Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005899.1

Orthogroup ID

OG0004757

Physical Location & Seq

Genomic Coordinates Forward (+)

6407 .. 10514

Gene Structure 4108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005899.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgacagagggtggttgttgtccggatgtgatgaatggcggaatcagggcactagtggaagcgattcactctactcccactcagtccgttctctatctctccggcggagcctctcaggcggtggcgtggttactctccgttcccggagcttcaagtacagtcctggaaactgtagtgccttattcccgaatgtctatgatccaattactaggcaagattccggacaatttttgtagccagcacactgctgaagaaatggctctgttggcttacaatcgcgctctcaagctctcctcaccaggttccccagttcttggtgtgggtttcactggttctttggttacctcacatccaaagctcggggaccacaggttttatttgtcaacaaggacatctgacagactctcggtatcgacagtgaccctttccaagggtttacgaaaccgagaggaagaagatatggttgcaagtcatcttgtactcaaggcaattgcaaatgcgtgcaaagttccgggaacatttgtttcagatctcactgaatctgaagtgccagatgaatgtgaaaaacagttcagcgaagatgaggaattagagcaacttataaatgggcaaatatgcttcaaggtttatcccttttcaagtgagccatctgtgccaattgcagaaagaaggataatactgtctggttcttttaatccattacacgaaggtcacttcaagctattggaggttgcttccagcatctgtggcgacggctacccatgctttgaactatctgcaatcaatgctgacaaacctccactttcgatatcacaaatcaaagatcgtgtcaagcaatttgaaaaagttggaaaaacggtaattatatccaatcagccatatttttataagaaagctgaactcttcccaggcagtgcatttgtgattggtgctgatacagtagcaaggctgattaatcccaaatactatgatggggactatagaacgatgctagatatacttcttggatgcaagaaaacagggtccacttttcttgtgggcggtcgtaatgtagatggtgttttcaaggtgctggaagattttgaaattccggaagagctaagagatatgttcattccaattccaccagagaagttccggatggatatatcctccacggaaatcaggaaaaaacttggaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

394

Amino Acids

43.19

Weight (kDa)

5.64

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01220 AT2G01220 AT3G27610 AT3G27610 AT3G27610 AT3G27610 AT3G27610 AT3G27610 AT3G27610 AT3G27610 AT3G27610
fragaria_vesca	FvH4_4g26720 FvH4_4g26720 FvH4_4g26720
malus_domestica	MD16G1037200.v1.1
prunus_persica	Prupe.1G316800_v2.0.a1
pyrus_communis	pycom16g03220
rosa_chinensis	RchiOBHm_Chr4g0434411
rosa_laevigata	RLG00000006673
rosa_multiflora	Rmu_sc0005899.1_g000003 Rmu_sc0011727.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375770
rosa_rugosa	Rorug04G0276300 Rorug04G0276300 Rorug04G0276400 Rorug04G0276500 Rorug04G0276600
rosa_samantha	Rh4BG339800 Rh4CG355000 Rh4DG335000
rosa_wichuraiana	Rw4G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	602, 888
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccII	CGCG	1 cut(s)	279
AccIII	TCCGGA	4 cut(s)	22, 220, 1090, 1137
AciI	CCGC	4 cut(s)	39, 105, 119, 1041
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	1086
AcuI	CTGAAG	2 cut(s)	270, 564
AfaI	GTAC	2 cut(s)	157, 480
AfiI	CCNNNNNNNGG	3 cut(s)	314, 359, 430
AgsI	TTSAA	8 cut(s)	153, 622, 639, 718, 770, 842, 1066, 1085
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	3 cut(s)	162, 298, 907
AluBI	AGCT	6 cut(s)	149, 289, 358, 721, 896, 1099
AluI	AGCT	6 cut(s)	149, 289, 358, 721, 896, 1099
AlwI	GGATC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	744
Ama87I	CYCGRG	1 cut(s)	359
Aor13HI	TCCGGA	4 cut(s)	22, 220, 1090, 1137
ApoI	RAATTY	1 cut(s)	1086
ArsI	GACNNNNNNTTYG	2 cut(s)	813, 845
AseI	ATTAAT	1 cut(s)	954
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	364, 1023
AsuC2I	CCSGG	2 cut(s)	144, 513
AsuHPI	GGTGA	1 cut(s)	288
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	364, 1023
BaeGI	GKGCMC	1 cut(s)	52
BccI	CCATC	4 cut(s)	655, 965, 1049, 1135
BceAI	ACGGC	1 cut(s)	769
BciT130I	CCWGG	3 cut(s)	164, 300, 909
BcnI	CCSGG	2 cut(s)	144, 513
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	3 cut(s)	53, 209, 992
BfmI	CTRYAG	2 cut(s)	171, 979
BglI	GCCNNNNNGGC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	529
Bme1390I	CCNGG	5 cut(s)	144, 164, 300, 513, 909
Bme18I	GGWCC	2 cut(s)	364, 1023
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	364, 1023
BmiI	GGNNCC	4 cut(s)	109, 304, 365, 1024
BmrFI	CCNGG	5 cut(s)	144, 164, 300, 513, 909
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	3 cut(s)	750, 978, 998
BmuI	ACTGGG	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	269, 467
BpuMI	CCSGG	2 cut(s)	144, 513
BsaJI	CCNNGG	3 cut(s)	429, 907, 1155
BsaWI	WCCGGW	4 cut(s)	22, 220, 1090, 1137
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 359, 430
Bse1I	ACTGG	2 cut(s)	308, 334
BseAI	TCCGGA	4 cut(s)	22, 220, 1090, 1137
BseBI	CCWGG	3 cut(s)	164, 300, 909
BseDI	CCNNGG	3 cut(s)	429, 907, 1155
BseGI	GGATG	4 cut(s)	31, 349, 1013, 1146
BseLI	CCNNNNNNNGG	3 cut(s)	314, 359, 430
BseMII	CTCAG	2 cut(s)	95, 128
BseNI	ACTGG	2 cut(s)	308, 334
BseRI	GAGGAG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	1045
BsiEI	CGRYCG	1 cut(s)	1045
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	7 cut(s)	23, 102, 144, 221, 512, 1091, 1138
BslFI	GGGAC	2 cut(s)	377, 989
BslI	CCNNNNNNNGG	3 cut(s)	314, 359, 430
BsmFI	GGGAC	2 cut(s)	377, 989
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp13I	TCCGGA	4 cut(s)	22, 220, 1090, 1137
Bsp143I	GATC	3 cut(s)	198, 529, 823
BspACI	CCGC	4 cut(s)	39, 105, 119, 1041
BspCNI	CTCAG	2 cut(s)	94, 127
BspEI	TCCGGA	4 cut(s)	22, 220, 1090, 1137
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	4 cut(s)	109, 304, 365, 1024
BspPI	GGATC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	1089
BsrI	ACTGG	2 cut(s)	308, 334
BssECI	CCNNGG	3 cut(s)	429, 907, 1155
BssMI	GATC	3 cut(s)	198, 529, 823
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	3 cut(s)	164, 300, 909
Bst4CI	ACNGT	7 cut(s)	160, 172, 418, 570, 681, 859, 940
Bst6I	CTCTTC	2 cut(s)	908, 1089
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstC8I	GCNNGC	2 cut(s)	239, 502
BstDEI	CTNAG	3 cut(s)	81, 114, 1100
BstDSI	CCRYGG	1 cut(s)	1155
BstEII	GGTNACC	1 cut(s)	340
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	4 cut(s)	31, 349, 1013, 1146
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	3 cut(s)	201, 532, 826
BstMBI	GATC	3 cut(s)	198, 529, 823
BstMCI	CGRYCG	1 cut(s)	1045
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 266, 652, 747, 762, 785
BstNI	CCWGG	3 cut(s)	164, 300, 909
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	5 cut(s)	142, 162, 298, 511, 907
BstSFI	CTRYAG	2 cut(s)	171, 979
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BtgI	CCRYGG	1 cut(s)	1155
BtsCI	GGATG	4 cut(s)	31, 349, 1013, 1146
BtsI	GCAGTG	2 cut(s)	243, 919
BtsIMutI	CAGTG	5 cut(s)	243, 327, 423, 534, 919
Cac8I	GCNNGC	2 cut(s)	239, 502
CaiI	CAGNNNCTG	1 cut(s)	744
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	364, 1023
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	156, 479
CspCI	CAANNNNNGTGG	2 cut(s)	1015, 1050
CviAII	CATG	1 cut(s)	762
CviQI	GTAC	2 cut(s)	156, 479
DdeI	CTNAG	3 cut(s)	81, 114, 1100
DpnI	GATC	3 cut(s)	200, 531, 825
DpnII	GATC	3 cut(s)	198, 529, 823
Eam1104I	CTCTTC	2 cut(s)	908, 1089
EarI	CTCTTC	2 cut(s)	908, 1089
EciI	GGCGGA	2 cut(s)	54, 120
Eco130I	CCWWGG	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	810
Eco47I	GGWCC	2 cut(s)	364, 1023
Eco57I	CTGAAG	2 cut(s)	270, 564
Eco88I	CYCGRG	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	340
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	340
EcoRII	CCWGG	3 cut(s)	162, 298, 907
EcoRV	GATATC	1 cut(s)	810
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	1 cut(s)	765
FaqI	GGGAC	2 cut(s)	377, 989
FatI	CATG	1 cut(s)	761
FokI	GGATG	4 cut(s)	38, 336, 1020, 1153
FspBI	CTAG	3 cut(s)	53, 209, 992
GlaI	GCGC	1 cut(s)	280
HapII	CCGG	7 cut(s)	23, 102, 144, 221, 512, 1091, 1138
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	765
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	5 cut(s)	42, 64, 217, 402, 539
HpaII	CCGG	7 cut(s)	23, 102, 144, 221, 512, 1091, 1138
HphI	GGTGA	1 cut(s)	288
Hpy166II	GTNNAC	3 cut(s)	384, 437, 1026
Hpy188I	TCNGA	3 cut(s)	397, 529, 544
Hpy188III	TCNNGA	6 cut(s)	23, 186, 221, 1091, 1138, 1165
Hpy8I	GTNNAC	3 cut(s)	384, 437, 1026
Hpy99I	CGWCG	1 cut(s)	755
HpyAV	CCTTC	2 cut(s)	663, 701
HpyCH4III	ACNGT	7 cut(s)	160, 172, 418, 570, 681, 859, 940
HpyCH4V	TGCA	7 cut(s)	467, 494, 504, 662, 779, 917, 1011
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 266, 652, 747, 762, 785
HpyF3I	CTNAG	3 cut(s)	81, 114, 1100
Hsp92II	CATG	1 cut(s)	765
HspAI	GCGC	1 cut(s)	279
Kpn2I	TCCGGA	4 cut(s)	22, 220, 1090, 1137
Kzo9I	GATC	3 cut(s)	198, 529, 823
LguI	GCTCTTC	1 cut(s)	1089
LmnI	GCTCC	2 cut(s)	107, 146
LweI	GCATC	3 cut(s)	750, 978, 998
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	3 cut(s)	53, 209, 992
MaeIII	GTNAC	4 cut(s)	129, 340, 418, 710
MalI	GATC	3 cut(s)	200, 531, 825
MboI	GATC	3 cut(s)	198, 529, 823
MboII	GAAGA	7 cut(s)	263, 464, 467, 590, 895, 1088, 1106
MfeI	CAATTG	2 cut(s)	489, 657
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	9 cut(s)	203, 226, 489, 587, 657, 836, 861, 1086, 1119
MlyI	GAGTC	1 cut(s)	396
MmeI	TCCRAC	1 cut(s)	829
MnlI	CCTC	8 cut(s)	121, 304, 355, 442, 577, 721, 807, 1162
MroI	TCCGGA	4 cut(s)	22, 220, 1090, 1137
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	2 cut(s)	693, 954
MspI	CCGG	7 cut(s)	23, 102, 144, 221, 512, 1091, 1138
MspR9I	CCNGG	5 cut(s)	144, 164, 300, 513, 909
MunI	CAATTG	2 cut(s)	489, 657
MvaI	CCWGG	3 cut(s)	164, 300, 909
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	6 cut(s)	116, 266, 652, 747, 762, 785
NciI	CCSGG	2 cut(s)	144, 513
NdeII	GATC	3 cut(s)	198, 529, 823
NlaIII	CATG	1 cut(s)	765
NlaIV	GGNNCC	4 cut(s)	109, 304, 365, 1024
NmuCI	GTSAC	2 cut(s)	418, 710
PciSI	GCTCTTC	1 cut(s)	1089
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	4 cut(s)	42, 64, 217, 539
PflMI	CCANNNNNTGG	1 cut(s)	314
PfoI	TCCNGGA	3 cut(s)	142, 162, 511
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PshBI	ATTAAT	1 cut(s)	954
PsiI	TTATAA	2 cut(s)	602, 888
Psp6I	CCWGG	3 cut(s)	162, 298, 907
PspEI	GGTNACC	1 cut(s)	340
PspGI	CCWGG	3 cut(s)	162, 298, 907
PspN4I	GGNNCC	4 cut(s)	109, 304, 365, 1024
PspPI	GGNCC	2 cut(s)	364, 1023
PstNI	CAGNNNCTG	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	2 cut(s)	157, 480
RsaNI	GTAC	2 cut(s)	156, 479
SapI	GCTCTTC	1 cut(s)	1089
SaqAI	TTAA	2 cut(s)	693, 954
Sau3AI	GATC	3 cut(s)	198, 529, 823
Sau96I	GGNCC	2 cut(s)	364, 1023
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	5 cut(s)	144, 164, 300, 513, 909
SduI	GDGCHC	1 cut(s)	52
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	3 cut(s)	750, 978, 998
SfcI	CTRYAG	2 cut(s)	171, 979
SinI	GGWCC	2 cut(s)	364, 1023
SmlI	CTYRAG	2 cut(s)	284, 482
SmoI	CTYRAG	2 cut(s)	284, 482
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	9 cut(s)	203, 226, 489, 587, 657, 836, 861, 1086, 1119
SsiI	CCGC	4 cut(s)	39, 105, 119, 1041
SspMI	CTAG	3 cut(s)	53, 209, 992
StyD4I	CCNGG	5 cut(s)	142, 162, 298, 511, 907
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	7 cut(s)	160, 172, 418, 570, 681, 859, 940
TaqI	TCGA	2 cut(s)	413, 806
TasI	AATT	9 cut(s)	203, 226, 489, 587, 657, 836, 861, 1086, 1119
TatI	WGTACW	2 cut(s)	155, 478
TfiI	GAWTC	4 cut(s)	42, 64, 217, 539
Tru1I	TTAA	2 cut(s)	693, 954
Tru9I	TTAA	2 cut(s)	693, 954
TscAI	CASTG	5 cut(s)	250, 334, 423, 541, 919
TseFI	GTSAC	2 cut(s)	418, 710
Tsp45I	GTSAC	2 cut(s)	418, 710
TspDTI	ATGAA	3 cut(s)	47, 570, 1102
TspGWI	ACGGA	3 cut(s)	76, 127, 1172
TspRI	CASTG	5 cut(s)	250, 334, 423, 541, 919
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	364, 1023
VspI	ATTAAT	1 cut(s)	954
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	1086
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1033
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	3 cut(s)	53, 209, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.