Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011727.1

Orthogroup ID

OG0004757

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4612

Gene Structure 4612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

gcggtggcgtggttactctccgttcccggagcttcaagtacagtcctggaaactgtagtgccttattcccgaatgtctatgatccaattactaggcaagattccggacaatttttgtagccagcacactgctgaagaaatggctctgttggcttacaatcgcgctctcaagctctcctcaccaggttccccagttcttggtgtgggtttcactggttctttggttacctcacatccaaagctcggggaccacaggttttatttgtcaacaaggacatctgacagactctcggtatcgacagtgaccctttccaagggtttacgaaaccgagaggaagaagatatggttgcaagtcatcttgtactcaaggcaattgcaaatgcgtgcaaagttccgggaacatttgtttcagatctcactgaatctgaagtgccagatgaatgtgaaaaacagttcagcgaagatgaggaattagagcaacttataaatgggcaaatatgcttcaaggtttatcccttttcaagtgagccatctgtgccaattgcagaaagaaggataatactgtctggttcttttaatccattacacgaaggtcacttcaagctattggaggttgcttccagcatctgtggcgacggctacccatgctttgaactatctgcaatcaatgctgacaaacctccactttcgatatcacaaatcaaagatcgtgtcaagcaatttgaaaaagttggaaaaacggtaattatatccaatcagccatatttttataagaaagctgaactcttcccaggcagtgcatttgtgattggtgctgatacagtagcaaggctgattaatcccaaatactatgatggggactatagaacgatgctagatatacttcttggatgcaagaaaacagggtccacttttcttgtgggcggtcgtaatgtagatggtgttttcaaggtgctggaagattttgaaattccggaagagctaagagatatgttcattccaattccaccagagaagttccggatggatatatcctccacggaaatcaggaaaaaacttggaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

355

Amino Acids

39.26

Weight (kDa)

5.81

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01220 AT2G01220 AT3G27610 AT3G27610 AT3G27610 AT3G27610 AT3G27610 AT3G27610 AT3G27610 AT3G27610 AT3G27610
fragaria_vesca	FvH4_4g26720 FvH4_4g26720 FvH4_4g26720
malus_domestica	MD16G1037200.v1.1
prunus_persica	Prupe.1G316800_v2.0.a1
pyrus_communis	pycom16g03220
rosa_chinensis	RchiOBHm_Chr4g0434411
rosa_laevigata	RLG00000006673
rosa_multiflora	Rmu_sc0005899.1_g000003 Rmu_sc0011727.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375770
rosa_rugosa	Rorug04G0276300 Rorug04G0276300 Rorug04G0276400 Rorug04G0276500 Rorug04G0276600
rosa_samantha	Rh4BG339800 Rh4CG355000 Rh4DG335000
rosa_wichuraiana	Rw4G028790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	485, 771
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccII	CGCG	1 cut(s)	162
AccIII	TCCGGA	3 cut(s)	103, 973, 1020
AciI	CCGC	2 cut(s)	2, 924
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	969
AcuI	CTGAAG	2 cut(s)	153, 447
AfaI	GTAC	2 cut(s)	40, 363
AfiI	CCNNNNNNNGG	3 cut(s)	197, 242, 313
AgsI	TTSAA	8 cut(s)	36, 505, 522, 601, 653, 725, 949, 968
AjnI	CCWGG	3 cut(s)	45, 181, 790
AluBI	AGCT	6 cut(s)	32, 172, 241, 604, 779, 982
AluI	AGCT	6 cut(s)	32, 172, 241, 604, 779, 982
AlwI	GGATC	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	627
Ama87I	CYCGRG	1 cut(s)	242
Aor13HI	TCCGGA	3 cut(s)	103, 973, 1020
ApoI	RAATTY	1 cut(s)	969
ArsI	GACNNNNNNTTYG	2 cut(s)	696, 728
AseI	ATTAAT	1 cut(s)	837
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	247, 906
AsuC2I	CCSGG	2 cut(s)	27, 396
AsuHPI	GGTGA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	2 cut(s)	247, 906
BccI	CCATC	4 cut(s)	538, 848, 932, 1018
BceAI	ACGGC	1 cut(s)	652
BciT130I	CCWGG	3 cut(s)	47, 183, 792
BcnI	CCSGG	2 cut(s)	27, 396
BfaI	CTAG	2 cut(s)	92, 875
BfmI	CTRYAG	2 cut(s)	54, 862
BglII	AGATCT	1 cut(s)	412
Bme1390I	CCNGG	5 cut(s)	27, 47, 183, 396, 792
Bme18I	GGWCC	2 cut(s)	247, 906
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	247, 906
BmiI	GGNNCC	3 cut(s)	187, 248, 907
BmrFI	CCNGG	5 cut(s)	27, 47, 183, 396, 792
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	3 cut(s)	633, 861, 881
BmuI	ACTGGG	1 cut(s)	185
BpuEI	CTTGAG	2 cut(s)	152, 350
BpuMI	CCSGG	2 cut(s)	27, 396
BsaJI	CCNNGG	3 cut(s)	312, 790, 1038
BsaWI	WCCGGW	3 cut(s)	103, 973, 1020
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 242, 313
Bse1I	ACTGG	2 cut(s)	191, 217
BseAI	TCCGGA	3 cut(s)	103, 973, 1020
BseBI	CCWGG	3 cut(s)	47, 183, 792
BseDI	CCNNGG	3 cut(s)	312, 790, 1038
BseGI	GGATG	3 cut(s)	232, 896, 1029
BseLI	CCNNNNNNNGG	3 cut(s)	197, 242, 313
BseNI	ACTGG	2 cut(s)	191, 217
BseRI	GAGGAG	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	928
BsiEI	CGRYCG	1 cut(s)	928
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	5 cut(s)	27, 104, 395, 974, 1021
BslFI	GGGAC	2 cut(s)	260, 872
BslI	CCNNNNNNNGG	3 cut(s)	197, 242, 313
BsmFI	GGGAC	2 cut(s)	260, 872
BsoBI	CYCGRG	1 cut(s)	242
Bsp13I	TCCGGA	3 cut(s)	103, 973, 1020
Bsp143I	GATC	3 cut(s)	81, 412, 706
BspACI	CCGC	2 cut(s)	2, 924
BspEI	TCCGGA	3 cut(s)	103, 973, 1020
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	3 cut(s)	187, 248, 907
BspPI	GGATC	1 cut(s)	76
BspQI	GCTCTTC	1 cut(s)	972
BsrI	ACTGG	2 cut(s)	191, 217
BssECI	CCNNGG	3 cut(s)	312, 790, 1038
BssMI	GATC	3 cut(s)	81, 412, 706
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	3 cut(s)	47, 183, 792
Bst4CI	ACNGT	7 cut(s)	43, 55, 301, 453, 564, 742, 823
Bst6I	CTCTTC	2 cut(s)	791, 972
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	122, 385
BstDEI	CTNAG	1 cut(s)	983
BstDSI	CCRYGG	1 cut(s)	1038
BstEII	GGTNACC	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	3 cut(s)	232, 896, 1029
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	3 cut(s)	84, 415, 709
BstMBI	GATC	3 cut(s)	81, 412, 706
BstMCI	CGRYCG	1 cut(s)	928
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 535, 630, 645, 668
BstNI	CCWGG	3 cut(s)	47, 183, 792
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	5 cut(s)	25, 45, 181, 394, 790
BstSFI	CTRYAG	2 cut(s)	54, 862
BstUI	CGCG	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	1038
BtsCI	GGATG	3 cut(s)	232, 896, 1029
BtsI	GCAGTG	2 cut(s)	126, 802
BtsIMutI	CAGTG	5 cut(s)	126, 210, 306, 417, 802
Cac8I	GCNNGC	2 cut(s)	122, 385
CaiI	CAGNNNCTG	1 cut(s)	627
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	247, 906
CsiI	ACCWGGT	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	39, 362
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	1 cut(s)	645
CviQI	GTAC	2 cut(s)	39, 362
DdeI	CTNAG	1 cut(s)	983
DpnI	GATC	3 cut(s)	83, 414, 708
DpnII	GATC	3 cut(s)	81, 412, 706
Eam1104I	CTCTTC	2 cut(s)	791, 972
EarI	CTCTTC	2 cut(s)	791, 972
Eco130I	CCWWGG	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	693
Eco47I	GGWCC	2 cut(s)	247, 906
Eco57I	CTGAAG	2 cut(s)	153, 447
Eco88I	CYCGRG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	223
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	3 cut(s)	45, 181, 790
EcoRV	GATATC	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	648
FaqI	GGGAC	2 cut(s)	260, 872
FatI	CATG	1 cut(s)	644
FokI	GGATG	3 cut(s)	219, 903, 1036
FspBI	CTAG	2 cut(s)	92, 875
GlaI	GCGC	1 cut(s)	163
HapII	CCGG	5 cut(s)	27, 104, 395, 974, 1021
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	648
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	3 cut(s)	100, 285, 422
HpaII	CCGG	5 cut(s)	27, 104, 395, 974, 1021
HphI	GGTGA	1 cut(s)	171
Hpy166II	GTNNAC	3 cut(s)	267, 320, 909
Hpy188I	TCNGA	3 cut(s)	280, 412, 427
Hpy188III	TCNNGA	5 cut(s)	69, 104, 974, 1021, 1048
Hpy8I	GTNNAC	3 cut(s)	267, 320, 909
Hpy99I	CGWCG	1 cut(s)	638
HpyAV	CCTTC	2 cut(s)	546, 584
HpyCH4III	ACNGT	7 cut(s)	43, 55, 301, 453, 564, 742, 823
HpyCH4V	TGCA	7 cut(s)	350, 377, 387, 545, 662, 800, 894
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 535, 630, 645, 668
HpyF3I	CTNAG	1 cut(s)	983
Hsp92II	CATG	1 cut(s)	648
HspAI	GCGC	1 cut(s)	162
Kpn2I	TCCGGA	3 cut(s)	103, 973, 1020
Kzo9I	GATC	3 cut(s)	81, 412, 706
LguI	GCTCTTC	1 cut(s)	972
LmnI	GCTCC	1 cut(s)	29
LweI	GCATC	3 cut(s)	633, 861, 881
MabI	ACCWGGT	1 cut(s)	181
MaeI	CTAG	2 cut(s)	92, 875
MaeIII	GTNAC	4 cut(s)	12, 223, 301, 593
MalI	GATC	3 cut(s)	83, 414, 708
MboI	GATC	3 cut(s)	81, 412, 706
MboII	GAAGA	7 cut(s)	146, 347, 350, 473, 778, 971, 989
MfeI	CAATTG	2 cut(s)	372, 540
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	9 cut(s)	86, 109, 372, 470, 540, 719, 744, 969, 1002
MlyI	GAGTC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	7 cut(s)	187, 238, 325, 460, 604, 690, 1045
MroI	TCCGGA	3 cut(s)	103, 973, 1020
MseI	TTAA	2 cut(s)	576, 837
MspI	CCGG	5 cut(s)	27, 104, 395, 974, 1021
MspR9I	CCNGG	5 cut(s)	27, 47, 183, 396, 792
MunI	CAATTG	2 cut(s)	372, 540
MvaI	CCWGG	3 cut(s)	47, 183, 792
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	5 cut(s)	149, 535, 630, 645, 668
NciI	CCSGG	2 cut(s)	27, 396
NdeII	GATC	3 cut(s)	81, 412, 706
NlaIII	CATG	1 cut(s)	648
NlaIV	GGNNCC	3 cut(s)	187, 248, 907
NmuCI	GTSAC	2 cut(s)	301, 593
PciSI	GCTCTTC	1 cut(s)	972
PfeI	GAWTC	2 cut(s)	100, 422
PflMI	CCANNNNNTGG	1 cut(s)	197
PfoI	TCCNGGA	3 cut(s)	25, 45, 394
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
PshBI	ATTAAT	1 cut(s)	837
PsiI	TTATAA	2 cut(s)	485, 771
Psp6I	CCWGG	3 cut(s)	45, 181, 790
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	3 cut(s)	45, 181, 790
PspN4I	GGNNCC	3 cut(s)	187, 248, 907
PspPI	GGNCC	2 cut(s)	247, 906
PstNI	CAGNNNCTG	1 cut(s)	627
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	2 cut(s)	40, 363
RsaNI	GTAC	2 cut(s)	39, 362
SapI	GCTCTTC	1 cut(s)	972
SaqAI	TTAA	2 cut(s)	576, 837
Sau3AI	GATC	3 cut(s)	81, 412, 706
Sau96I	GGNCC	2 cut(s)	247, 906
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	5 cut(s)	27, 47, 183, 396, 792
SexAI	ACCWGGT	1 cut(s)	181
SfaNI	GCATC	3 cut(s)	633, 861, 881
SfcI	CTRYAG	2 cut(s)	54, 862
SinI	GGWCC	2 cut(s)	247, 906
SmlI	CTYRAG	2 cut(s)	167, 365
SmoI	CTYRAG	2 cut(s)	167, 365
Sse9I	AATT	9 cut(s)	86, 109, 372, 470, 540, 719, 744, 969, 1002
SsiI	CCGC	2 cut(s)	2, 924
SspMI	CTAG	2 cut(s)	92, 875
StyD4I	CCNGG	5 cut(s)	25, 45, 181, 394, 790
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	7 cut(s)	43, 55, 301, 453, 564, 742, 823
TaqI	TCGA	2 cut(s)	296, 689
TasI	AATT	9 cut(s)	86, 109, 372, 470, 540, 719, 744, 969, 1002
TatI	WGTACW	2 cut(s)	38, 361
TfiI	GAWTC	2 cut(s)	100, 422
Tru1I	TTAA	2 cut(s)	576, 837
Tru9I	TTAA	2 cut(s)	576, 837
TscAI	CASTG	5 cut(s)	133, 217, 306, 424, 802
TseFI	GTSAC	2 cut(s)	301, 593
Tsp45I	GTSAC	2 cut(s)	301, 593
TspDTI	ATGAA	2 cut(s)	453, 985
TspGWI	ACGGA	2 cut(s)	10, 1055
TspRI	CASTG	5 cut(s)	133, 217, 306, 424, 802
Van91I	CCANNNNNTGG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	247, 906
VspI	ATTAAT	1 cut(s)	837
XagI	CCTNNNNNAGG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	969
XcmI	CCANNNNNNNNNTGG	1 cut(s)	916
XspI	CTAG	2 cut(s)	92, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.