Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002299

Physical Location & Seq

Genomic Coordinates Reverse (-)

65414122 .. 65416675

Gene Structure 2554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG407900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGTGAACACTTTGTATTGTTGGTGGATCGATTGCTCACAGAATCCACATTAGAGGCAATCGAGAGCAGAAACAGGTCGGTGCAAGCCACATCCTCAGCAGTTGAAAATCGGAAACTTGATTACTCAAATTGCCAGAAGATAGATTTTGAGGATATTGTACTATCTCCTCGGAAAATAGTAGAATGCAGAATATGTCAGGATGAGGATGAAGATTCGAAGATGGAGACGCCTTGTTCTTGTTGTGGCAGCTTAAAGTACGCTCACCGCAGATGTGTACAGAGATGGTGTAATGAGAAAGGTGACACGCTGTGTGAGATATGCCACCAACAATTCAAGCCTGGTTATACAGCTCCTCCTCCACTGTTTCAATTCGGGCGTATACCTATGAACTTCAGGGGGAACTGGGAAGTTTCGAGAAGGGGCAGTCCACGTATTATAATGGTTTCAACTGATCGTGAGTTCCTGAATCCTGATCATGAGTATGATGAGTATTCTGCTTCTACTGCAAGAAGTGTGTTATGGTGTCGATCAGTCGCGTTCATTTTCATGGTTTTGCTGATTTTAAGGCACACTCTTCCTCTCATAATTAGTGGAAACAAAGACTACTCCTTCCCACTTATTATGTTATTAGTTTTAAGAACTGTTGGGATCGTTGTGCCAATTTATGTAATGGTGAGGCTAGTAACTGCTATTCAGCGACGCCGAAGCCAACCAGATTTTTCCAGTTCGTCGATGACTTCCTCCGACGATGAAGAAACAGAATCTTCTTCAGTCCTGCAGCCTCAGCCTCATATCATTCGAATAGCAACAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

273

Amino Acids

31.33

Weight (kDa)

6.11

Isoelectric Point (pI)

56.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	63 - 108	3.2e-12	RING-variant domain
DUF3675	PF12428	114 - 228	1.8e-40	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01275 AT2G01275 AT2G01275 AT2G01275 AT2G01275
fragaria_vesca	FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130
malus_domestica	MD13G1028300.v1.1 MD16G1031200.v1.1
prunus_persica	Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1
pyrus_communis	pycom13g02670 pycom16g02720
rosa_chinensis	RchiOBHm_Chr4g0440831
rosa_laevigata	RLG00000006145
rosa_multiflora	Rmu_sc0005054.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381660
rosa_rugosa	Rorug04G0328400 Rorug04G0328500 Rorug04G0328600 Rorug04G0328600 Rorug04G0328700 Rorug04G0328800
rosa_samantha	Rh4BG393100 Rh4CG407900 Rh4DG387000
rosa_wichuraiana	Rw4G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	382
AccII	CGCG	1 cut(s)	539
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	2 cut(s)	36, 659
AcuI	CTGAAG	2 cut(s)	379, 756
AcyI	GRCGYC	2 cut(s)	230, 703
AdeI	CACNNNGTG	1 cut(s)	312
AfaI	GTAC	3 cut(s)	162, 260, 279
AgsI	TTSAA	4 cut(s)	107, 337, 371, 450
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	2 cut(s)	252, 353
AluI	AGCT	2 cut(s)	252, 353
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	36, 659
ApeKI	GCWGC	2 cut(s)	249, 781
AsuHPI	GGTGA	4 cut(s)	17, 257, 314, 688
AsuII	TTCGAA	2 cut(s)	218, 802
BbvCI	CCTCAGC	2 cut(s)	97, 786
BbvI	GCAGC	2 cut(s)	261, 793
BccI	CCATC	2 cut(s)	217, 279
BciT130I	CCWGG	1 cut(s)	342
BclI	TGATCA	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	683
BfmI	CTRYAG	1 cut(s)	779
BisI	GCNGC	2 cut(s)	250, 782
BlsI	GCNGC	2 cut(s)	251, 783
Bme1390I	CCNGG	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	415
Bpu10I	CCTNAGC	2 cut(s)	97, 786
Bpu14I	TTCGAA	2 cut(s)	218, 802
Bsa29I	ATCGAT	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	434
BsaHI	GRCGYC	2 cut(s)	230, 703
BsaJI	CCNNGG	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bse1I	ACTGG	2 cut(s)	410, 726
BseBI	CCWGG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	3 cut(s)	92, 208, 214
BseMII	CTCAG	2 cut(s)	111, 800
BseNI	ACTGG	2 cut(s)	410, 726
BseRI	GAGGAG	3 cut(s)	159, 345, 348
BseXI	GCAGC	2 cut(s)	261, 793
Bsh1236I	CGCG	1 cut(s)	539
BshVI	ATCGAT	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	191
Bsp119I	TTCGAA	2 cut(s)	218, 802
Bsp1407I	TGTACA	1 cut(s)	277
Bsp143I	GATC	5 cut(s)	28, 454, 475, 530, 651
BspACI	CCGC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	110, 799
BspDI	ATCGAT	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	539
BspHI	TCATGA	1 cut(s)	478
BspMAI	CTGCAG	1 cut(s)	783
BspPI	GGATC	2 cut(s)	36, 659
BspT104I	TTCGAA	2 cut(s)	218, 802
BsrGI	TGTACA	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	410, 726
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	5 cut(s)	28, 454, 475, 530, 651
BssNAI	GTATAC	1 cut(s)	383
BssNI	GRCGYC	2 cut(s)	230, 703
Bst1107I	GTATAC	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	366, 646
Bst6I	CTCTTC	1 cut(s)	582
BstACI	GRCGYC	2 cut(s)	230, 703
BstAUI	TGTACA	1 cut(s)	277
BstBAI	YACGTR	1 cut(s)	434
BstBI	TTCGAA	2 cut(s)	218, 802
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	97, 786
BstF5I	GGATG	3 cut(s)	92, 208, 214
BstFNI	CGCG	1 cut(s)	539
BstKTI	GATC	5 cut(s)	31, 457, 478, 533, 654
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	5 cut(s)	28, 454, 475, 530, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 787
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	779
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	2 cut(s)	261, 793
BstZ17I	GTATAC	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	92, 208, 214
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	478
ClaI	ATCGAT	1 cut(s)	31
CseI	GACGC	2 cut(s)	238, 711
Csp6I	GTAC	3 cut(s)	161, 259, 278
CviAII	CATG	2 cut(s)	479, 550
CviJI	RGCY	8 cut(s)	89, 252, 340, 353, 682, 711, 784, 790
CviKI_1	RGCY	8 cut(s)	89, 252, 340, 353, 682, 711, 784, 790
CviQI	GTAC	3 cut(s)	161, 259, 278
DdeI	CTNAG	2 cut(s)	97, 786
DpnI	GATC	5 cut(s)	30, 456, 477, 532, 653
DpnII	GATC	5 cut(s)	28, 454, 475, 530, 651
DraIII	CACNNNGTG	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco57I	CTGAAG	2 cut(s)	379, 756
EcoRII	CCWGG	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	2 cut(s)	482, 553
FatI	CATG	2 cut(s)	478, 549
FbaI	TGATCA	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	250, 782
FokI	GGATG	3 cut(s)	79, 215, 221
Fsp4HI	GCNGC	2 cut(s)	250, 782
FspBI	CTAG	1 cut(s)	683
GluI	GCNGC	2 cut(s)	250, 782
HgaI	GACGC	2 cut(s)	238, 711
Hin1I	GRCGYC	2 cut(s)	230, 703
Hin1II	CATG	2 cut(s)	482, 553
HinfI	GANTC	4 cut(s)	44, 215, 469, 764
HphI	GGTGA	4 cut(s)	17, 257, 314, 688
Hpy166II	GTNNAC	4 cut(s)	8, 278, 383, 431
Hpy188I	TCNGA	3 cut(s)	114, 174, 748
Hpy188III	TCNNGA	7 cut(s)	64, 200, 417, 458, 466, 473, 479
Hpy8I	GTNNAC	4 cut(s)	8, 278, 383, 431
Hpy99I	CGWCG	3 cut(s)	705, 736, 752
HpyAV	CCTTC	2 cut(s)	414, 622
HpyCH4III	ACNGT	2 cut(s)	366, 646
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	4 cut(s)	85, 189, 509, 781
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 787
HpyF3I	CTNAG	2 cut(s)	97, 786
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	2 cut(s)	230, 703
Hsp92II	CATG	2 cut(s)	482, 553
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	5 cut(s)	28, 454, 475, 530, 651
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	2 cut(s)	261, 793
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	2 cut(s)	302, 685
MalI	GATC	5 cut(s)	30, 456, 477, 532, 653
MboI	GATC	5 cut(s)	28, 454, 475, 530, 651
MboII	GAAGA	7 cut(s)	151, 224, 232, 569, 759, 762, 767
MluCI	AATT	6 cut(s)	130, 332, 371, 588, 663, 817
MmeI	TCCRAC	1 cut(s)	771
MseI	TTAA	4 cut(s)	254, 566, 638, 820
MslI	CAYNNNNRTG	2 cut(s)	483, 548
MspR9I	CCNGG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	2 cut(s)	506, 787
NdeII	GATC	5 cut(s)	28, 454, 475, 530, 651
NlaIII	CATG	2 cut(s)	482, 553
NmuCI	GTSAC	1 cut(s)	302
NspV	TTCGAA	2 cut(s)	218, 802
PagI	TCATGA	1 cut(s)	478
PctI	GAATGC	1 cut(s)	191
PfeI	GAWTC	4 cut(s)	44, 215, 469, 764
PkrI	GCNGC	2 cut(s)	251, 783
Ppu21I	YACGTR	1 cut(s)	434
PsiI	TTATAA	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PstI	CTGCAG	1 cut(s)	783
RsaI	GTAC	3 cut(s)	162, 260, 279
RsaNI	GTAC	3 cut(s)	161, 259, 278
RseI	CAYNNNNRTG	2 cut(s)	483, 548
SaqAI	TTAA	4 cut(s)	254, 566, 638, 820
SatI	GCNGC	2 cut(s)	250, 782
Sau3AI	GATC	5 cut(s)	28, 454, 475, 530, 651
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	6 cut(s)	80, 254, 304, 355, 388, 436
SfcI	CTRYAG	1 cut(s)	779
SfuI	TTCGAA	2 cut(s)	218, 802
SmiMI	CAYNNNNRTG	2 cut(s)	483, 548
Sse9I	AATT	6 cut(s)	130, 332, 371, 588, 663, 817
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	366, 646
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	7 cut(s)	31, 63, 218, 416, 529, 734, 802
TasI	AATT	6 cut(s)	130, 332, 371, 588, 663, 817
TatI	WGTACW	2 cut(s)	160, 277
TfiI	GAWTC	4 cut(s)	44, 215, 469, 764
Tru1I	TTAA	4 cut(s)	254, 566, 638, 820
Tru9I	TTAA	4 cut(s)	254, 566, 638, 820
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	249, 781
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	5 cut(s)	225, 404, 532, 538, 768
TspRI	CASTG	1 cut(s)	369
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.