Rw4G028790

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004757
Physical Location & Seq
Forward (+)
55400400 .. 55404519
4120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G028790.1

Sequence Viewer

Length: 1185 bp
ATGACAGAGGGTGGTTGTTGTCCGAATGTGATGAATGGCGGAATCAGGGCACTAGTGGAAGCGATTCACTCTACTCCCACTCAGTCCGTTCTCTATCTCTCCGGCGGAGCCTCTCAGGCGGTGGCTTGGTTACTCTCCGTTCCCGGAGCTTCAAGTACAGTCCTGGAAACTGTAGTGCCTTATTCCCGAATGTCTATGATCCAATTACTAGGCAAGATTCCGGACAATTTTTGTAGCCAGCACACTGCTGAAGAAATGGCTCTGTTGGCTTACAATCGCGCTCTCAAGCTCTCCTCACCAGGTTCCCCAGTTCTTGGTGTGGGTTTCACTGGTTCTTTGGTTACCTCACATCCAAAGCTCGGGGACCACAGGTTTTATTTGTCAACAAGGACATCTGACAGACTCTCGGTATCGACAGTGACCCTTTCCAAGGGTTTACGAAACCGAGAGGAAGAAGATATGGTTGCAAGTCGTCTTGTACTCAAGGCAATTGCAAATGCGTGCAAAGTTCCGGGAACATTTGTTTCAGATCTCACTGGATCTGAAGTGCCTGATGAATGTGAAAAACAGTTCAGCGAAGATGAAGAATTAGAGCAACTTATAAATGGGCAAATATGCTTCAAGGTTTATCCCTTTTCAAGTGAGCCATCTGTGCCAATTGCAGAAAGAAGGATAATACTGTCTGGTTCTTTTAATCCATTACACGAAGGTCACTTCAAGCTATTGGAGGTTGCTTCCAGCATCTGTGGCGACGGCTACCCATGCTTTGAACTATCTGCAATCAATGCTGACAAACCTCCACTTTCGATATCACAAATCAAAGATCGTGTCAAGCAATTTGAAAAAATTGGAAAAACGGTAATTATATCCAATCAGCCATATTTTTATAAGAAAGCTGAACTCTTCCCAGGCAGTGCATTTGTGATTGGTGCTGACACAGCAGCAAGGCTGATTAATCCCAAATACTATGATGGGGACTATAGAACGATGCTAGATATACTTCTTGGATGCAAGAAAACAGGGTCCACTTTTCTTGTGGGCGGTCGTAATGTAGATGGTGTTTTCAAGGTGCTGGAAGATTTTGAAATTCCGGAAGAGCTAAGAGATATGTTCATTCCAATTCCACCAGAGAAGTTCCGGATGGATATATCCTCCACGGAAATCAGGAAAAAACTTGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

394

Amino Acids

43.12

Weight (kDa)

5.97

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 227 - 390 1.1e-08 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 602, 888
AccB7I CCANNNNNTGG 1 cut(s) 314
AccII CGCG 1 cut(s) 279
AccIII TCCGGA 3 cut(s) 220, 1090, 1137
AciI CCGC 4 cut(s) 39, 105, 119, 1041
AclWI GGATC 2 cut(s) 193, 547
AcsI RAATTY 1 cut(s) 1086
AcuI CTGAAG 2 cut(s) 270, 564
AfaI GTAC 2 cut(s) 157, 480
AfiI CCNNNNNNNGG 3 cut(s) 314, 359, 430
AgsI TTSAA 8 cut(s) 153, 622, 639, 718, 770, 842, 1066, 1085
AhlI ACTAGT 1 cut(s) 52
AjnI CCWGG 3 cut(s) 162, 298, 907
AluBI AGCT 6 cut(s) 149, 289, 358, 721, 896, 1099
AluI AGCT 6 cut(s) 149, 289, 358, 721, 896, 1099
AlwI GGATC 2 cut(s) 193, 547
AlwNI CAGNNNCTG 1 cut(s) 744
Ama87I CYCGRG 1 cut(s) 359
Aor13HI TCCGGA 3 cut(s) 220, 1090, 1137
ApeKI GCWGC 1 cut(s) 941
ApoI RAATTY 1 cut(s) 1086
ArsI GACNNNNNNTTYG 2 cut(s) 813, 845
AseI ATTAAT 1 cut(s) 954
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 364, 1023
AsuC2I CCSGG 2 cut(s) 144, 513
AsuHPI GGTGA 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 364, 1023
BaeGI GKGCMC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 953
BccI CCATC 4 cut(s) 655, 965, 1049, 1135
BceAI ACGGC 1 cut(s) 769
BciT130I CCWGG 3 cut(s) 164, 300, 909
BcnI CCSGG 2 cut(s) 144, 513
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 3 cut(s) 53, 209, 992
BfmI CTRYAG 2 cut(s) 171, 979
BglI GCCNNNNNGGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 529
BisI GCNGC 1 cut(s) 942
BlsI GCNGC 1 cut(s) 943
Bme1390I CCNGG 5 cut(s) 144, 164, 300, 513, 909
Bme18I GGWCC 2 cut(s) 364, 1023
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 364, 1023
BmiI GGNNCC 4 cut(s) 109, 304, 365, 1024
BmrFI CCNGG 5 cut(s) 144, 164, 300, 513, 909
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 3 cut(s) 750, 978, 998
BmuI ACTGGG 1 cut(s) 302
BpuEI CTTGAG 2 cut(s) 269, 467
BpuMI CCSGG 2 cut(s) 144, 513
BsaJI CCNNGG 3 cut(s) 429, 907, 1155
BsaWI WCCGGW 3 cut(s) 220, 1090, 1137
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 359, 430
Bse1I ACTGG 3 cut(s) 308, 334, 541
BseAI TCCGGA 3 cut(s) 220, 1090, 1137
BseBI CCWGG 3 cut(s) 164, 300, 909
BseDI CCNNGG 3 cut(s) 429, 907, 1155
BseGI GGATG 3 cut(s) 349, 1013, 1146
BseLI CCNNNNNNNGG 3 cut(s) 314, 359, 430
BseMII CTCAG 2 cut(s) 95, 128
BseNI ACTGG 3 cut(s) 308, 334, 541
BseRI GAGGAG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 1 cut(s) 953
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 1045
BsiEI CGRYCG 1 cut(s) 1045
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 6 cut(s) 102, 144, 221, 512, 1091, 1138
BslFI GGGAC 2 cut(s) 377, 989
BslI CCNNNNNNNGG 3 cut(s) 314, 359, 430
BsmFI GGGAC 2 cut(s) 377, 989
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 52
Bsp13I TCCGGA 3 cut(s) 220, 1090, 1137
Bsp143I GATC 4 cut(s) 198, 529, 539, 823
BspACI CCGC 4 cut(s) 39, 105, 119, 1041
BspCNI CTCAG 2 cut(s) 94, 127
BspEI TCCGGA 3 cut(s) 220, 1090, 1137
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 4 cut(s) 109, 304, 365, 1024
BspPI GGATC 2 cut(s) 193, 547
BspQI GCTCTTC 1 cut(s) 1089
BsrI ACTGG 3 cut(s) 308, 334, 541
BssECI CCNNGG 3 cut(s) 429, 907, 1155
BssMI GATC 4 cut(s) 198, 529, 539, 823
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 3 cut(s) 164, 300, 909
Bst4CI ACNGT 6 cut(s) 160, 172, 418, 570, 681, 859
Bst6I CTCTTC 2 cut(s) 908, 1089
BstAPI GCANNNNNTGC 1 cut(s) 785
BstC8I GCNNGC 2 cut(s) 239, 502
BstDEI CTNAG 3 cut(s) 81, 114, 1100
BstDSI CCRYGG 1 cut(s) 1155
BstEII GGTNACC 1 cut(s) 340
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 3 cut(s) 349, 1013, 1146
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 4 cut(s) 201, 532, 542, 826
BstMBI GATC 4 cut(s) 198, 529, 539, 823
BstMCI CGRYCG 1 cut(s) 1045
BstMWI GCNNNNNNNGC 7 cut(s) 116, 266, 652, 747, 762, 785, 938
BstNI CCWGG 3 cut(s) 164, 300, 909
BstPI GGTNACC 1 cut(s) 340
BstSCI CCNGG 5 cut(s) 142, 162, 298, 511, 907
BstSFI CTRYAG 2 cut(s) 171, 979
BstSLI GKGCMC 1 cut(s) 52
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 953
BstX2I RGATCY 2 cut(s) 529, 539
BstYI RGATCY 2 cut(s) 529, 539
BtgI CCRYGG 1 cut(s) 1155
BtsCI GGATG 3 cut(s) 349, 1013, 1146
BtsI GCAGTG 2 cut(s) 243, 919
BtsIMutI CAGTG 5 cut(s) 243, 327, 423, 534, 919
Cac8I GCNNGC 2 cut(s) 239, 502
CaiI CAGNNNCTG 1 cut(s) 744
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 364, 1023
CsiI ACCWGGT 1 cut(s) 298
Csp6I GTAC 2 cut(s) 156, 479
CspCI CAANNNNNGTGG 2 cut(s) 1015, 1050
CviAII CATG 1 cut(s) 762
CviQI GTAC 2 cut(s) 156, 479
DdeI CTNAG 3 cut(s) 81, 114, 1100
DpnI GATC 4 cut(s) 200, 531, 541, 825
DpnII GATC 4 cut(s) 198, 529, 539, 823
Eam1104I CTCTTC 2 cut(s) 908, 1089
EarI CTCTTC 2 cut(s) 908, 1089
EciI GGCGGA 2 cut(s) 54, 120
Eco130I CCWWGG 1 cut(s) 429
Eco32I GATATC 1 cut(s) 810
Eco47I GGWCC 2 cut(s) 364, 1023
Eco57I CTGAAG 2 cut(s) 270, 564
Eco88I CYCGRG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoO65I GGTNACC 1 cut(s) 340
EcoRII CCWGG 3 cut(s) 162, 298, 907
EcoRV GATATC 1 cut(s) 810
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 1 cut(s) 765
FaqI GGGAC 2 cut(s) 377, 989
FatI CATG 1 cut(s) 761
Fnu4HI GCNGC 1 cut(s) 942
FokI GGATG 3 cut(s) 336, 1020, 1153
Fsp4HI GCNGC 1 cut(s) 942
FspBI CTAG 3 cut(s) 53, 209, 992
GlaI GCGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 942
HapII CCGG 6 cut(s) 102, 144, 221, 512, 1091, 1138
HhaI GCGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 765
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 4 cut(s) 42, 64, 217, 402
HpaII CCGG 6 cut(s) 102, 144, 221, 512, 1091, 1138
HphI GGTGA 1 cut(s) 288
Hpy166II GTNNAC 3 cut(s) 384, 437, 1026
Hpy188I TCNGA 4 cut(s) 24, 397, 529, 544
Hpy188III TCNNGA 5 cut(s) 186, 221, 1091, 1138, 1165
Hpy8I GTNNAC 3 cut(s) 384, 437, 1026
Hpy99I CGWCG 1 cut(s) 755
HpyAV CCTTC 2 cut(s) 663, 701
HpyCH4III ACNGT 6 cut(s) 160, 172, 418, 570, 681, 859
HpyCH4V TGCA 7 cut(s) 467, 494, 504, 662, 779, 917, 1011
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 266, 652, 747, 762, 785, 938
HpyF3I CTNAG 3 cut(s) 81, 114, 1100
Hsp92II CATG 1 cut(s) 765
HspAI GCGC 1 cut(s) 279
Kpn2I TCCGGA 3 cut(s) 220, 1090, 1137
Kzo9I GATC 4 cut(s) 198, 529, 539, 823
LguI GCTCTTC 1 cut(s) 1089
LmnI GCTCC 2 cut(s) 107, 146
Lsp1109I GCAGC 1 cut(s) 953
LweI GCATC 3 cut(s) 750, 978, 998
MabI ACCWGGT 1 cut(s) 298
MaeI CTAG 3 cut(s) 53, 209, 992
MaeIII GTNAC 4 cut(s) 129, 340, 418, 710
MalI GATC 4 cut(s) 200, 531, 541, 825
MboI GATC 4 cut(s) 198, 529, 539, 823
MboII GAAGA 8 cut(s) 263, 464, 467, 590, 596, 895, 1088, 1106
MfeI CAATTG 2 cut(s) 489, 657
MflI RGATCY 2 cut(s) 529, 539
MhlI GDGCHC 1 cut(s) 52
MlyI GAGTC 1 cut(s) 396
MnlI CCTC 7 cut(s) 121, 304, 355, 442, 721, 807, 1162
MroI TCCGGA 3 cut(s) 220, 1090, 1137
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 2 cut(s) 693, 954
MspI CCGG 6 cut(s) 102, 144, 221, 512, 1091, 1138
MspR9I CCNGG 5 cut(s) 144, 164, 300, 513, 909
MunI CAATTG 2 cut(s) 489, 657
MvaI CCWGG 3 cut(s) 164, 300, 909
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 7 cut(s) 116, 266, 652, 747, 762, 785, 938
NciI CCSGG 2 cut(s) 144, 513
NdeII GATC 4 cut(s) 198, 529, 539, 823
NlaIII CATG 1 cut(s) 765
NlaIV GGNNCC 4 cut(s) 109, 304, 365, 1024
NmuCI GTSAC 2 cut(s) 418, 710
PciSI GCTCTTC 1 cut(s) 1089
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 3 cut(s) 42, 64, 217
PflMI CCANNNNNTGG 1 cut(s) 314
PfoI TCCNGGA 3 cut(s) 142, 162, 511
PkrI GCNGC 1 cut(s) 943
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PshBI ATTAAT 1 cut(s) 954
PsiI TTATAA 2 cut(s) 602, 888
Psp6I CCWGG 3 cut(s) 162, 298, 907
PspEI GGTNACC 1 cut(s) 340
PspGI CCWGG 3 cut(s) 162, 298, 907
PspN4I GGNNCC 4 cut(s) 109, 304, 365, 1024
PspPI GGNCC 2 cut(s) 364, 1023
PstNI CAGNNNCTG 1 cut(s) 744
PsuI RGATCY 2 cut(s) 529, 539
RsaI GTAC 2 cut(s) 157, 480
RsaNI GTAC 2 cut(s) 156, 479
SapI GCTCTTC 1 cut(s) 1089
SaqAI TTAA 2 cut(s) 693, 954
SatI GCNGC 1 cut(s) 942
Sau3AI GATC 4 cut(s) 198, 529, 539, 823
Sau96I GGNCC 2 cut(s) 364, 1023
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 5 cut(s) 144, 164, 300, 513, 909
SduI GDGCHC 1 cut(s) 52
SexAI ACCWGGT 1 cut(s) 298
SfaNI GCATC 3 cut(s) 750, 978, 998
SfcI CTRYAG 2 cut(s) 171, 979
SinI GGWCC 2 cut(s) 364, 1023
SmlI CTYRAG 2 cut(s) 284, 482
SmoI CTYRAG 2 cut(s) 284, 482
SpeI ACTAGT 1 cut(s) 52
SsiI CCGC 4 cut(s) 39, 105, 119, 1041
SspMI CTAG 3 cut(s) 53, 209, 992
StyD4I CCNGG 5 cut(s) 142, 162, 298, 511, 907
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 6 cut(s) 160, 172, 418, 570, 681, 859
TaqI TCGA 2 cut(s) 413, 806
TatI WGTACW 2 cut(s) 155, 478
TfiI GAWTC 3 cut(s) 42, 64, 217
Tru1I TTAA 2 cut(s) 693, 954
Tru9I TTAA 2 cut(s) 693, 954
TscAI CASTG 5 cut(s) 250, 334, 423, 541, 919
TseFI GTSAC 2 cut(s) 418, 710
TseI GCWGC 1 cut(s) 941
Tsp45I GTSAC 2 cut(s) 418, 710
TspDTI ATGAA 4 cut(s) 47, 570, 597, 1102
TspGWI ACGGA 3 cut(s) 76, 127, 1172
TspRI CASTG 5 cut(s) 250, 334, 423, 541, 919
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 2 cut(s) 364, 1023
VspI ATTAAT 1 cut(s) 954
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 1 cut(s) 1086
XcmI CCANNNNNNNNNTGG 1 cut(s) 1033
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 3 cut(s) 53, 209, 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.