Prupe.1G316800_v2.0.a1

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004757
Physical Location & Seq
Reverse (-)
30522749 .. 30526642
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G316800.1

Sequence Viewer

Length: 1209 bp
ATGGATGATGCTGAAGGAAGAAGAGAGGAGAAGAAAACGAGGGAAGGAATGATAATCAGTACGGGACTGAAAACAGTAGTGGAAGCCATTCACGCAAGCCCCACGCAGTCCGTCCTCTATCTCTCTGGTGGAGCCTCTCAGGCTGTTGCGTGGCTGCTGTCCGTTCCTGGAGCCTCAAGCACAGTCCTCGAAGCCGTGGTGCCCTACTCCAGAATGTCTATGATCCAGTTACTCGGGAAGATTCCGAACCAGTTTTGTAGCTCACACACTGCTGAAGAAATGGCTTTGTTGGCCTACAATCGCGCTCTCAAGCTCTCCTCACCAGGTTCTCCGGTTGTTGGTGTGGGTTTTACTGGTACTTTGGCTACCTCACGTCCAAAACTCGGGGACCACAGGCTTCACTTGTCAACAAGGACATCTGACAGACTCTGGGTATCAACGGTGACCCTTTCTAAGGGTTTACGAAATCGAGAGGAAGAAGATATGGTTGCAAGTCATCTTCTACTCAAGGCAATTGCAAATGCATGTAAAGTTCCTGGAACATTTGTTTCAGAGCTCACTGACTCCGAAGTACCTGATGAATGTGAAAAGCAGTTCAGTGAAGATGAAGAGTTGGAGCAACTTATAAATGGGAAAATATGCTTTAAGGTTTATCCGTTTTCGAGTGAGCCACACATGTCAACTGCAGAAAGGAAGATAATACTGCCTGGTTCTTTTAATCCATTACATGAAGGTCACATGAAGCTCTTGGAGGTTGCTACTAGCTTATGTGGCAATAGCTACCCATGCTTTGAAATATCAGCAGTCAATGCTGACAAACCTCCACTTTCAACATCACAAATCAAAGATCGTGTCAAGCAGTTTGAGAACGTTGGAAAAACAGTAATTATATCCAATCAGCCATACTTTTATAAGAAAGCTGAACTTTTCCCAGGCAGTGCTTTTGTGATTGGTGCTGACACAGCAGCAAGGCTGATTAATCCCAAATACTATGACGGCGACTACAAGAAGATGCTGGAGATACTTATTGGATGCAAGAAAACAGGGTCCACTTTTCTCGTGGGTGGTCGTAATGTGGATGGTGTTTTCAAGGTTCTTGAAGATTTTGATATTCCAGAGGAGTTCAGAGATATGTTCATCTCAATACCAGAAGAGAAGTTCCGCATGGATTTATCCTCCACTGAAATTAGGAAACGACTTGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

403

Amino Acids

44.43

Weight (kDa)

6.13

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 626, 912
AccB1I GGYRCC 1 cut(s) 199
AccII CGCG 1 cut(s) 303
AciI CCGC 1 cut(s) 1162
AclI AACGTT 1 cut(s) 870
AclWI GGATC 1 cut(s) 217
AcuI CTGAAG 2 cut(s) 33, 294
AfaI GTAC 3 cut(s) 61, 358, 573
AfiI CCNNNNNNNGG 3 cut(s) 338, 383, 454
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 4 cut(s) 794, 831, 1090, 1100
AjiI CACGTC 1 cut(s) 374
AjnI CCWGG 5 cut(s) 166, 322, 535, 706, 931
AluBI AGCT 7 cut(s) 261, 313, 556, 745, 765, 780, 920
AluI AGCT 7 cut(s) 261, 313, 556, 745, 765, 780, 920
Alw21I GWGCWC 1 cut(s) 558
AlwI GGATC 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 429
Ama87I CYCGRG 2 cut(s) 233, 383
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 2 cut(s) 154, 965
ArsI GACNNNNNNTTYG 2 cut(s) 837, 869
AseI ATTAAT 1 cut(s) 978
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 388, 1047
AsuHPI GGTGA 2 cut(s) 312, 454
AvaI CYCGRG 2 cut(s) 233, 383
AvaII GGWCC 2 cut(s) 388, 1047
BaeGI GKGCMC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 558
BauI CACGAG 1 cut(s) 1058
Bbv12I GWGCWC 1 cut(s) 558
BbvI GCAGC 2 cut(s) 141, 977
BccI CCATC 1 cut(s) 1073
BceAI ACGGC 2 cut(s) 179, 1012
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BciT130I CCWGG 5 cut(s) 168, 324, 537, 708, 933
BfaI CTAG 1 cut(s) 762
BfmI CTRYAG 1 cut(s) 684
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 2 cut(s) 155, 966
BlsI GCNGC 2 cut(s) 156, 967
Bme1390I CCNGG 5 cut(s) 168, 324, 537, 708, 933
Bme18I GGWCC 2 cut(s) 388, 1047
BmeT110I CYCGRG 2 cut(s) 233, 383
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 2 cut(s) 388, 1047
BmiI GGNNCC 5 cut(s) 133, 172, 201, 389, 1048
BmrFI CCNGG 5 cut(s) 168, 324, 537, 708, 933
BmsI GCATC 2 cut(s) 1002, 1022
BpmI CTGGAG 3 cut(s) 189, 193, 1037
BpuEI CTTGAG 3 cut(s) 160, 293, 491
BsaJI CCNNGG 2 cut(s) 195, 931
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 383, 454
Bse1I ACTGG 3 cut(s) 226, 250, 358
BseBI CCWGG 5 cut(s) 168, 324, 537, 708, 933
BseDI CCNNGG 2 cut(s) 195, 931
BseGI GGATG 3 cut(s) 10, 1037, 1084
BseLI CCNNNNNNNGG 3 cut(s) 338, 383, 454
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 3 cut(s) 226, 250, 358
BseRI GAGGAG 3 cut(s) 41, 307, 1133
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 2 cut(s) 141, 977
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 293
BshNI GGYRCC 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 558
BsiHKCI CYCGRG 2 cut(s) 233, 383
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 2 cut(s) 78, 401
BslI CCNNNNNNNGG 3 cut(s) 338, 383, 454
BsmFI GGGAC 2 cut(s) 78, 401
BsnI GGCC 1 cut(s) 293
BsoBI CYCGRG 2 cut(s) 233, 383
Bsp1286I GDGCHC 2 cut(s) 204, 558
Bsp143I GATC 2 cut(s) 222, 847
BspACI CCGC 1 cut(s) 1162
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 5 cut(s) 133, 172, 201, 389, 1048
BspMAI CTGCAG 1 cut(s) 688
BspPI GGATC 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 199
BsrI ACTGG 3 cut(s) 226, 250, 358
BssECI CCNNGG 2 cut(s) 195, 931
BssMI GATC 2 cut(s) 222, 847
BssSI CACGAG 1 cut(s) 1058
Bst2BI CACGAG 1 cut(s) 1058
Bst2UI CCWGG 5 cut(s) 168, 324, 537, 708, 933
Bst4CI ACNGT 4 cut(s) 76, 184, 442, 883
Bst6I CTCTTC 3 cut(s) 16, 603, 1146
BstAPI GCANNNNNTGC 1 cut(s) 809
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 138, 453
BstDSI CCRYGG 1 cut(s) 195
BstEII GGTNACC 1 cut(s) 442
BstENI CCTNNNNNAGG 1 cut(s) 452
BstF5I GGATG 3 cut(s) 10, 1037, 1084
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 2 cut(s) 225, 850
BstMBI GATC 2 cut(s) 222, 847
BstMWI GCNNNNNNNGC 7 cut(s) 92, 140, 290, 771, 786, 809, 962
BstNI CCWGG 5 cut(s) 168, 324, 537, 708, 933
BstNSI RCATGY 2 cut(s) 528, 679
BstPI GGTNACC 1 cut(s) 442
BstSCI CCNGG 5 cut(s) 166, 322, 535, 706, 931
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 204
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 141, 977
BsuRI GGCC 1 cut(s) 293
BtgI CCRYGG 1 cut(s) 195
BtrI CACGTC 1 cut(s) 374
BtsCI GGATG 3 cut(s) 10, 1037, 1084
BtsI GCAGTG 2 cut(s) 267, 943
BtsIMutI CAGTG 5 cut(s) 267, 558, 604, 943, 1179
Cac8I GCNNGC 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 429
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 2 cut(s) 388, 1047
CsiI ACCWGGT 1 cut(s) 322
Csp6I GTAC 3 cut(s) 60, 357, 572
CviAII CATG 6 cut(s) 525, 676, 728, 739, 786, 1165
CviQI GTAC 3 cut(s) 60, 357, 572
DdeI CTNAG 2 cut(s) 138, 453
DpnI GATC 2 cut(s) 224, 849
DpnII GATC 2 cut(s) 222, 847
Eam1104I CTCTTC 3 cut(s) 16, 603, 1146
EarI CTCTTC 3 cut(s) 16, 603, 1146
Ecl136II GAGCTC 1 cut(s) 556
Eco24I GRGCYC 1 cut(s) 558
Eco47I GGWCC 2 cut(s) 388, 1047
Eco53kI GAGCTC 1 cut(s) 556
Eco57I CTGAAG 2 cut(s) 33, 294
Eco88I CYCGRG 2 cut(s) 233, 383
Eco91I GGTNACC 1 cut(s) 442
EcoICRI GAGCTC 1 cut(s) 556
EcoNI CCTNNNNNAGG 1 cut(s) 452
EcoO65I GGTNACC 1 cut(s) 442
EcoRII CCWGG 5 cut(s) 166, 322, 535, 706, 931
EcoT22I ATGCAT 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 558
FaeI CATG 6 cut(s) 528, 679, 731, 742, 789, 1168
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FaqI GGGAC 2 cut(s) 78, 401
FatI CATG 6 cut(s) 524, 675, 727, 738, 785, 1164
Fnu4HI GCNGC 2 cut(s) 155, 966
FokI GGATG 3 cut(s) 17, 1044, 1091
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 2 cut(s) 155, 966
FspBI CTAG 1 cut(s) 762
GlaI GCGC 1 cut(s) 304
GluI GCNGC 2 cut(s) 155, 966
GsuI CTGGAG 3 cut(s) 189, 193, 1037
HaeIII GGCC 1 cut(s) 293
HapII CCGG 1 cut(s) 332
HhaI GCGC 1 cut(s) 305
Hin1II CATG 6 cut(s) 528, 679, 731, 742, 789, 1168
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 2 cut(s) 408, 681
HindII GTYRAC 2 cut(s) 408, 681
HinfI GANTC 3 cut(s) 241, 426, 563
HpaII CCGG 1 cut(s) 332
HphI GGTGA 2 cut(s) 312, 454
Hpy166II GTNNAC 4 cut(s) 408, 461, 681, 1050
Hpy188I TCNGA 5 cut(s) 246, 421, 553, 568, 1127
Hpy188III TCNNGA 5 cut(s) 210, 235, 470, 1097, 1115
Hpy8I GTNNAC 4 cut(s) 408, 461, 681, 1050
HpyAV CCTTC 3 cut(s) 8, 38, 725
HpyCH4III ACNGT 4 cut(s) 76, 184, 442, 883
HpyCH4IV ACGT 2 cut(s) 373, 870
HpyCH4V TGCA 5 cut(s) 491, 518, 524, 686, 1035
HpyF10VI GCNNNNNNNGC 7 cut(s) 92, 140, 290, 771, 786, 809, 962
HpyF3I CTNAG 2 cut(s) 138, 453
HpySE526I ACGT 2 cut(s) 373, 870
Hsp92II CATG 6 cut(s) 528, 679, 731, 742, 789, 1168
HspAI GCGC 1 cut(s) 303
Kzo9I GATC 2 cut(s) 222, 847
LmnI GCTCC 3 cut(s) 131, 170, 616
Lsp1109I GCAGC 2 cut(s) 141, 977
LweI GCATC 2 cut(s) 1002, 1022
MabI ACCWGGT 1 cut(s) 322
MaeI CTAG 1 cut(s) 762
MaeII ACGT 2 cut(s) 373, 870
MaeIII GTNAC 3 cut(s) 228, 442, 734
MalI GATC 2 cut(s) 224, 849
MboI GATC 2 cut(s) 222, 847
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 2 cut(s) 204, 558
MluCI AATT 3 cut(s) 513, 885, 1185
MlyI GAGTC 2 cut(s) 420, 557
MmeI TCCRAC 2 cut(s) 594, 853
Mph1103I ATGCAT 1 cut(s) 526
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 3 cut(s) 645, 717, 978
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 5 cut(s) 168, 324, 537, 708, 933
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 5 cut(s) 168, 324, 537, 708, 933
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 7 cut(s) 92, 140, 290, 771, 786, 809, 962
NdeII GATC 2 cut(s) 222, 847
NlaIII CATG 6 cut(s) 528, 679, 731, 742, 789, 1168
NlaIV GGNNCC 5 cut(s) 133, 172, 201, 389, 1048
NmuCI GTSAC 2 cut(s) 442, 734
NsiI ATGCAT 1 cut(s) 526
NspI RCATGY 2 cut(s) 528, 679
PciI ACATGT 1 cut(s) 675
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 241
PfoI TCCNGGA 2 cut(s) 166, 535
PkrI GCNGC 2 cut(s) 156, 967
PleI GAGTC 2 cut(s) 420, 557
PpsI GAGTC 2 cut(s) 420, 557
PscI ACATGT 1 cut(s) 675
PshBI ATTAAT 1 cut(s) 978
PsiI TTATAA 2 cut(s) 626, 912
Psp124BI GAGCTC 1 cut(s) 558
Psp1406I AACGTT 1 cut(s) 870
Psp6I CCWGG 5 cut(s) 166, 322, 535, 706, 931
PspEI GGTNACC 1 cut(s) 442
PspGI CCWGG 5 cut(s) 166, 322, 535, 706, 931
PspN4I GGNNCC 5 cut(s) 133, 172, 201, 389, 1048
PspPI GGNCC 2 cut(s) 388, 1047
PstI CTGCAG 1 cut(s) 688
PstNI CAGNNNCTG 1 cut(s) 429
RsaI GTAC 3 cut(s) 61, 358, 573
RsaNI GTAC 3 cut(s) 60, 357, 572
SacI GAGCTC 1 cut(s) 558
SaqAI TTAA 3 cut(s) 645, 717, 978
SatI GCNGC 2 cut(s) 155, 966
Sau3AI GATC 2 cut(s) 222, 847
Sau96I GGNCC 2 cut(s) 388, 1047
SchI GAGTC 2 cut(s) 420, 557
ScrFI CCNGG 5 cut(s) 168, 324, 537, 708, 933
SduI GDGCHC 2 cut(s) 204, 558
SexAI ACCWGGT 1 cut(s) 322
SfaNI GCATC 2 cut(s) 1002, 1022
SfcI CTRYAG 1 cut(s) 684
SinI GGWCC 2 cut(s) 388, 1047
SmlI CTYRAG 4 cut(s) 175, 308, 506, 1199
SmoI CTYRAG 4 cut(s) 175, 308, 506, 1199
Sse9I AATT 3 cut(s) 513, 885, 1185
SsiI CCGC 1 cut(s) 1162
SspMI CTAG 1 cut(s) 762
SstI GAGCTC 1 cut(s) 558
StyD4I CCNGG 5 cut(s) 166, 322, 535, 706, 931
TaaI ACNGT 4 cut(s) 76, 184, 442, 883
TaiI ACGT 2 cut(s) 376, 873
TaqI TCGA 3 cut(s) 189, 469, 662
TasI AATT 3 cut(s) 513, 885, 1185
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 3 cut(s) 645, 717, 978
Tru9I TTAA 3 cut(s) 645, 717, 978
TscAI CASTG 5 cut(s) 274, 565, 604, 943, 1186
TseFI GTSAC 2 cut(s) 442, 734
TseI GCWGC 2 cut(s) 154, 965
Tsp45I GTSAC 2 cut(s) 442, 734
TspDTI ATGAA 5 cut(s) 594, 621, 744, 755, 1126
TspGWI ACGGA 3 cut(s) 100, 151, 645
TspRI CASTG 5 cut(s) 274, 565, 604, 943, 1186
VpaK11BI GGWCC 2 cut(s) 388, 1047
VspI ATTAAT 1 cut(s) 978
XagI CCTNNNNNAGG 1 cut(s) 452
XceI RCATGY 2 cut(s) 528, 679
XcmI CCANNNNNNNNNTGG 1 cut(s) 1057
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 1 cut(s) 762
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.