Rh4CG355000

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004757
Physical Location & Seq
Forward (+)
61096484 .. 61101859
5376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG355000.1

Sequence Viewer

Length: 891 bp
ATGTTATCGTCCTTGCTGTCTCTTATTTGTTGCCTTAGTTTGTCTGTGGTCAATGTGATTTTATTTGTGATCTATAGGTTTTATTTGTCAACAAGGACATCTGACAGACTCTCGGTATCGACAGTGACCCTTTCCAAGGGTTTACGAAACCGAGAGGAAGAAGATATGGTTGCAAGTCATCTTGTACTCAAGGCAATTGCAAATGCGTGCAAAGTTCCCGGAACATTTGTTTCAGATCTCACTGAATCTGAAGTGCCTGATGAATGTGAAAAACAGTTCAGCGAAGATGAAGAATTAGAGCAACTTATAAATGGGCAAATATGCTTCAAGGTTTATCCCTTTTCAAGTGAGCCATCTGTGCCAATTGCAGAAAGAAGGATAATACTGTCTGGTTCTTTTAATCCATTACACGAAGGTCACTTCAAGCTATTGGAGGTTGCTTCCAGCATCTGTGGCGACGGCTACCCATGCTTTGAACTATCTGCAATCAATGCTGACAAACCTCCACTTTCGATATCACAAATCAAAGATCGTGTCAAGCAATTTCAAAAAGTTGGAAAAACGGTAATTATATCCAATCAGCCATATTTTTATAAGAAAGCTGAACTCTTCCCAGGCAGTGCATTTGTGATTGGTGCTGACACAGCAGCAAGGCTGGTTAATCCCAAATACTATGACGGGGACTATAGAAAGATGCTAGATATACTTCTTGGATGCAAGAAAACAGGGTCCACTTTCCTTGTGGGCGGTCGTAATGTAGATGGTGTTTTCAAGGTGCTGGAAGATTTTGAAATTCCTGAAGAGCTAAGAGATATGTTCATTTCAATTCCACCAGAGAAGTTCCGGATGGATATATCCTCCACGGAAATCAGGAAAAAACTTGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

296

Amino Acids

33.12

Weight (kDa)

5.8

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 129 - 292 7.6e-09 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 308, 594
AccIII TCCGGA 1 cut(s) 843
AciI CCGC 1 cut(s) 747
AcsI RAATTY 1 cut(s) 792
AcuI CTGAAG 2 cut(s) 270, 819
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 8 cut(s) 328, 345, 424, 476, 548, 772, 791, 825
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 3 cut(s) 427, 602, 805
AluI AGCT 3 cut(s) 427, 602, 805
Alw26I GTCTC 1 cut(s) 24
AlwNI CAGNNNCTG 1 cut(s) 450
Aor13HI TCCGGA 1 cut(s) 843
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 1 cut(s) 792
ArsI GACNNNNNNTTYG 2 cut(s) 519, 551
AspS9I GGNCC 1 cut(s) 729
AsuC2I CCSGG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 729
BbvI GCAGC 1 cut(s) 659
BccI CCATC 3 cut(s) 361, 755, 841
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 615
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 698
BfmI CTRYAG 2 cut(s) 73, 685
BglII AGATCT 1 cut(s) 235
BisI GCNGC 1 cut(s) 648
BlsI GCNGC 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 219, 615
Bme18I GGWCC 1 cut(s) 729
BmgT120I GGNCC 1 cut(s) 729
BmiI GGNNCC 1 cut(s) 730
BmrFI CCNGG 2 cut(s) 219, 615
BmsI GCATC 3 cut(s) 456, 684, 704
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 135, 613, 861
BsaWI WCCGGW 1 cut(s) 843
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseAI TCCGGA 1 cut(s) 843
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 3 cut(s) 135, 613, 861
BseGI GGATG 2 cut(s) 719, 852
BseLI CCNNNNNNNGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 659
Bsh1285I CGRYCG 1 cut(s) 751
BsiEI CGRYCG 1 cut(s) 751
BsiSI CCGG 2 cut(s) 219, 844
BslFI GGGAC 1 cut(s) 695
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 695
Bsp13I TCCGGA 1 cut(s) 843
Bsp143I GATC 3 cut(s) 69, 235, 529
BspACI CCGC 1 cut(s) 747
BspEI TCCGGA 1 cut(s) 843
BspLI GGNNCC 1 cut(s) 730
BspQI GCTCTTC 1 cut(s) 795
BssECI CCNNGG 3 cut(s) 135, 613, 861
BssMI GATC 3 cut(s) 69, 235, 529
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 4 cut(s) 124, 276, 387, 565
Bst6I CTCTTC 2 cut(s) 614, 795
BstAPI GCANNNNNTGC 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 35, 806
BstDSI CCRYGG 1 cut(s) 861
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 2 cut(s) 719, 852
BstKTI GATC 3 cut(s) 72, 238, 532
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 69, 235, 529
BstMCI CGRYCG 1 cut(s) 751
BstMWI GCNNNNNNNGC 5 cut(s) 358, 453, 468, 491, 644
BstNI CCWGG 1 cut(s) 615
BstSCI CCNGG 2 cut(s) 217, 613
BstSFI CTRYAG 2 cut(s) 73, 685
BstV1I GCAGC 1 cut(s) 659
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 861
BtsCI GGATG 2 cut(s) 719, 852
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 3 cut(s) 129, 240, 625
Cac8I GCNNGC 1 cut(s) 208
CaiI CAGNNNCTG 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 729
Csp6I GTAC 1 cut(s) 185
CspCI CAANNNNNGTGG 2 cut(s) 721, 756
CviAII CATG 1 cut(s) 468
CviJI RGCY 7 cut(s) 352, 427, 462, 583, 602, 655, 805
CviKI_1 RGCY 7 cut(s) 352, 427, 462, 583, 602, 655, 805
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 2 cut(s) 35, 806
DpnI GATC 3 cut(s) 71, 237, 531
DpnII GATC 3 cut(s) 69, 235, 529
Eam1104I CTCTTC 2 cut(s) 614, 795
EarI CTCTTC 2 cut(s) 614, 795
Eco130I CCWWGG 1 cut(s) 135
Eco32I GATATC 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 729
Eco57I CTGAAG 2 cut(s) 270, 819
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 613
EcoRV GATATC 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 471
FaqI GGGAC 1 cut(s) 695
FatI CATG 1 cut(s) 467
Fnu4HI GCNGC 1 cut(s) 648
FokI GGATG 2 cut(s) 726, 859
Fsp4HI GCNGC 1 cut(s) 648
FspBI CTAG 1 cut(s) 698
GluI GCNGC 1 cut(s) 648
HapII CCGG 2 cut(s) 219, 844
Hin1II CATG 1 cut(s) 471
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 2 cut(s) 108, 245
HpaII CCGG 2 cut(s) 219, 844
Hpy166II GTNNAC 3 cut(s) 90, 143, 732
Hpy188I TCNGA 3 cut(s) 103, 235, 250
Hpy188III TCNNGA 3 cut(s) 797, 844, 871
Hpy8I GTNNAC 3 cut(s) 90, 143, 732
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 2 cut(s) 369, 407
HpyCH4III ACNGT 4 cut(s) 124, 276, 387, 565
HpyCH4V TGCA 7 cut(s) 173, 200, 210, 368, 485, 623, 717
HpyF10VI GCNNNNNNNGC 5 cut(s) 358, 453, 468, 491, 644
HpyF3I CTNAG 2 cut(s) 35, 806
Hsp92II CATG 1 cut(s) 471
Kpn2I TCCGGA 1 cut(s) 843
Kzo9I GATC 3 cut(s) 69, 235, 529
LguI GCTCTTC 1 cut(s) 795
Lsp1109I GCAGC 1 cut(s) 659
LweI GCATC 3 cut(s) 456, 684, 704
MaeI CTAG 1 cut(s) 698
MaeIII GTNAC 2 cut(s) 124, 416
MalI GATC 3 cut(s) 71, 237, 531
MboI GATC 3 cut(s) 69, 235, 529
MboII GAAGA 7 cut(s) 170, 173, 296, 302, 601, 794, 812
MfeI CAATTG 2 cut(s) 195, 363
MflI RGATCY 1 cut(s) 235
MluCI AATT 7 cut(s) 195, 293, 363, 542, 567, 792, 825
MlyI GAGTC 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 535
MnlI CCTC 4 cut(s) 148, 427, 513, 868
MroI TCCGGA 1 cut(s) 843
MseI TTAA 2 cut(s) 399, 660
MspI CCGG 2 cut(s) 219, 844
MspR9I CCNGG 2 cut(s) 219, 615
MunI CAATTG 2 cut(s) 195, 363
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 5 cut(s) 358, 453, 468, 491, 644
NciI CCSGG 1 cut(s) 219
NdeII GATC 3 cut(s) 69, 235, 529
NlaIII CATG 1 cut(s) 471
NlaIV GGNNCC 1 cut(s) 730
NmuCI GTSAC 2 cut(s) 124, 416
PciSI GCTCTTC 1 cut(s) 795
PfeI GAWTC 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 217
PkrI GCNGC 1 cut(s) 649
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PsiI TTATAA 2 cut(s) 308, 594
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 1 cut(s) 730
PspPI GGNCC 1 cut(s) 729
PstNI CAGNNNCTG 1 cut(s) 450
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 795
SaqAI TTAA 2 cut(s) 399, 660
SatI GCNGC 1 cut(s) 648
Sau3AI GATC 3 cut(s) 69, 235, 529
Sau96I GGNCC 1 cut(s) 729
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 2 cut(s) 219, 615
SetI ASST 9 cut(s) 80, 333, 418, 429, 438, 505, 604, 777, 807
SfaNI GCATC 3 cut(s) 456, 684, 704
SfcI CTRYAG 2 cut(s) 73, 685
SinI GGWCC 1 cut(s) 729
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 7 cut(s) 195, 293, 363, 542, 567, 792, 825
SsiI CCGC 1 cut(s) 747
SspMI CTAG 1 cut(s) 698
StyD4I CCNGG 2 cut(s) 217, 613
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 4 cut(s) 124, 276, 387, 565
TaqI TCGA 2 cut(s) 119, 512
TasI AATT 7 cut(s) 195, 293, 363, 542, 567, 792, 825
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 399, 660
Tru9I TTAA 2 cut(s) 399, 660
TscAI CASTG 3 cut(s) 129, 247, 625
TseFI GTSAC 2 cut(s) 124, 416
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 2 cut(s) 124, 416
TspDTI ATGAA 3 cut(s) 276, 303, 808
TspGWI ACGGA 1 cut(s) 878
TspRI CASTG 3 cut(s) 129, 247, 625
VpaK11BI GGWCC 1 cut(s) 729
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 792
XcmI CCANNNNNNNNNTGG 1 cut(s) 739
XspI CTAG 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.