNCC 3 cut(s) 82, 150, 192
NmeAIII GCCGAG 2 cut(s) 162, 443
NspI RCATGY 1 cut(s) 477
NspV TTCGAA 1 cut(s) 125
PaeI GCATGC 1 cut(s) 477
PagI TCATGA 1 cut(s) 1057
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PctI GAATGC 1 cut(s) 766
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 5 cut(s) 32, 454, 512, 617, 1063
PflMI CCANNNNNTGG 2 cut(s) 217, 332
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 2 cut(s) 706, 919
PleI GAGTC 3 cut(s) 16, 491, 538
PpsI GAGTC 3 cut(s) 16, 491, 538
PsiI TTATAA 1 cut(s) 246
Psp1406I AACGTT 1 cut(s) 308
Psp6I CCWGG 4 cut(s) 115, 271, 655, 883
PspGI CCWGG 4 cut(s) 115, 271, 655, 883
PspN4I GGNNCC 3 cut(s) 82, 150, 192
PsrI GAACNNNNNNTAC 2 cut(s) 1029, 1061
PstI CTGCAG 1 cut(s) 919
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 597
RsaI GTAC 5 cut(s) 450, 822, 941, 975, 1081
RsaNI GTAC 5 cut(s) 449, 821, 940, 974, 1080
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 6 cut(s) 104, 258, 525, 666, 795, 930
SatI GCNGC 2 cut(s) 705, 918
Sau3AI GATC 7 cut(s) 15, 162, 337, 597, 685, 799, 1054
ScaI AGTACT 2 cut(s) 822, 941
SchI GAGTC 3 cut(s) 17, 491, 539
ScrFI CCNGG 4 cut(s) 117, 273, 657, 885
SduI GDGCHC 1 cut(s) 256
SfcI CTRYAG 3 cut(s) 205, 915, 1131
SfuI TTCGAA 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 2 cut(s) 257, 689
SmoI CTYRAG 2 cut(s) 257, 689
SphI GCATGC 1 cut(s) 477
Sse9I AATT 5 cut(s) 36, 176, 812, 900, 1095
SsiI CCGC 3 cut(s) 5, 78, 281
SspMI CTAG 2 cut(s) 563, 977
StyD4I CCNGG 4 cut(s) 115, 271, 655, 883
StyI CCWWGG 1 cut(s) 1150
TaaI ACNGT 4 cut(s) 206, 683, 784, 835
TaiI ACGT 1 cut(s) 311
TaqI TCGA 4 cut(s) 30, 125, 138, 356
TasI AATT 5 cut(s) 36, 176, 812, 900, 1095
TatI WGTACW 4 cut(s) 448, 820, 939, 1079
TfiI GAWTC 5 cut(s) 32, 454, 512, 617, 1063
Tru1I TTAA 6 cut(s) 104, 258, 525, 666, 795, 930
Tru9I TTAA 6 cut(s) 104, 258, 525, 666, 795, 930
TscAI CASTG 2 cut(s) 209, 762
TseI GCWGC 2 cut(s) 704, 917
TspDTI ATGAA 3 cut(s) 240, 960, 1155
TspGWI ACGGA 2 cut(s) 141, 1103
TspRI CASTG 2 cut(s) 209, 762
Van91I CCANNNNNTGG 2 cut(s) 217, 332
Vha464I CTTAAG 1 cut(s) 257
XceI RCATGY 1 cut(s) 477
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 2 cut(s) 563, 977
ZrmI AGTACT 2 cut(s) 822, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.