Rorug04G0276400

Cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004757
Physical Location & Seq
Forward (+)
44855050 .. 44855510
461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0276400.1

Sequence Viewer

Length: 369 bp
ATGAGTAGAGAATTGTTGGAGGACATTCCTTATGCAACCTGCAAAGTTGGGCTTATTCGCTACATACAACTTATAGTTGATTCCATTACATTTGCTGTTTTTCATCTCAGGAAAATAATGTCTTCTGATAAGGCCATCGCCAGGCGTGTTGAAGCCTGCAGCAGCAACACTGAAACTATGTCTAAAACAACACCGAACACACAGGAAAAGCCTGGTTCCAGTCTGGCAAAAGCACTGGCACAGAGAGCAGTTTTTGGTTCACGTCATGATCATCGTCAGGTCAAGGGGAGAAAACTAGCTGAAAATGGAGTCAAGTTTTCACCGAGCAGACTAAGCAAGGTTTCTTTGTCTAAAGATTCAGTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

122

Amino Acids

13.55

Weight (kDa)

10.13

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 1 cut(s) 152
AjiI CACGTC 1 cut(s) 263
AjnI CCWGG 2 cut(s) 140, 211
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 159, 162
AsuHPI GGTGA 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 171, 174
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 142, 213
BclI TGATCA 1 cut(s) 268
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 2 cut(s) 160, 163
BlsI GCNGC 2 cut(s) 161, 164
Bme1390I CCNGG 2 cut(s) 142, 213
BmgBI CACGTC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 142, 213
BpiI GAAGAC 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse1I ACTGG 2 cut(s) 219, 240
BseBI CCWGG 2 cut(s) 142, 213
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 2 cut(s) 219, 240
BseXI GCAGC 2 cut(s) 171, 174
BshFI GGCC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 141
BsnI GGCC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 1 cut(s) 47
BsrI ACTGG 2 cut(s) 219, 240
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 142, 213
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 2 cut(s) 107, 332
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 245, 333
BstNI CCWGG 2 cut(s) 142, 213
BstSCI CCNGG 2 cut(s) 140, 211
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 171, 174
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 134
BtgZI GCGATG 1 cut(s) 121
BtrI CACGTC 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 168, 233
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 157
CciI TCATGA 1 cut(s) 265
CviAII CATG 1 cut(s) 266
CviJI RGCY 5 cut(s) 52, 134, 155, 211, 299
CviKI_1 RGCY 5 cut(s) 52, 134, 155, 211, 299
DdeI CTNAG 2 cut(s) 107, 332
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 140, 211
FaeI CATG 1 cut(s) 269
FaiI YATR 5 cut(s) 33, 65, 74, 179, 267
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 1 cut(s) 265
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 160, 163
Fsp4HI GCNGC 2 cut(s) 160, 163
FspBI CTAG 1 cut(s) 296
GluI GCNGC 2 cut(s) 160, 163
HaeIII GGCC 1 cut(s) 134
Hin1II CATG 1 cut(s) 269
HinfI GANTC 3 cut(s) 80, 309, 356
HphI GGTGA 1 cut(s) 312
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 109, 266
Hpy8I GTNNAC 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 3 cut(s) 35, 42, 159
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 333
HpyF3I CTNAG 2 cut(s) 107, 332
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 171, 174
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 262
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 1 cut(s) 114
MluCI AATT 1 cut(s) 11
MlyI GAGTC 1 cut(s) 318
MnlI CCTC 1 cut(s) 13
MseI TTAA 1 cut(s) 363
MspR9I CCNGG 2 cut(s) 142, 213
MvaI CCWGG 2 cut(s) 142, 213
MwoI GCNNNNNNNGC 2 cut(s) 245, 333
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 217
PagI TCATGA 1 cut(s) 265
PfeI GAWTC 2 cut(s) 80, 356
PkrI GCNGC 2 cut(s) 161, 164
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 140, 211
PspGI CCWGG 2 cut(s) 140, 211
PspN4I GGNNCC 1 cut(s) 217
PstI CTGCAG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 2 cut(s) 160, 163
Sau3AI GATC 1 cut(s) 268
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 2 cut(s) 142, 213
SetI ASST 5 cut(s) 41, 265, 282, 301, 342
SfcI CTRYAG 1 cut(s) 157
Sse9I AATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 140, 211
TaiI ACGT 1 cut(s) 265
TasI AATT 1 cut(s) 11
TfiI GAWTC 2 cut(s) 80, 356
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 175, 240
TseI GCWGC 2 cut(s) 159, 162
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 2 cut(s) 175, 240
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.