Rorug04G0276600

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004757
Physical Location & Seq
Reverse (-)
44891795 .. 44894220
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0276600.1

Sequence Viewer

Length: 789 bp
ATGTGCACATATGGTGGCAGGTTATTAGCGAGTGATAAGATATATGGTGGCAGGTTATTAGCGAGTTTGCAGTTGTTTGTTAGAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCGAAGATATTGATCACCACTTGTCGATTTAACTCTTCTAGGAGTCCTGCTTTTACAGAGGAACTACTTTCGGTGATCCCAAATGCGCAGTACTATAAAAGAGGCACTTATGACTTGAAAAAGAATCATGGAAATCCAACCAGTCATGAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTGGGAGATTAATACAGTCACTTGAGGGAGAACCAAATTTTTGTGGTCGGCGAGTTGTAACTTTCCACAACCAGCGAGATTTTATATTCTTCCGGCATCATCGGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGAAAAGGGCAAAAAGACCAAGGATTCCAAAGATGACGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGGAATGTGGTCCTCGTTTTACCCTTAAATTGACTAGTCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGAGATCAATGGAAACTTTGATTGATTGGATTGATAGTGAAGTCAACATGAGCAATACTTGTGTACTTTTTCGAACTTATGCTCCTGTGCATTTCAGGATTTTGAATGGTGAAGATGTAGATATAGAGGAAACGGTTCTTCGCACTCCAATATCCAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

262

Amino Acids

30.24

Weight (kDa)

8.9

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 81 - 190 2.8e-13 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 216
Acc36I ACCTGC 2 cut(s) 9, 42
AccII CGCG 1 cut(s) 529
AciI CCGC 3 cut(s) 92, 107, 603
AclWI GGATC 2 cut(s) 199, 587
AcsI RAATTY 1 cut(s) 361
AcuI CTGAAG 2 cut(s) 483, 531
AfaI GTAC 3 cut(s) 221, 431, 690
AfiI CCNNNNNNNGG 1 cut(s) 602
AgsI TTSAA 4 cut(s) 115, 247, 440, 730
AhlI ACTAGT 1 cut(s) 569
AloI GAACNNNNNNTCC 2 cut(s) 691, 723
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 443
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 2 cut(s) 199, 587
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 577
ApoI RAATTY 1 cut(s) 361
AseI ATTAAT 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 759
AspLEI GCGC 3 cut(s) 217, 529, 531
AspS9I GGNCC 1 cut(s) 545
AsuHPI GGTGA 3 cut(s) 136, 214, 746
AsuII TTCGAA 1 cut(s) 697
AvaII GGWCC 1 cut(s) 545
BaeGI GKGCMC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 589
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 443
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 4 cut(s) 168, 570, 597, 787
BfmI CTRYAG 2 cut(s) 533, 575
BfuAI ACCTGC 2 cut(s) 9, 42
BisI GCNGC 1 cut(s) 578
BlsI GCNGC 1 cut(s) 579
BmcAI AGTACT 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 545
BmsI GCATC 2 cut(s) 79, 430
Bpu10I CCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 697
BpuEI CTTGAG 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 313, 483
BsaXI ACNNNNNCTCC 4 cut(s) 599, 629, 691, 721
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse1I ACTGG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 313, 483
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 270
BsePI GCGCGC 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 589
Bsh1236I CGCG 1 cut(s) 529
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 418
BslFI GGGAC 1 cut(s) 598
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 598
Bsp119I TTCGAA 1 cut(s) 697
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 141, 204, 592, 629
BspACI CCGC 3 cut(s) 92, 107, 603
BspCNI CTCAG 1 cut(s) 274
BspFNI CGCG 1 cut(s) 529
BspHI TCATGA 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 579
BspMI ACCTGC 2 cut(s) 9, 42
BspPI GGATC 2 cut(s) 199, 587
BspT104I TTCGAA 1 cut(s) 697
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 313, 483
BssHII GCGCGC 1 cut(s) 527
BssMI GATC 4 cut(s) 141, 204, 592, 629
BssT1I CCWWGG 2 cut(s) 313, 483
Bst4CI ACNGT 2 cut(s) 342, 760
Bst6I CTCTTC 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 697
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 529
BstHHI GCGC 3 cut(s) 217, 529, 531
BstKTI GATC 4 cut(s) 144, 207, 595, 632
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 4 cut(s) 141, 204, 592, 629
BstSFI CTRYAG 2 cut(s) 533, 575
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 529
BstV1I GCAGC 1 cut(s) 589
BtsCI GGATG 1 cut(s) 100
BveI ACCTGC 2 cut(s) 9, 42
Cac8I GCNNGC 1 cut(s) 529
CciI TCATGA 1 cut(s) 274
CfoI GCGC 3 cut(s) 217, 529, 531
Cfr13I GGNCC 1 cut(s) 545
CseI GACGC 1 cut(s) 509
Csp6I GTAC 3 cut(s) 220, 430, 689
CviAII CATG 3 cut(s) 257, 275, 673
CviJI RGCY 3 cut(s) 280, 286, 461
CviKI_1 RGCY 3 cut(s) 280, 286, 461
CviQI GTAC 3 cut(s) 220, 430, 689
DdeI CTNAG 1 cut(s) 282
DpnI GATC 4 cut(s) 143, 206, 594, 631
DpnII GATC 4 cut(s) 141, 204, 592, 629
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco130I CCWWGG 2 cut(s) 313, 483
Eco47I GGWCC 1 cut(s) 545
Eco57I CTGAAG 2 cut(s) 483, 531
EcoT14I CCWWGG 2 cut(s) 313, 483
ErhI CCWWGG 2 cut(s) 313, 483
FaeI CATG 3 cut(s) 260, 278, 676
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FaqI GGGAC 1 cut(s) 598
FatI CATG 3 cut(s) 256, 274, 672
FauI CCCGC 1 cut(s) 596
FauNDI CATATG 1 cut(s) 10
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 578
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 578
FspBI CTAG 4 cut(s) 168, 570, 597, 787
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 3 cut(s) 216, 528, 530
GluI GCNGC 1 cut(s) 578
HapII CCGG 1 cut(s) 418
HgaI GACGC 1 cut(s) 509
HhaI GCGC 3 cut(s) 217, 529, 531
Hin1II CATG 3 cut(s) 260, 278, 676
Hin6I GCGC 3 cut(s) 215, 527, 529
HinP1I GCGC 3 cut(s) 215, 527, 529
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 5 cut(s) 122, 127, 172, 253, 488
HpaII CCGG 1 cut(s) 418
HphI GGTGA 3 cut(s) 136, 214, 746
Hpy166II GTNNAC 4 cut(s) 6, 622, 670, 689
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 275, 721
Hpy8I GTNNAC 4 cut(s) 6, 622, 670, 689
HpyCH4III ACNGT 2 cut(s) 342, 760
HpyCH4V TGCA 4 cut(s) 6, 70, 577, 715
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 3 cut(s) 260, 278, 676
HspAI GCGC 3 cut(s) 215, 527, 529
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 4 cut(s) 141, 204, 592, 629
LmnI GCTCC 1 cut(s) 712
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 2 cut(s) 79, 430
MaeI CTAG 4 cut(s) 168, 570, 597, 787
MaeIII GTNAC 2 cut(s) 342, 382
MalI GATC 4 cut(s) 143, 206, 594, 631
MboI GATC 4 cut(s) 141, 204, 592, 629
MboII GAAGA 6 cut(s) 145, 156, 406, 476, 749, 755
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 361, 563
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 6 cut(s) 181, 224, 343, 558, 593, 745
MroXI GAANNNNTTC 1 cut(s) 759
MseI TTAA 4 cut(s) 159, 293, 335, 561
MspI CCGG 1 cut(s) 418
MvnI CGCG 1 cut(s) 529
NdeI CATATG 1 cut(s) 10
NdeII GATC 4 cut(s) 141, 204, 592, 629
NlaIII CATG 3 cut(s) 260, 278, 676
NmuCI GTSAC 1 cut(s) 342
NsbI TGCGCA 1 cut(s) 216
NspV TTCGAA 1 cut(s) 697
PagI TCATGA 1 cut(s) 274
PauI GCGCGC 1 cut(s) 527
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 4 cut(s) 122, 127, 253, 488
PkrI GCNGC 1 cut(s) 579
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PshBI ATTAAT 1 cut(s) 335
PspPI GGNCC 1 cut(s) 545
PstI CTGCAG 1 cut(s) 579
PteI GCGCGC 1 cut(s) 527
RsaI GTAC 3 cut(s) 221, 431, 690
RsaNI GTAC 3 cut(s) 220, 430, 689
SaqAI TTAA 4 cut(s) 159, 293, 335, 561
SatI GCNGC 1 cut(s) 578
Sau3AI GATC 4 cut(s) 141, 204, 592, 629
Sau96I GGNCC 1 cut(s) 545
ScaI AGTACT 1 cut(s) 221
SchI GAGTC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 23, 56, 288
SfaNI GCATC 2 cut(s) 79, 430
SfcI CTRYAG 2 cut(s) 533, 575
SfuI TTCGAA 1 cut(s) 697
SinI GGWCC 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 2 cut(s) 361, 563
SsiI CCGC 3 cut(s) 92, 107, 603
SspMI CTAG 4 cut(s) 168, 570, 597, 787
StyI CCWWGG 2 cut(s) 313, 483
TaaI ACNGT 2 cut(s) 342, 760
TaqI TCGA 3 cut(s) 125, 154, 697
TasI AATT 2 cut(s) 361, 563
TatI WGTACW 2 cut(s) 219, 688
TfiI GAWTC 4 cut(s) 122, 127, 253, 488
Tru1I TTAA 4 cut(s) 159, 293, 335, 561
Tru9I TTAA 4 cut(s) 159, 293, 335, 561
TseFI GTSAC 1 cut(s) 342
TseI GCWGC 1 cut(s) 577
Tsp45I GTSAC 1 cut(s) 342
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 1 cut(s) 545
VspI ATTAAT 1 cut(s) 335
XapI RAATTY 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 4 cut(s) 168, 570, 597, 787
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.