Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002299

Physical Location & Seq

Genomic Coordinates Reverse (-)

30920300 .. 30923501

Gene Structure 3202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32130.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGTGAACACTTTGTATTGTTGGTGGATCGATTGCTCACCGAATCCACATTAGAGGCAATCGAGAACAGAAACAGGTCGATGCAAGCCACATCCTCAGCAGTCGAAAATCCGAAACTTGATTATTCAAATGCGCTGAAGATAGATTATGAGGATATTGTATTGTCTCCTAGGAAAATAGTAGAATGCAGAATATGTCAGGACGAGGATGAAGATTCAAACATGGAGACGCCTTGTTCTTGCTGTGGCAGCTTAAAGTATGCTCACCGCAGATGCGTACAGAGATGGTGTAATGAGAAAGGCGATACATTGTGTGAGATATGCCACCAACAATTCAAGCCTGGTTATACAGCTCCTCCTCCATTGTTTCAATTCGGGCGCATACCTATGGACTTCAGGGGGAACTGGGAAGTGTCAAGAAGGGGCAGTCCACGTATTATAATGGTTTCAACTGATCGTGAGTTCCTGAATCCTCATGAGTATGATGAGTATTCTGCTTCTACTGCAAGAAGTCTGACATGGTGTCGATCAGTCGCGTTCATTTTCATGGTTCTGCTGATTTTAAGGCATACTCTTCCTCTCATAGTTAATGACTACTCCTTCCCACTTGTTATGTTATTGGTTTTAAGAACTTTTGCGATAGTTCTGCCAATCTATATAATGGTGAGGCTAGTGACTGCTATGCATCGACGCCGGAGTCCACAAGTTCAGGATCTTTCCAGTTCGTCGATGACTTCCTCCGACGATGAAGAAACAGAACCTTCTTCAGTCCTGCAGCCTCAGACTCATATCATTCGAATAGAAACAGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

272

Amino Acids

31.26

Weight (kDa)

5.45

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	63 - 108	2.3e-12	RING-variant domain
DUF3675	PF12428	114 - 224	3e-37	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01275 AT2G01275 AT2G01275 AT2G01275 AT2G01275
fragaria_vesca	FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130
malus_domestica	MD13G1028300.v1.1 MD16G1031200.v1.1
prunus_persica	Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1
pyrus_communis	pycom13g02670 pycom16g02720
rosa_chinensis	RchiOBHm_Chr4g0440831
rosa_laevigata	RLG00000006145
rosa_multiflora	Rmu_sc0005054.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381660
rosa_rugosa	Rorug04G0328400 Rorug04G0328500 Rorug04G0328600 Rorug04G0328600 Rorug04G0328700 Rorug04G0328800
rosa_samantha	Rh4BG393100 Rh4CG407900 Rh4DG387000
rosa_wichuraiana	Rw4G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
AasI	GACNNNNNNGTC	1 cut(s)	696
AccII	CGCG	1 cut(s)	536
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	2 cut(s)	36, 720
AcuI	CTGAAG	3 cut(s)	158, 379, 750
AcyI	GRCGYC	2 cut(s)	230, 691
AfaI	GTAC	1 cut(s)	279
AgsI	TTSAA	5 cut(s)	129, 219, 337, 371, 450
AhdI	GACNNNNNGTC	1 cut(s)	522
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	2 cut(s)	252, 353
AluI	AGCT	2 cut(s)	252, 353
Alw26I	GTCTC	2 cut(s)	171, 221
AlwI	GGATC	2 cut(s)	36, 720
ApeKI	GCWGC	2 cut(s)	249, 775
AspA2I	CCTAGG	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	136, 381
AsuHPI	GGTGA	4 cut(s)	17, 31, 257, 676
AsuII	TTCGAA	1 cut(s)	796
AvrII	CCTAGG	1 cut(s)	170
BbvCI	CCTCAGC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	261, 787
BccI	CCATC	1 cut(s)	279
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BciT130I	CCWGG	1 cut(s)	342
BcoDI	GTCTC	2 cut(s)	171, 221
BfaI	CTAG	2 cut(s)	171, 671
BfmI	CTRYAG	1 cut(s)	773
BisI	GCNGC	2 cut(s)	250, 776
BlnI	CCTAGG	1 cut(s)	170
BlsI	GCNGC	2 cut(s)	251, 777
Bme1390I	CCNGG	1 cut(s)	342
BmeRI	GACNNNNNGTC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	3 cut(s)	72, 263, 694
BmuI	ACTGGG	1 cut(s)	415
Bpu10I	CCTNAGC	1 cut(s)	97
Bpu14I	TTCGAA	1 cut(s)	796
Bsa29I	ATCGAT	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	434
BsaHI	GRCGYC	2 cut(s)	230, 691
BsaJI	CCNNGG	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bse1I	ACTGG	2 cut(s)	410, 720
BseBI	CCWGG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	2 cut(s)	92, 214
BseMII	CTCAG	2 cut(s)	111, 794
BseNI	ACTGG	2 cut(s)	410, 720
BseRI	GAGGAG	2 cut(s)	345, 348
BseXI	GCAGC	2 cut(s)	261, 787
Bsh1236I	CGCG	1 cut(s)	536
BshVI	ATCGAT	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	694
BsmAI	GTCTC	2 cut(s)	171, 221
BsmBI	CGTCTC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	796
Bsp143I	GATC	4 cut(s)	28, 454, 527, 712
BspACI	CCGC	1 cut(s)	268
BspCNI	CTCAG	2 cut(s)	110, 793
BspDI	ATCGAT	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	536
BspHI	TCATGA	1 cut(s)	475
BspMAI	CTGCAG	1 cut(s)	777
BspPI	GGATC	2 cut(s)	36, 720
BspT104I	TTCGAA	1 cut(s)	796
BsrI	ACTGG	2 cut(s)	410, 720
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	4 cut(s)	28, 454, 527, 712
BssNI	GRCGYC	2 cut(s)	230, 691
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	2 cut(s)	230, 691
BstBAI	YACGTR	1 cut(s)	434
BstBI	TTCGAA	1 cut(s)	796
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	97, 780
BstF5I	GGATG	2 cut(s)	92, 214
BstFNI	CGCG	1 cut(s)	536
BstHHI	GCGC	2 cut(s)	136, 381
BstKTI	GATC	4 cut(s)	31, 457, 530, 715
BstMAI	GTCTC	2 cut(s)	171, 221
BstMBI	GATC	4 cut(s)	28, 454, 527, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	249, 503
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	773
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	2 cut(s)	261, 787
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
Bsu15I	ATCGAT	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	92, 214
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	475
CfoI	GCGC	2 cut(s)	136, 381
ClaI	ATCGAT	1 cut(s)	31
CseI	GACGC	2 cut(s)	238, 699
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	4 cut(s)	223, 476, 519, 547
CviJI	RGCY	6 cut(s)	89, 252, 340, 353, 670, 778
CviKI_1	RGCY	6 cut(s)	89, 252, 340, 353, 670, 778
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	2 cut(s)	97, 780
DpnI	GATC	4 cut(s)	30, 456, 529, 714
DpnII	GATC	4 cut(s)	28, 454, 527, 712
DrdI	GACNNNNNNGTC	1 cut(s)	696
DriI	GACNNNNNGTC	1 cut(s)	522
DseDI	GACNNNNNNGTC	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	579
Eam1105I	GACNNNNNGTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	170
Eco57I	CTGAAG	3 cut(s)	158, 379, 750
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	170
EcoT22I	ATGCAT	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	170
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	4 cut(s)	226, 479, 522, 550
FatI	CATG	4 cut(s)	222, 475, 518, 546
Fnu4HI	GCNGC	2 cut(s)	250, 776
FokI	GGATG	2 cut(s)	79, 221
Fsp4HI	GCNGC	2 cut(s)	250, 776
FspBI	CTAG	2 cut(s)	171, 671
GlaI	GCGC	2 cut(s)	135, 380
GluI	GCNGC	2 cut(s)	250, 776
HapII	CCGG	1 cut(s)	694
HgaI	GACGC	2 cut(s)	238, 699
HhaI	GCGC	2 cut(s)	136, 381
Hin1I	GRCGYC	2 cut(s)	230, 691
Hin1II	CATG	4 cut(s)	226, 479, 522, 550
Hin6I	GCGC	2 cut(s)	134, 379
HinP1I	GCGC	2 cut(s)	134, 379
HinfI	GANTC	5 cut(s)	44, 215, 469, 697, 784
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	4 cut(s)	17, 31, 257, 676
Hpy166II	GTNNAC	3 cut(s)	8, 431, 701
Hpy188I	TCNGA	4 cut(s)	114, 516, 742, 783
Hpy188III	TCNNGA	7 cut(s)	64, 200, 417, 458, 466, 476, 710
Hpy8I	GTNNAC	3 cut(s)	8, 431, 701
Hpy99I	CGWCG	3 cut(s)	693, 730, 746
HpyAV	CCTTC	3 cut(s)	414, 610, 771
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	5 cut(s)	85, 189, 506, 685, 775
HpyF10VI	GCNNNNNNNGC	2 cut(s)	249, 503
HpyF3I	CTNAG	2 cut(s)	97, 780
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	2 cut(s)	230, 691
Hsp92II	CATG	4 cut(s)	226, 479, 522, 550
HspAI	GCGC	2 cut(s)	134, 379
Kzo9I	GATC	4 cut(s)	28, 454, 527, 712
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	2 cut(s)	261, 787
LweI	GCATC	3 cut(s)	72, 263, 694
MaeI	CTAG	2 cut(s)	171, 671
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	4 cut(s)	30, 456, 529, 714
MboI	GATC	4 cut(s)	28, 454, 527, 712
MboII	GAAGA	5 cut(s)	151, 224, 566, 756, 761
MflI	RGATCY	1 cut(s)	712
MluCI	AATT	2 cut(s)	332, 371
MlyI	GAGTC	2 cut(s)	706, 778
MmeI	TCCRAC	1 cut(s)	765
Mph1103I	ATGCAT	1 cut(s)	687
MseI	TTAA	5 cut(s)	254, 563, 588, 626, 814
MslI	CAYNNNNRTG	3 cut(s)	386, 480, 545
MspI	CCGG	1 cut(s)	694
MspR9I	CCNGG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	2 cut(s)	249, 503
NdeII	GATC	4 cut(s)	28, 454, 527, 712
NlaIII	CATG	4 cut(s)	226, 479, 522, 550
NmuCI	GTSAC	1 cut(s)	673
NsiI	ATGCAT	1 cut(s)	687
NspV	TTCGAA	1 cut(s)	796
PagI	TCATGA	1 cut(s)	475
PctI	GAATGC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	44, 215, 469
PkrI	GCNGC	2 cut(s)	251, 777
PleI	GAGTC	2 cut(s)	705, 778
PpsI	GAGTC	2 cut(s)	705, 778
Ppu21I	YACGTR	1 cut(s)	434
PsiI	TTATAA	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PstI	CTGCAG	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	3 cut(s)	386, 480, 545
SaqAI	TTAA	5 cut(s)	254, 563, 588, 626, 814
SatI	GCNGC	2 cut(s)	250, 776
Sau3AI	GATC	4 cut(s)	28, 454, 527, 712
SchI	GAGTC	2 cut(s)	706, 778
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	6 cut(s)	80, 254, 355, 388, 436, 763
SfaNI	GCATC	3 cut(s)	72, 263, 694
SfcI	CTRYAG	1 cut(s)	773
SfuI	TTCGAA	1 cut(s)	796
SmiMI	CAYNNNNRTG	3 cut(s)	386, 480, 545
Sse9I	AATT	2 cut(s)	332, 371
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	171, 671
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	170
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	8 cut(s)	31, 63, 80, 105, 526, 688, 728, 796
TasI	AATT	2 cut(s)	332, 371
TfiI	GAWTC	3 cut(s)	44, 215, 469
Tru1I	TTAA	5 cut(s)	254, 563, 588, 626, 814
Tru9I	TTAA	5 cut(s)	254, 563, 588, 626, 814
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	2 cut(s)	249, 775
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	4 cut(s)	225, 529, 535, 762
XmaJI	CCTAGG	1 cut(s)	170
XspI	CTAG	2 cut(s)	171, 671
Zsp2I	ATGCAT	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.