RchiOBHm_Chr4g0434411

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004757
Physical Location & Seq
Forward (+)
58196329 .. 58200944
4616 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40286

Sequence Viewer

Length: 1284 bp
ATGACCATTTGGGCCGTCGGCTCGAATCTCTCGAGAACGAAAAGGTCGCGTGACTTTTGTACCGAACGAAAAAAATGGATGAAGGAGGAGGAGAAGAAAATGACAGAGGGTGCTTGTTGTACGAATGTGATGAATAGCGGAATCAGAGCACTAGTGGAAGCCATTCACTCTACTCCCACTCAGTCCGTCCTCTATCTCTCCGGCGGAGCCTCTCAGGCGGTGGCGTGGTTACTCTCCGTTCCCGGAGCCTCAAGTACAGTCCTGGAAACTGTAGTGCCTTATTCCCGAATGTCTATGATCCAATTACTCGGCAAGATTCCGGACAAGTTTTGTAGCCAGCACACTGCCGAAGAAATGGCTCTGTTGGCTTACAATCGCGCTCTCAAGCTCTCCTCACCAGGTTCCCCAGTTCTTGGTGTGGGTTTCACTGGTTCTTTGGCTAGCTCACGTCCAAAGCTTGGGGACCACAGGTTTTATTTGTCAACAAGGACATCTGACAGACTCTCGGTATCAACAGTGAACCTTTCCAAGGGTTTACGAAACCGAGAGGAAGAAGATATGGTTGCAAGTCATCTTGTACTCAAGGCAATTGCAAATGCGTGCAAAGTTCCCGGAACATTTGTTTCAGATCTCACTGAATCTGAAGTGCCTGATGAATGTGAAAAACAGTTCAGCGAAGATGAAGAATTACAGCAACTTATAAATGGGCAAATATGCTTCAAGGTTTATCCCTTTTCAAGTGAGCCATCTGTGCCAATTGCAGAAAGAAGGATAATACTGTCTGGTTCTTTTAATCCATTACACGAAGGTCACTTCAAGCTATTGGAGGTTGCTTCCAGCATCTGTGGCGACGGCTACCCATGCTTTGAACTATCTGCAATCAATGCTGACAAACCTCCACTTTCGATATCACAAATCAAAGATCGTGTCGAGCAATTTGAAAAAGTTGGAAAAACGGTAATTATATCCAATCAGCCATATTTTTATAAGAAAGCTGAACTCTTCCCAGGCAGTGCATTTGTGATTGGTGCTGACACAGCAGCAAGGCTGATTAATCCCAAATACTATGATGGGGACTATAGAAAGATGCTAGATATACTTCTTGGATGCAAGAAAACAGGGTCCACTTTTCTTGTGGGCGGTCGTAATGTAGATGGTGTTTTCAAGGTGCTGGAAGATTTTGAAATTCCCGAAGAGCTAAGAGATATGTTCATTTCAATTCCACCAGAGAAGTTCCGGATGGATATATCCTCCACGGAAATCAGGAAAAAACTTGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

427

Amino Acids

47.27

Weight (kDa)

7.51

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 260 - 423 1.3e-08 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 701, 987
AccB7I CCANNNNNTGG 2 cut(s) 413, 458
AccII CGCG 2 cut(s) 49, 378
AccIII TCCGGA 2 cut(s) 319, 1236
AciI CCGC 4 cut(s) 138, 204, 218, 1140
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 1 cut(s) 1185
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 4 cut(s) 61, 121, 256, 579
AfiI CCNNNNNNNGG 3 cut(s) 413, 458, 529
AgsI TTSAA 8 cut(s) 721, 738, 817, 869, 941, 1165, 1184, 1218
AhlI ACTAGT 1 cut(s) 151
AjiI CACGTC 1 cut(s) 449
AjnI CCWGG 3 cut(s) 261, 397, 1006
AluBI AGCT 6 cut(s) 388, 444, 457, 820, 995, 1198
AluI AGCT 6 cut(s) 388, 444, 457, 820, 995, 1198
Alw21I GWGCWC 1 cut(s) 151
AlwI GGATC 1 cut(s) 292
AlwNI CAGNNNCTG 1 cut(s) 843
Ama87I CYCGRG 1 cut(s) 31
Aor13HI TCCGGA 2 cut(s) 319, 1236
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 1040
ApoI RAATTY 1 cut(s) 1185
ArsI GACNNNNNNTTYG 2 cut(s) 912, 944
AseI ATTAAT 1 cut(s) 1053
Asp700I GAANNNNTTC 1 cut(s) 162
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 3 cut(s) 12, 463, 1122
AsuC2I CCSGG 2 cut(s) 243, 612
AsuHPI GGTGA 1 cut(s) 387
AsuNHI GCTAGC 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 31
AvaII GGWCC 2 cut(s) 463, 1122
BaeI ACNNNNGTAYC 2 cut(s) 43, 76
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 1052
BccI CCATC 4 cut(s) 754, 1064, 1148, 1234
BceAI ACGGC 1 cut(s) 868
BciT130I CCWGG 3 cut(s) 263, 399, 1008
BcnI CCSGG 2 cut(s) 243, 612
BcuI ACTAGT 1 cut(s) 151
BfaI CTAG 3 cut(s) 152, 441, 1091
BfmI CTRYAG 2 cut(s) 270, 1078
BglI GCCNNNNNGGC 1 cut(s) 215
BglII AGATCT 1 cut(s) 628
BisI GCNGC 1 cut(s) 1041
BlsI GCNGC 1 cut(s) 1042
Bme1390I CCNGG 5 cut(s) 243, 263, 399, 612, 1008
Bme18I GGWCC 2 cut(s) 463, 1122
BmeT110I CYCGRG 1 cut(s) 31
BmgBI CACGTC 1 cut(s) 449
BmgT120I GGNCC 3 cut(s) 12, 463, 1122
BmiI GGNNCC 5 cut(s) 208, 247, 403, 464, 1123
BmrFI CCNGG 5 cut(s) 243, 263, 399, 612, 1008
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 3 cut(s) 849, 1077, 1097
BmtI GCTAGC 1 cut(s) 444
BmuI ACTGGG 1 cut(s) 401
BpuEI CTTGAG 3 cut(s) 235, 368, 566
BpuMI CCSGG 2 cut(s) 243, 612
BsaJI CCNNGG 3 cut(s) 528, 1006, 1254
BsaWI WCCGGW 2 cut(s) 319, 1236
Bsc4I CCNNNNNNNGG 3 cut(s) 413, 458, 529
Bse1I ACTGG 2 cut(s) 407, 433
BseAI TCCGGA 2 cut(s) 319, 1236
BseBI CCWGG 3 cut(s) 263, 399, 1008
BseDI CCNNGG 3 cut(s) 528, 1006, 1254
BseGI GGATG 3 cut(s) 84, 1112, 1245
BseLI CCNNNNNNNGG 3 cut(s) 413, 458, 529
BseMII CTCAG 2 cut(s) 194, 227
BseNI ACTGG 2 cut(s) 407, 433
BseRI GAGGAG 3 cut(s) 101, 104, 382
BseXI GCAGC 1 cut(s) 1052
Bsh1236I CGCG 2 cut(s) 49, 378
Bsh1285I CGRYCG 1 cut(s) 1144
BshFI GGCC 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 1144
BsiHKAI GWGCWC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 5 cut(s) 201, 243, 320, 612, 1237
BslFI GGGAC 2 cut(s) 476, 1088
BslI CCNNNNNNNGG 3 cut(s) 413, 458, 529
BsmFI GGGAC 2 cut(s) 476, 1088
BsnI GGCC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 151
Bsp13I TCCGGA 2 cut(s) 319, 1236
Bsp143I GATC 3 cut(s) 297, 628, 922
BspACI CCGC 4 cut(s) 138, 204, 218, 1140
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 2 cut(s) 193, 226
BspEI TCCGGA 2 cut(s) 319, 1236
BspFNI CGCG 2 cut(s) 49, 378
BspLI GGNNCC 5 cut(s) 208, 247, 403, 464, 1123
BspOI GCTAGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 1188
BsrI ACTGG 2 cut(s) 407, 433
BssECI CCNNGG 3 cut(s) 528, 1006, 1254
BssMI GATC 3 cut(s) 297, 628, 922
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 3 cut(s) 263, 399, 1008
Bst4CI ACNGT 6 cut(s) 259, 271, 517, 669, 780, 958
Bst6I CTCTTC 2 cut(s) 1007, 1188
BstAPI GCANNNNNTGC 1 cut(s) 884
BstC8I GCNNGC 3 cut(s) 338, 442, 601
BstDEI CTNAG 3 cut(s) 180, 213, 1199
BstDSI CCRYGG 1 cut(s) 1254
BstENI CCTNNNNNAGG 1 cut(s) 527
BstF5I GGATG 3 cut(s) 84, 1112, 1245
BstFNI CGCG 2 cut(s) 49, 378
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 3 cut(s) 300, 631, 925
BstMBI GATC 3 cut(s) 297, 628, 922
BstMCI CGRYCG 1 cut(s) 1144
BstMWI GCNNNNNNNGC 7 cut(s) 215, 365, 751, 846, 861, 884, 1037
BstNI CCWGG 3 cut(s) 263, 399, 1008
BstSCI CCNGG 5 cut(s) 241, 261, 397, 610, 1006
BstSFI CTRYAG 2 cut(s) 270, 1078
BstUI CGCG 2 cut(s) 49, 378
BstV1I GCAGC 1 cut(s) 1052
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
BsuRI GGCC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 1254
BtrI CACGTC 1 cut(s) 449
BtsCI GGATG 3 cut(s) 84, 1112, 1245
BtsI GCAGTG 2 cut(s) 342, 1018
BtsIMutI CAGTG 5 cut(s) 342, 426, 522, 633, 1018
Cac8I GCNNGC 3 cut(s) 338, 442, 601
CaiI CAGNNNCTG 1 cut(s) 843
CfoI GCGC 1 cut(s) 380
Cfr13I GGNCC 3 cut(s) 12, 463, 1122
CsiI ACCWGGT 1 cut(s) 397
Csp6I GTAC 4 cut(s) 60, 120, 255, 578
CspCI CAANNNNNGTGG 2 cut(s) 1114, 1149
CviAII CATG 1 cut(s) 861
CviQI GTAC 4 cut(s) 60, 120, 255, 578
DdeI CTNAG 3 cut(s) 180, 213, 1199
DpnI GATC 3 cut(s) 299, 630, 924
DpnII GATC 3 cut(s) 297, 628, 922
Eam1104I CTCTTC 2 cut(s) 1007, 1188
EarI CTCTTC 2 cut(s) 1007, 1188
EciI GGCGGA 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 528
Eco32I GATATC 1 cut(s) 909
Eco47I GGWCC 2 cut(s) 463, 1122
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 31
EcoNI CCTNNNNNAGG 1 cut(s) 527
EcoRII CCWGG 3 cut(s) 261, 397, 1006
EcoRV GATATC 1 cut(s) 909
EcoT14I CCWWGG 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 1 cut(s) 864
FaqI GGGAC 2 cut(s) 476, 1088
FatI CATG 1 cut(s) 860
Fnu4HI GCNGC 1 cut(s) 1041
FokI GGATG 3 cut(s) 91, 1119, 1252
Fsp4HI GCNGC 1 cut(s) 1041
FspBI CTAG 3 cut(s) 152, 441, 1091
GlaI GCGC 1 cut(s) 379
GluI GCNGC 1 cut(s) 1041
HaeIII GGCC 1 cut(s) 14
HapII CCGG 5 cut(s) 201, 243, 320, 612, 1237
HhaI GCGC 1 cut(s) 380
Hin1II CATG 1 cut(s) 864
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HincII GTYRAC 1 cut(s) 483
HindII GTYRAC 1 cut(s) 483
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 5 cut(s) 25, 141, 316, 501, 638
HpaII CCGG 5 cut(s) 201, 243, 320, 612, 1237
HphI GGTGA 1 cut(s) 387
Hpy166II GTNNAC 4 cut(s) 483, 520, 536, 1125
Hpy188I TCNGA 4 cut(s) 146, 496, 628, 643
Hpy188III TCNNGA 7 cut(s) 31, 33, 285, 320, 1190, 1237, 1264
Hpy8I GTNNAC 4 cut(s) 483, 520, 536, 1125
Hpy99I CGWCG 2 cut(s) 20, 854
HpyAV CCTTC 3 cut(s) 76, 762, 800
HpyCH4III ACNGT 6 cut(s) 259, 271, 517, 669, 780, 958
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 7 cut(s) 566, 593, 603, 761, 878, 1016, 1110
HpyF10VI GCNNNNNNNGC 7 cut(s) 215, 365, 751, 846, 861, 884, 1037
HpyF3I CTNAG 3 cut(s) 180, 213, 1199
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 1 cut(s) 864
HspAI GCGC 1 cut(s) 378
Kpn2I TCCGGA 2 cut(s) 319, 1236
Kzo9I GATC 3 cut(s) 297, 628, 922
LguI GCTCTTC 1 cut(s) 1188
LmnI GCTCC 2 cut(s) 206, 245
Lsp1109I GCAGC 1 cut(s) 1052
LweI GCATC 3 cut(s) 849, 1077, 1097
MabI ACCWGGT 1 cut(s) 397
MaeI CTAG 3 cut(s) 152, 441, 1091
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 3 cut(s) 50, 228, 809
MalI GATC 3 cut(s) 299, 630, 924
MboI GATC 3 cut(s) 297, 628, 922
MboII GAAGA 9 cut(s) 106, 362, 563, 566, 689, 695, 994, 1187, 1205
MfeI CAATTG 2 cut(s) 588, 756
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 8 cut(s) 302, 588, 686, 756, 935, 960, 1185, 1218
MlyI GAGTC 1 cut(s) 495
MmeI TCCRAC 1 cut(s) 928
MroI TCCGGA 2 cut(s) 319, 1236
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 2 cut(s) 792, 1053
MspI CCGG 5 cut(s) 201, 243, 320, 612, 1237
MspR9I CCNGG 5 cut(s) 243, 263, 399, 612, 1008
MunI CAATTG 2 cut(s) 588, 756
MvaI CCWGG 3 cut(s) 263, 399, 1008
MvnI CGCG 2 cut(s) 49, 378
MwoI GCNNNNNNNGC 7 cut(s) 215, 365, 751, 846, 861, 884, 1037
NciI CCSGG 2 cut(s) 243, 612
NdeII GATC 3 cut(s) 297, 628, 922
NheI GCTAGC 1 cut(s) 440
NlaIII CATG 1 cut(s) 864
NlaIV GGNNCC 5 cut(s) 208, 247, 403, 464, 1123
NmeAIII GCCGAG 1 cut(s) 288
NmuCI GTSAC 2 cut(s) 50, 809
PaeR7I CTCGAG 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 1188
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 4 cut(s) 25, 141, 316, 638
PflMI CCANNNNNTGG 2 cut(s) 413, 458
PfoI TCCNGGA 3 cut(s) 241, 261, 610
PkrI GCNGC 1 cut(s) 1042
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
PshBI ATTAAT 1 cut(s) 1053
PsiI TTATAA 2 cut(s) 701, 987
Psp6I CCWGG 3 cut(s) 261, 397, 1006
PspGI CCWGG 3 cut(s) 261, 397, 1006
PspN4I GGNNCC 5 cut(s) 208, 247, 403, 464, 1123
PspPI GGNCC 3 cut(s) 12, 463, 1122
PstNI CAGNNNCTG 1 cut(s) 843
PsuI RGATCY 1 cut(s) 628
RsaI GTAC 4 cut(s) 61, 121, 256, 579
RsaNI GTAC 4 cut(s) 60, 120, 255, 578
SapI GCTCTTC 1 cut(s) 1188
SaqAI TTAA 2 cut(s) 792, 1053
SatI GCNGC 1 cut(s) 1041
Sau3AI GATC 3 cut(s) 297, 628, 922
Sau96I GGNCC 3 cut(s) 12, 463, 1122
SchI GAGTC 1 cut(s) 495
ScrFI CCNGG 5 cut(s) 243, 263, 399, 612, 1008
SduI GDGCHC 1 cut(s) 151
SexAI ACCWGGT 1 cut(s) 397
SfaNI GCATC 3 cut(s) 849, 1077, 1097
SfcI CTRYAG 2 cut(s) 270, 1078
Sfr274I CTCGAG 1 cut(s) 31
SinI GGWCC 2 cut(s) 463, 1122
SlaI CTCGAG 1 cut(s) 31
SmlI CTYRAG 4 cut(s) 31, 250, 383, 581
SmoI CTYRAG 4 cut(s) 31, 250, 383, 581
SpeI ACTAGT 1 cut(s) 151
Sse9I AATT 8 cut(s) 302, 588, 686, 756, 935, 960, 1185, 1218
SsiI CCGC 4 cut(s) 138, 204, 218, 1140
SspMI CTAG 3 cut(s) 152, 441, 1091
StyD4I CCNGG 5 cut(s) 241, 261, 397, 610, 1006
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 6 cut(s) 259, 271, 517, 669, 780, 958
TaiI ACGT 1 cut(s) 451
TaqI TCGA 4 cut(s) 23, 32, 905, 930
TasI AATT 8 cut(s) 302, 588, 686, 756, 935, 960, 1185, 1218
TatI WGTACW 2 cut(s) 254, 577
TfiI GAWTC 4 cut(s) 25, 141, 316, 638
Tru1I TTAA 2 cut(s) 792, 1053
Tru9I TTAA 2 cut(s) 792, 1053
TscAI CASTG 5 cut(s) 349, 433, 522, 640, 1018
TseFI GTSAC 2 cut(s) 50, 809
TseI GCWGC 1 cut(s) 1040
Tsp45I GTSAC 2 cut(s) 50, 809
TspDTI ATGAA 5 cut(s) 95, 146, 669, 696, 1201
TspGWI ACGGA 3 cut(s) 175, 226, 1271
TspRI CASTG 5 cut(s) 349, 433, 522, 640, 1018
Van91I CCANNNNNTGG 2 cut(s) 413, 458
VpaK11BI GGWCC 2 cut(s) 463, 1122
VspI ATTAAT 1 cut(s) 1053
XagI CCTNNNNNAGG 1 cut(s) 527
XapI RAATTY 1 cut(s) 1185
XcmI CCANNNNNNNNNTGG 1 cut(s) 1132
XhoI CTCGAG 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 3 cut(s) 152, 441, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.