Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002299

Physical Location & Seq

Genomic Coordinates Reverse (-)

142498 .. 144524

Gene Structure 2027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01275.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGAGATCATTTCGTGCTGCTGGTGGATCGGTTGATAACAGAATCCACGATTGAGGCTGCGATTCAGAGCAGGAACCAGATGTTGCAAGCTAATATACCCGTTGAGGAATGTACAATCTTGGACGATAAAACACTTGAGATGCTGCGTAACGGAGATTTGTCAATGGCTGAGTGCAGGATCTGTCACGACGAGGACTTGGATTCCAACATGGAGACTCCTTGTTCTTGCAGCGGCAGCGTCAAGTATGCGCATAGGAGGTGCGTACAGAGATGGTGTAACGAGAAAGGTGATACCACCTGCGAGATTTGCCATCAGGAATTCAAGCCGGATTATACAGCGCCGCCTCCGTTGCTAGAGTTAGGCCATGTTCCTCTCCATTTCAGGGGAAACTGGGGAATCTCTCAACGGGAGCATCGTTTCATCACAGTTGTACCTGCTGATTCCACTTTTATTGACCAACCATATCCTCTTTCTTCCACCACAAGCTTCATCTGTTGCCGTTCCCTTGTTCTCATTTTCATGGCTCTTCTCATTCTCCGACATACCCTCCCTTTAGTCCTCACCGGATCAAACCTTCATGTCTTCCCTTTGTTCACGTTGTTATTTCTGAGAATACTCGGAATCATGCTACCCATCTACGTTGTCACCAAAGCAGTCGCCACCTGCCGCCGCCATTCTCGGACCTTAGACACCTCTCCCTCCGATGATTCATCTGATGAAGAAACAGATTCATGGCGCTTGCCTCAAACGCAATCTTACATTATAGGCGTACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

259

Amino Acids

29.41

Weight (kDa)

5.54

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	85 - 130	6.7e-14	RING-variant domain
DUF3675	PF12428	136 - 246	9.6e-34	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01275 AT2G01275 AT2G01275 AT2G01275 AT2G01275
fragaria_vesca	FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130
malus_domestica	MD13G1028300.v1.1 MD16G1031200.v1.1
prunus_persica	Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1
pyrus_communis	pycom13g02670 pycom16g02720
rosa_chinensis	RchiOBHm_Chr4g0440831
rosa_laevigata	RLG00000006145
rosa_multiflora	Rmu_sc0005054.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381660
rosa_rugosa	Rorug04G0328400 Rorug04G0328500 Rorug04G0328600 Rorug04G0328600 Rorug04G0328700 Rorug04G0328800
rosa_samantha	Rh4BG393100 Rh4CG407900 Rh4DG387000
rosa_wichuraiana	Rw4G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	308, 674
Acc16I	TGCGCA	1 cut(s)	252
Acc36I	ACCTGC	3 cut(s)	308, 445, 674
AciI	CCGC	4 cut(s)	234, 344, 670, 673
AclWI	GGATC	3 cut(s)	36, 188, 577
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	4 cut(s)	115, 267, 435, 774
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	1 cut(s)	325
AluBI	AGCT	2 cut(s)	92, 489
AluI	AGCT	2 cut(s)	92, 489
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	3 cut(s)	36, 188, 577
AlwNI	CAGNNNCTG	1 cut(s)	183
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	5 cut(s)	19, 59, 145, 231, 237
ApoI	RAATTY	1 cut(s)	320
AspLEI	GCGC	3 cut(s)	253, 343, 741
AspS9I	GGNCC	1 cut(s)	684
AsuHPI	GGTGA	3 cut(s)	302, 556, 640
AvaII	GGWCC	1 cut(s)	684
BaeI	ACNNNNGTAYC	2 cut(s)	417, 450
BbsI	GAAGAC	1 cut(s)	577
BbvI	GCAGC	5 cut(s)	6, 46, 132, 243, 249
BccI	CCATC	3 cut(s)	267, 321, 644
BceAI	ACGGC	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	356
BfoI	RGCGCY	2 cut(s)	344, 742
BfuAI	ACCTGC	3 cut(s)	308, 445, 674
BisI	GCNGC	9 cut(s)	20, 60, 146, 232, 235, 238, 344, 670, 673
BlsI	GCNGC	9 cut(s)	21, 61, 147, 233, 236, 239, 345, 671, 674
Bme18I	GGWCC	1 cut(s)	684
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	403
BmsI	GCATC	2 cut(s)	132, 424
BmuI	ACTGGG	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	566
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	398
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	162, 602
BseNI	ACTGG	1 cut(s)	398
BseXI	GCAGC	5 cut(s)	6, 46, 132, 243, 249
BsgI	GTGCAG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	366
BsiSI	CCGG	2 cut(s)	329, 567
BsiWI	CGTACG	1 cut(s)	772
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	366
Bsp1407I	TGTACA	1 cut(s)	113
Bsp143I	GATC	4 cut(s)	7, 28, 180, 569
BspACI	CCGC	4 cut(s)	234, 344, 670, 673
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	2 cut(s)	163, 603
BspLI	GGNNCC	1 cut(s)	77
BspMI	ACCTGC	3 cut(s)	308, 445, 674
BspPI	GGATC	3 cut(s)	36, 188, 577
BspQI	GCTCTTC	1 cut(s)	534
BsrGI	TGTACA	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	398
BssMI	GATC	4 cut(s)	7, 28, 180, 569
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	534
BstAUI	TGTACA	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	90, 743
BstDEI	CTNAG	3 cut(s)	171, 611, 688
BstH2I	RGCGCY	2 cut(s)	344, 742
BstHHI	GCGC	3 cut(s)	253, 343, 741
BstKTI	GATC	4 cut(s)	10, 31, 183, 572
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	4 cut(s)	7, 28, 180, 569
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 309, 352, 751
BstV1I	GCAGC	5 cut(s)	6, 46, 132, 243, 249
BstV2I	GAAGAC	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	366
BveI	ACCTGC	3 cut(s)	308, 445, 674
Cac8I	GCNNGC	2 cut(s)	90, 743
CaiI	CAGNNNCTG	1 cut(s)	183
CfoI	GCGC	3 cut(s)	253, 343, 741
Cfr13I	GGNCC	1 cut(s)	684
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	4 cut(s)	114, 266, 434, 773
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviAII	CATG	6 cut(s)	211, 368, 523, 581, 628, 735
CviJI	RGCY	7 cut(s)	59, 92, 170, 328, 366, 489, 527
CviKI_1	RGCY	7 cut(s)	59, 92, 170, 328, 366, 489, 527
CviQI	GTAC	4 cut(s)	114, 266, 434, 773
DdeI	CTNAG	3 cut(s)	171, 611, 688
DpnI	GATC	4 cut(s)	9, 30, 182, 571
DpnII	GATC	4 cut(s)	7, 28, 180, 569
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	684
EcoRI	GAATTC	1 cut(s)	320
FaeI	CATG	6 cut(s)	214, 371, 526, 584, 631, 738
FatI	CATG	6 cut(s)	210, 367, 522, 580, 627, 734
Fnu4HI	GCNGC	9 cut(s)	20, 60, 146, 232, 235, 238, 344, 670, 673
Fsp4HI	GCNGC	9 cut(s)	20, 60, 146, 232, 235, 238, 344, 670, 673
FspAI	RTGCGCAY	1 cut(s)	252
FspBI	CTAG	1 cut(s)	356
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	3 cut(s)	252, 342, 740
GluI	GCNGC	9 cut(s)	20, 60, 146, 232, 235, 238, 344, 670, 673
HaeII	RGCGCY	2 cut(s)	344, 742
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	2 cut(s)	329, 567
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	3 cut(s)	253, 343, 741
Hin1II	CATG	6 cut(s)	214, 371, 526, 584, 631, 738
Hin6I	GCGC	3 cut(s)	251, 341, 739
HinP1I	GCGC	3 cut(s)	251, 341, 739
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	9 cut(s)	44, 64, 203, 217, 399, 443, 624, 710, 731
HpaII	CCGG	2 cut(s)	329, 567
HphI	GGTGA	3 cut(s)	302, 556, 640
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	7 cut(s)	69, 542, 612, 623, 684, 706, 718
Hpy188III	TCNNGA	2 cut(s)	188, 317
Hpy8I	GTNNAC	1 cut(s)	597
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	2 cut(s)	599, 642
HpyCH4V	TGCA	3 cut(s)	88, 177, 231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 309, 352, 751
HpyF3I	CTNAG	3 cut(s)	171, 611, 688
HpySE526I	ACGT	2 cut(s)	599, 642
Hsp92II	CATG	6 cut(s)	214, 371, 526, 584, 631, 738
HspAI	GCGC	3 cut(s)	251, 341, 739
Kzo9I	GATC	4 cut(s)	7, 28, 180, 569
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	5 cut(s)	6, 46, 132, 243, 249
LweI	GCATC	2 cut(s)	132, 424
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	2 cut(s)	599, 642
MaeIII	GTNAC	4 cut(s)	149, 185, 278, 646
MalI	GATC	4 cut(s)	9, 30, 182, 571
MboI	GATC	4 cut(s)	7, 28, 180, 569
MboII	GAAGA	4 cut(s)	468, 521, 577, 734
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	231, 565
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	2 cut(s)	329, 567
MwoI	GCNNNNNNNGC	4 cut(s)	237, 309, 352, 751
NdeII	GATC	4 cut(s)	7, 28, 180, 569
NlaIII	CATG	6 cut(s)	214, 371, 526, 584, 631, 738
NlaIV	GGNNCC	1 cut(s)	77
NmuCI	GTSAC	2 cut(s)	185, 646
NsbI	TGCGCA	1 cut(s)	252
PaqCI	CACCTGC	2 cut(s)	308, 674
PciSI	GCTCTTC	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	415
PfeI	GAWTC	8 cut(s)	44, 64, 203, 399, 443, 624, 710, 731
Pfl23II	CGTACG	1 cut(s)	772
PkrI	GCNGC	9 cut(s)	21, 61, 147, 233, 236, 239, 345, 671, 674
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PspLI	CGTACG	1 cut(s)	772
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	4 cut(s)	115, 267, 435, 774
RsaNI	GTAC	4 cut(s)	114, 266, 434, 773
RseI	CAYNNNNRTG	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	534
SatI	GCNGC	9 cut(s)	20, 60, 146, 232, 235, 238, 344, 670, 673
Sau3AI	GATC	4 cut(s)	7, 28, 180, 569
Sau96I	GGNCC	1 cut(s)	684
SchI	GAGTC	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	132, 424
SinI	GGWCC	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	4 cut(s)	234, 344, 670, 673
SspMI	CTAG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	2 cut(s)	602, 645
TasI	AATT	1 cut(s)	320
TatI	WGTACW	1 cut(s)	113
TauI	GCSGC	4 cut(s)	237, 346, 672, 675
TfiI	GAWTC	8 cut(s)	44, 64, 203, 399, 443, 624, 710, 731
TseFI	GTSAC	2 cut(s)	185, 646
TseI	GCWGC	5 cut(s)	19, 59, 145, 231, 237
Tsp45I	GTSAC	2 cut(s)	185, 646
TspDTI	ATGAA	7 cut(s)	412, 481, 511, 569, 702, 723, 735
TspGWI	ACGGA	2 cut(s)	168, 339
VpaK11BI	GGWCC	1 cut(s)	684
XapI	RAATTY	1 cut(s)	320
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.