Rroxscaffold_5G00375770

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004757
Physical Location & Seq
Forward (+)
56524161 .. 56528713
4553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375770.1

Sequence Viewer

Length: 1185 bp
ATGACAGAGGGTGCTTGCTGTACGAATGTGATGAATAGCGGAATCAGAGCACTAGTGGAAGCCATTCACTCTACTCCCACTCAGTCCGTTCTCTATCTCTCCGGCGGAGCCTCTCAGGCGGTGGCGTGGTTACTCTCGGTTCCCGGAGCCTCAAGTACAGTCCTGGAAACTGTAGTGCCTTACTCCCGAATGTCTATGATCCAATTACTCGGCAAGATTCCGGACAAGTTTTGTAGCCGGCACACTACTGAAGAAATGGCTCTGTTGGCTTACAATCGCGCTCTCAAGCTCTCCTCACCAGGTTCCCCAGTTCTTGGTGTGGGTTTCACTGGTTCTTTGGCTACCTCACATCCAAAGCTCGGGGACCACAGGTTTTATTTGTCAACAAGGACATCTGACAGACTTTCGGTATCAACAGTGACCCTTTCCAAGGGTTTACGAAACCGAGAGGAAGAAGATATGGTTGCAAGTCATCTTGTACTCAAGGCAATTGCAAATGCGTGCAAAGTTCCCGGAACATTTGTTTCAGATCTCACTGAATCTGAAGTGCCTGATGAATGTGAAAAACAGTTCAGCGAAGATGAAGAATTAGAGCAACTTATAAATGGGCAAATATGCTTCAAGGTTTATCCCTTTTCAAGTGAGCCATCTGTGCCAATTGCAGAAAGAAGGCTAATACTGTCTGGTTCTTTTAATCCATTACACGAAGGTCACTTCAAGCTATTGGAGGTTGCTACCAGCATCTGTGGCGATGGCTACCCATGCTTTGAACTATCTGCAATCAATGCTGACAAACCTCCACTTTCAATATCACAAATCAAAGATCGTGTCAAGCAATTTGAAAAAGTTGGAAAAACGGTAATTATATCCAATCAGCCATATTTTTATAAGAAAGCTGAACTCTTCCCAGGCAGTGCATTTGTGATTGGTGCTGACACAGCAGCAAGGCTAATTAATCCCAAATACTATGACGGGGACTATAGAAAGATGCTAGATATACTTCTTGGATGCAAGAAAACAGGGTCCACTTTTCTTGTGGGCGGTCGTAATGTAGATGGTGTTTTCAAGGTGCTGGAAGATTTTGAAATTCCGGAAGAGCTAAGAGATATGTTCATTTCAATTCCACCAGAGAAGTTCCGGATGGATATATCCTCCACGGAAATCAGGAAAAAACTTGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

394

Amino Acids

43.28

Weight (kDa)

6.22

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 227 - 390 1.2e-08 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 602, 888
AccB7I CCANNNNNTGG 1 cut(s) 314
AccII CGCG 1 cut(s) 279
AccIII TCCGGA 3 cut(s) 220, 1090, 1137
AciI CCGC 4 cut(s) 39, 105, 119, 1041
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 1 cut(s) 1086
AcuI CTGAAG 2 cut(s) 270, 564
AfaI GTAC 3 cut(s) 22, 157, 480
AfiI CCNNNNNNNGG 3 cut(s) 314, 359, 430
AgsI TTSAA 9 cut(s) 622, 639, 718, 770, 807, 842, 1066, 1085, 1119
AhlI ACTAGT 1 cut(s) 52
AjnI CCWGG 3 cut(s) 162, 298, 907
AluBI AGCT 5 cut(s) 289, 358, 721, 896, 1099
AluI AGCT 5 cut(s) 289, 358, 721, 896, 1099
Alw21I GWGCWC 1 cut(s) 52
AlwI GGATC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 744
Ama87I CYCGRG 1 cut(s) 359
Aor13HI TCCGGA 3 cut(s) 220, 1090, 1137
ApeKI GCWGC 1 cut(s) 941
ApoI RAATTY 1 cut(s) 1086
ArsI GACNNNNNNTTYG 2 cut(s) 813, 845
AseI ATTAAT 1 cut(s) 954
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 364, 1023
AsuC2I CCSGG 2 cut(s) 144, 513
AsuHPI GGTGA 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 364, 1023
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 953
BccI CCATC 4 cut(s) 655, 746, 1049, 1135
BciT130I CCWGG 3 cut(s) 164, 300, 909
BcnI CCSGG 2 cut(s) 144, 513
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 2 cut(s) 53, 992
BfmI CTRYAG 2 cut(s) 171, 979
BglI GCCNNNNNGGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 529
BisI GCNGC 1 cut(s) 942
BlsI GCNGC 1 cut(s) 943
Bme1390I CCNGG 5 cut(s) 144, 164, 300, 513, 909
Bme18I GGWCC 2 cut(s) 364, 1023
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 364, 1023
BmiI GGNNCC 6 cut(s) 109, 141, 148, 304, 365, 1024
BmrFI CCNGG 5 cut(s) 144, 164, 300, 513, 909
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 3 cut(s) 750, 978, 998
BmuI ACTGGG 1 cut(s) 302
BpuEI CTTGAG 3 cut(s) 136, 269, 467
BpuMI CCSGG 2 cut(s) 144, 513
BsaJI CCNNGG 3 cut(s) 429, 907, 1155
BsaWI WCCGGW 3 cut(s) 220, 1090, 1137
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 359, 430
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 2 cut(s) 308, 334
BseAI TCCGGA 3 cut(s) 220, 1090, 1137
BseBI CCWGG 3 cut(s) 164, 300, 909
BseDI CCNNGG 3 cut(s) 429, 907, 1155
BseGI GGATG 3 cut(s) 349, 1013, 1146
BseLI CCNNNNNNNGG 3 cut(s) 314, 359, 430
BseMII CTCAG 2 cut(s) 95, 128
BseNI ACTGG 2 cut(s) 308, 334
BseRI GAGGAG 1 cut(s) 283
BseXI GCAGC 1 cut(s) 953
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 1045
BsiEI CGRYCG 1 cut(s) 1045
BsiHKAI GWGCWC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 7 cut(s) 102, 144, 221, 238, 513, 1091, 1138
BslFI GGGAC 2 cut(s) 377, 989
BslI CCNNNNNNNGG 3 cut(s) 314, 359, 430
BsmFI GGGAC 2 cut(s) 377, 989
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 52
Bsp13I TCCGGA 3 cut(s) 220, 1090, 1137
Bsp143I GATC 3 cut(s) 198, 529, 823
BspACI CCGC 4 cut(s) 39, 105, 119, 1041
BspCNI CTCAG 2 cut(s) 94, 127
BspEI TCCGGA 3 cut(s) 220, 1090, 1137
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 6 cut(s) 109, 141, 148, 304, 365, 1024
BspPI GGATC 1 cut(s) 193
BspQI GCTCTTC 1 cut(s) 1089
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 2 cut(s) 308, 334
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 3 cut(s) 429, 907, 1155
BssMI GATC 3 cut(s) 198, 529, 823
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 3 cut(s) 164, 300, 909
Bst4CI ACNGT 6 cut(s) 160, 172, 418, 570, 681, 859
Bst6I CTCTTC 2 cut(s) 908, 1089
BstAPI GCANNNNNTGC 1 cut(s) 785
BstC8I GCNNGC 3 cut(s) 16, 239, 502
BstDEI CTNAG 3 cut(s) 81, 114, 1100
BstDSI CCRYGG 1 cut(s) 1155
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 3 cut(s) 349, 1013, 1146
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 3 cut(s) 201, 532, 826
BstMBI GATC 3 cut(s) 198, 529, 823
BstMCI CGRYCG 1 cut(s) 1045
BstMWI GCNNNNNNNGC 7 cut(s) 116, 266, 652, 747, 762, 785, 938
BstNI CCWGG 3 cut(s) 164, 300, 909
BstSCI CCNGG 5 cut(s) 142, 162, 298, 511, 907
BstSFI CTRYAG 2 cut(s) 171, 979
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 953
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BtgI CCRYGG 1 cut(s) 1155
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 3 cut(s) 349, 1013, 1146
BtsI GCAGTG 1 cut(s) 919
BtsIMutI CAGTG 4 cut(s) 327, 423, 534, 919
Cac8I GCNNGC 3 cut(s) 16, 239, 502
CaiI CAGNNNCTG 1 cut(s) 744
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 364, 1023
CsiI ACCWGGT 1 cut(s) 298
Csp6I GTAC 3 cut(s) 21, 156, 479
CspCI CAANNNNNGTGG 2 cut(s) 1015, 1050
CviAII CATG 1 cut(s) 762
CviQI GTAC 3 cut(s) 21, 156, 479
DdeI CTNAG 3 cut(s) 81, 114, 1100
DpnI GATC 3 cut(s) 200, 531, 825
DpnII GATC 3 cut(s) 198, 529, 823
Eam1104I CTCTTC 2 cut(s) 908, 1089
EarI CTCTTC 2 cut(s) 908, 1089
EciI GGCGGA 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 429
Eco47I GGWCC 2 cut(s) 364, 1023
Eco57I CTGAAG 2 cut(s) 270, 564
Eco88I CYCGRG 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 162, 298, 907
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 1 cut(s) 765
FaqI GGGAC 2 cut(s) 377, 989
FatI CATG 1 cut(s) 761
Fnu4HI GCNGC 1 cut(s) 942
FokI GGATG 3 cut(s) 336, 1020, 1153
Fsp4HI GCNGC 1 cut(s) 942
FspBI CTAG 2 cut(s) 53, 992
GlaI GCGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 942
HapII CCGG 7 cut(s) 102, 144, 221, 238, 513, 1091, 1138
HhaI GCGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 765
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 3 cut(s) 42, 217, 539
HpaII CCGG 7 cut(s) 102, 144, 221, 238, 513, 1091, 1138
HphI GGTGA 1 cut(s) 288
Hpy166II GTNNAC 3 cut(s) 384, 437, 1026
Hpy188I TCNGA 4 cut(s) 47, 397, 529, 544
Hpy188III TCNNGA 5 cut(s) 186, 221, 1091, 1138, 1165
Hpy8I GTNNAC 3 cut(s) 384, 437, 1026
HpyAV CCTTC 2 cut(s) 663, 701
HpyCH4III ACNGT 6 cut(s) 160, 172, 418, 570, 681, 859
HpyCH4V TGCA 7 cut(s) 467, 494, 504, 662, 779, 917, 1011
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 266, 652, 747, 762, 785, 938
HpyF3I CTNAG 3 cut(s) 81, 114, 1100
Hsp92II CATG 1 cut(s) 765
HspAI GCGC 1 cut(s) 279
Kpn2I TCCGGA 3 cut(s) 220, 1090, 1137
KroI GCCGGC 1 cut(s) 237
KroNI GCCGGC 1 cut(s) 239
Kzo9I GATC 3 cut(s) 198, 529, 823
LguI GCTCTTC 1 cut(s) 1089
LmnI GCTCC 2 cut(s) 107, 146
Lsp1109I GCAGC 1 cut(s) 953
LweI GCATC 3 cut(s) 750, 978, 998
MabI ACCWGGT 1 cut(s) 298
MaeI CTAG 2 cut(s) 53, 992
MaeIII GTNAC 3 cut(s) 129, 418, 710
MalI GATC 3 cut(s) 200, 531, 825
MboI GATC 3 cut(s) 198, 529, 823
MboII GAAGA 8 cut(s) 263, 464, 467, 590, 596, 895, 1088, 1106
MfeI CAATTG 2 cut(s) 489, 657
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 9 cut(s) 203, 489, 587, 657, 836, 861, 951, 1086, 1119
MmeI TCCRAC 1 cut(s) 829
MnlI CCTC 8 cut(s) 121, 160, 304, 355, 442, 721, 807, 1162
MroI TCCGGA 3 cut(s) 220, 1090, 1137
MroNI GCCGGC 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 2 cut(s) 693, 954
MspI CCGG 7 cut(s) 102, 144, 221, 238, 513, 1091, 1138
MspR9I CCNGG 5 cut(s) 144, 164, 300, 513, 909
MunI CAATTG 2 cut(s) 489, 657
MvaI CCWGG 3 cut(s) 164, 300, 909
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 7 cut(s) 116, 266, 652, 747, 762, 785, 938
NaeI GCCGGC 1 cut(s) 239
NciI CCSGG 2 cut(s) 144, 513
NdeII GATC 3 cut(s) 198, 529, 823
NgoMIV GCCGGC 1 cut(s) 237
NlaIII CATG 1 cut(s) 765
NlaIV GGNNCC 6 cut(s) 109, 141, 148, 304, 365, 1024
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 418, 710
PciSI GCTCTTC 1 cut(s) 1089
PdiI GCCGGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 3 cut(s) 42, 217, 539
PflMI CCANNNNNTGG 1 cut(s) 314
PfoI TCCNGGA 3 cut(s) 142, 162, 511
PkrI GCNGC 1 cut(s) 943
PshBI ATTAAT 1 cut(s) 954
PsiI TTATAA 2 cut(s) 602, 888
Psp6I CCWGG 3 cut(s) 162, 298, 907
PspGI CCWGG 3 cut(s) 162, 298, 907
PspN4I GGNNCC 6 cut(s) 109, 141, 148, 304, 365, 1024
PspPI GGNCC 2 cut(s) 364, 1023
PstNI CAGNNNCTG 1 cut(s) 744
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 3 cut(s) 22, 157, 480
RsaNI GTAC 3 cut(s) 21, 156, 479
SapI GCTCTTC 1 cut(s) 1089
SaqAI TTAA 2 cut(s) 693, 954
SatI GCNGC 1 cut(s) 942
Sau3AI GATC 3 cut(s) 198, 529, 823
Sau96I GGNCC 2 cut(s) 364, 1023
ScrFI CCNGG 5 cut(s) 144, 164, 300, 513, 909
SduI GDGCHC 1 cut(s) 52
SexAI ACCWGGT 1 cut(s) 298
SfaNI GCATC 3 cut(s) 750, 978, 998
SfcI CTRYAG 2 cut(s) 171, 979
SinI GGWCC 2 cut(s) 364, 1023
SmlI CTYRAG 3 cut(s) 151, 284, 482
SmoI CTYRAG 3 cut(s) 151, 284, 482
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 9 cut(s) 203, 489, 587, 657, 836, 861, 951, 1086, 1119
SsiI CCGC 4 cut(s) 39, 105, 119, 1041
SspMI CTAG 2 cut(s) 53, 992
StyD4I CCNGG 5 cut(s) 142, 162, 298, 511, 907
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 6 cut(s) 160, 172, 418, 570, 681, 859
TasI AATT 9 cut(s) 203, 489, 587, 657, 836, 861, 951, 1086, 1119
TatI WGTACW 2 cut(s) 155, 478
TfiI GAWTC 3 cut(s) 42, 217, 539
Tru1I TTAA 2 cut(s) 693, 954
Tru9I TTAA 2 cut(s) 693, 954
TscAI CASTG 4 cut(s) 334, 423, 541, 919
TseFI GTSAC 2 cut(s) 418, 710
TseI GCWGC 1 cut(s) 941
Tsp45I GTSAC 2 cut(s) 418, 710
TspDTI ATGAA 4 cut(s) 47, 570, 597, 1102
TspGWI ACGGA 2 cut(s) 76, 1172
TspRI CASTG 4 cut(s) 334, 423, 541, 919
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 2 cut(s) 364, 1023
VspI ATTAAT 1 cut(s) 954
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 1 cut(s) 1086
XcmI CCANNNNNNNNNTGG 1 cut(s) 1033
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 2 cut(s) 53, 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.